mRNA_P-littoralis_Contig1036.36.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_P-littoralis_Contig1036.36.1
Unique Name	mRNA_P-littoralis_Contig1036.36.1
Type	mRNA
Organism	Pylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))

Homology

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BLAST of mRNA_P-littoralis_Contig1036.36.1 vs. uniprot
Match: A0A6H5L7P7_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7P7_9PHAE)

HSP 1 Score: 71.6 bits (174), Expect = 7.840e-13
Identity = 38/83 (45.78%), Postives = 50/83 (60.24%), Query Frame = 1

Query:  106 RRAAAQREYAEYMKEAALTDTDPTFTALEYWKPRAVDGLDKS-GNVVAPARWPHVGLIARLHLGVDATSCQAERNFSALKLIV 351
            RR   +RE   Y+ E    D D  F  L +W  R  D +  + G V +PA  P++  IARLHLG++ATSCQAERNFSAL  ++
Sbjct:  118 RRVLIEREMLVYLAEQPQVDVDD-FNLLGFWNRRGTDSVSAATGKVTSPAEMPYLAFIARLHLGIEATSCQAERNFSALAHLI 199

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BLAST of mRNA_P-littoralis_Contig1036.36.1 vs. uniprot
Match: A0A6H5JGG8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGG8_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 1.490e-12
Identity = 45/126 (35.71%), Postives = 65/126 (51.59%), Query Frame = 1

Query:    1 PAAPVPQLTRMEKIRLAQNAKIARPNTASSAVRE--------TRRAAAQREYAEYMKEAALTDTDPTFTALEYWKPRAVDGLDKS-GNVVAPARWPHVGLIARLHLGVDATSCQAERNFSALKLIV 351
            P  P P+  ++ ++   + A++A   T               TRR   +RE   Y+ E    D D  F  L YW  R  D +  + G V +PA  P++  IARL+LG++ATSCQAERNFSAL  ++
Sbjct:  657 PVEPAPKKKKLSRLEERRAARVAAATTGGDETGSLEDQSPSTTRRVLIEREVLVYLAENPQLDVDG-FNVLGYWNRRGTDSVSATTGKVTSPAEMPYLAFIARLYLGIEATSCQAERNFSALAHLI 781

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BLAST of mRNA_P-littoralis_Contig1036.36.1 vs. uniprot
Match: A0A6H5JTB8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTB8_9PHAE)

HSP 1 Score: 72.4 bits (176), Expect = 1.980e-12
Identity = 47/123 (38.21%), Postives = 68/123 (55.28%), Query Frame = 1

Query:    1 PAAPVPQLTRMEKIRLAQNAKIARPNTASSAVRE-----TRRAAAQREYAEYMKEAALTDTDPTFTALEYWKPRAVDGLDKS-GNVVAPARWPHVGLIARLHLGVDATSCQAERNFSALKLIV 351
            PA    +L+R+E+ R A+ A        + ++ +     TRR   +RE   Y+ E    D D  F  L YW  R  D +  + G V +PA  P++  IARL+LG++ATSCQAERNFSAL  ++
Sbjct:  465 PAPKKKKLSRLEERRAARVAAATTGGDETGSLEDQSPSTTRRVLIEREVLVYLAENPQLDVDG-FNVLGYWNRRGTDSVSATTGKVTSPAEMPYLAFIARLYLGIEATSCQAERNFSALAHLI 586

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BLAST of mRNA_P-littoralis_Contig1036.36.1 vs. uniprot
Match: A0A6H5JQI6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQI6_9PHAE)

HSP 1 Score: 71.6 bits (174), Expect = 3.690e-12
Identity = 38/83 (45.78%), Postives = 50/83 (60.24%), Query Frame = 1

Query:  106 RRAAAQREYAEYMKEAALTDTDPTFTALEYWKPRAVDGLDKS-GNVVAPARWPHVGLIARLHLGVDATSCQAERNFSALKLIV 351
            RR   +RE   Y+ E    D D  F  L +W  R  D +  + G V +PA  P++  IARLHLG++ATSCQAERNFSAL  ++
Sbjct:  501 RRVLIEREMLVYLAEQPQVDVDD-FNLLGFWNRRGTDSVSAATGKVTSPAEMPYLAFIARLHLGIEATSCQAERNFSALAHLI 582

