mRNA_P-littoralis_Contig1036.4.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1036.4.1
Unique NamemRNA_P-littoralis_Contig1036.4.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1036.4.1 vs. uniprot
Match: A0A6H5KAN7_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAN7_9PHAE)

HSP 1 Score: 73.9 bits (180), Expect = 1.240e-13
Identity = 40/75 (53.33%), Postives = 51/75 (68.00%), Query Frame = 1 
Query:    1 MVGHCSHSVCNNDEFKKVQEELEEMCKLLELIRRNDTRWASLHAMLQRVLRLYRALVEYF-NRCGSDRALFPTEW 222
            +VG  SHS  NNDE K +Q   EE   + ELIRRNDTRWAS HAM+ R+L+L +A+VEYF +   ++R L   EW
Sbjct:   84 VVGVFSHSAVNNDELKDIQRLQEEFQIIYELIRRNDTRWASQHAMMVRLLKLKKAIVEYFRDNENNNRKLSSREW 158
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BLAST of mRNA_P-littoralis_Contig1036.4.1 vs. uniprot
Match: A0A6H5KJ52_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ52_9PHAE)

HSP 1 Score: 73.9 bits (180), Expect = 1.280e-13
Identity = 40/75 (53.33%), Postives = 51/75 (68.00%), Query Frame = 1 
Query:    1 MVGHCSHSVCNNDEFKKVQEELEEMCKLLELIRRNDTRWASLHAMLQRVLRLYRALVEYF-NRCGSDRALFPTEW 222
            +VG  SHS  NNDE K +Q   EE   + ELIRRNDTRWAS HAM+ R+L+L +A+VEYF +   ++R L   EW
Sbjct:  412 VVGVFSHSAVNNDELKDIQRLQEEFQIIYELIRRNDTRWASQHAMMVRLLKLKKAIVEYFRDNENNNRKLSSREW 486
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1036.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KAN7_9PHAE1.240e-1353.33Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KJ52_9PHAE1.280e-1353.33Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1036contigP-littoralis_Contig1036:5087..5678 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size236
Hectar predicted targeting categoryother localisation
Exons2
Cds size234
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789372.008397-CDS-P-littoralis_Contig1036:5086..51991680789372.008397-CDS-P-littoralis_Contig1036:5086..5199Pylaiella littoralis U1_48CDSP-littoralis_Contig1036 5087..5199 +
1680789372.021182-CDS-P-littoralis_Contig1036:5557..56781680789372.021182-CDS-P-littoralis_Contig1036:5557..5678Pylaiella littoralis U1_48CDSP-littoralis_Contig1036 5558..5678 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1036.4.1prot_P-littoralis_Contig1036.4.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1036 5087..5678 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1036.4.1

>prot_P-littoralis_Contig1036.4.1 ID=prot_P-littoralis_Contig1036.4.1|Name=mRNA_P-littoralis_Contig1036.4.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=78bp
MVGHCSHSVCNNDEFKKVQEELEEMCKLLELIRRNDTRWASLHAMLQRVL
RLYRALVEYFNRCGSDRALFPTEWQAVQ
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mRNA from alignment at P-littoralis_Contig1036:5087..5678+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1036.4.1 ID=mRNA_P-littoralis_Contig1036.4.1|Name=mRNA_P-littoralis_Contig1036.4.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=592bp|location=Sequence derived from alignment at P-littoralis_Contig1036:5087..5678+ (Pylaiella littoralis U1_48)
ATGGTTGGGCACTGCAGCCACAGTGTGTGCAACAACGACGAGTTCAAGAA
AGTGCAAGAAGAGCTTGAAGAGATGTGCAAGCTCTTGGAGCTCATCCGTC
GGAACGACACAAGGTGAGAGGTGTGCGCGAATGATGTGCGCAGGTTGTAT
TCGGGATTTATTTTGTGTGTTCGTGTCGTCTCGGACAACAGAAAGGTCGA
GGCAGGCGCCGCCCCGCCAAGTATGCAGCAACTTGCTTTCGCTTATGGAT
TATTACAAAATCGCCGTGAGTTGCCACGCCCTAAAGAAAAAATTAAAAAA
ATTGTAAAATGTCGTTCCTGTGGTGAACGAAGTTGGGAGCAAACGTTCCG
GGTCACTCGTTTAGACACGCAAACTGACGTGCCCCTTCCGCCCCCTCCCC
CGAAGCAAGCACTAACTCGTTTGCAAACGAAATTGCCTCCCATCACCCGC
CACGTTTTGAACGGTTCATAGGTGGGCTTCGCTGCATGCAATGCTCCAGC
GCGTGCTCAGGCTCTACAGAGCTCTCGTCGAGTACTTCAACCGGTGTGGG
AGCGACCGTGCTTTGTTCCCGACGGAGTGGCAAGCAGTGCAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig1036:5087..5678+

>mRNA_P-littoralis_Contig1036.4.1 ID=mRNA_P-littoralis_Contig1036.4.1|Name=mRNA_P-littoralis_Contig1036.4.1|organism=Pylaiella littoralis U1_48|type=CDS|length=234bp|location=Sequence derived from alignment at P-littoralis_Contig1036:5087..5678+ (Pylaiella littoralis U1_48)
ATGGTTGGGCACTGCAGCCACAGTGTGTGCAACAACGACGAGTTCAAGAA
AGTGCAAGAAGAGCTTGAAGAGATGTGCAAGCTCTTGGAGCTCATCCGTC
GGAACGACACAAGGTGGGCTTCGCTGCATGCAATGCTCCAGCGCGTGCTC
AGGCTCTACAGAGCTCTCGTCGAGTACTTCAACCGGTGTGGGAGCGACCG
TGCTTTGTTCCCGACGGAGTGGCAAGCAGTGCAG
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