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BLAST of mRNA_P-littoralis_Contig1036.36.1 vs. uniprot
Match: A0A6H5KJT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJT6_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 3.990e-12
Identity = 48/123 (39.02%), Postives = 70/123 (56.91%), Query Frame = 1

Query:    1 PAAPVPQLTRMEKIRLAQNAKIARPNTASSAVRE-----TRRAAAQREYAEYMKEAALTDTDPTFTALEYWKPRAVDGL-DKSGNVVAPARWPHVGLIARLHLGVDATSCQAERNFSALKLIV 351
            PA+   +L+R+E+ R A+ A  A    AS +V+       RR   +RE   Y+ E    + D  F  L +W  R  D +   +GNV +PA  P++  IARL LG++A+SCQAERNFSAL  ++
Sbjct:   84 PASKRKKLSRLEERRAARVA-AASDGGASGSVQAQGSATNRRVLIEREVLVYLAETEQVEVDD-FNVLGFWNRRGTDSVCSTTGNVTSPAEMPYLAFIARLFLGIEASSCQAERNFSALSHLI 204

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BLAST of mRNA_P-littoralis_Contig1036.36.1 vs. uniprot
Match: A0A6H5JZU3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZU3_9PHAE)

HSP 1 Score: 70.9 bits (172), Expect = 6.860e-12
Identity = 38/83 (45.78%), Postives = 50/83 (60.24%), Query Frame = 1

Query:  106 RRAAAQREYAEYMKEAALTDTDPTFTALEYWKPRAVDGLDKS-GNVVAPARWPHVGLIARLHLGVDATSCQAERNFSALKLIV 351
            RR   +RE   Y+ E    D D  F  L +W  R  D +  + G V +PA  P++  IARLHLG++ATSCQAERNFSAL  ++
Sbjct:  533 RRVLIEREMLVYLAEQPQVDVDD-FNPLGFWNRRGTDSVSAATGKVSSPAEMPYLAFIARLHLGIEATSCQAERNFSALAHLI 614

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BLAST of mRNA_P-littoralis_Contig1036.36.1 vs. uniprot
Match: A0A6H5JRT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRT6_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 9.590e-12
Identity = 48/123 (39.02%), Postives = 70/123 (56.91%), Query Frame = 1

Query:    1 PAAPVPQLTRMEKIRLAQNAKIARPNTASSAVRE-----TRRAAAQREYAEYMKEAALTDTDPTFTALEYWKPRAVDGL-DKSGNVVAPARWPHVGLIARLHLGVDATSCQAERNFSALKLIV 351
            PA+   +L+R+E+ R A+ A  A    AS +V+       RR   +RE   Y+ E    + D  F  L +W  R  D +   +GNV +PA  P++  IARL LG++A+SCQAERNFSAL  ++
Sbjct:  649 PASKRKKLSRLEERRAARVA-AASDGGASGSVQAQGSATNRRVLIEREVLVYLAETEQVEVDD-FNVLGFWNRRGTDSVCSTTGNVTSPAEMPYLAFIARLFLGIEASSCQAERNFSALSHLI 769

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BLAST of mRNA_P-littoralis_Contig1036.36.1 vs. uniprot
Match: A0A6H5JXV5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXV5_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 4.340e-11
Identity = 37/83 (44.58%), Postives = 50/83 (60.24%), Query Frame = 1

Query:  106 RRAAAQREYAEYMKEAALTDTDPTFTALEYWKPRAVDGLDKS-GNVVAPARWPHVGLIARLHLGVDATSCQAERNFSALKLIV 351
            RR   +RE   Y+ E    D D  F  + +W  R  D +  + G V +PA  P++  IARLHLG++ATSCQAERNFSAL  ++
Sbjct:  397 RRVLIEREMLVYLAEQPQLDVDG-FNLIGFWNRRGTDSVRAATGQVTSPADMPYLAFIARLHLGIEATSCQAERNFSALAHLI 478

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BLAST of mRNA_P-littoralis_Contig1036.36.1 vs. uniprot
Match: A0A6H5KDJ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDJ6_9PHAE)

HSP 1 Score: 67.8 bits (164), Expect = 8.040e-11
Identity = 35/78 (44.87%), Postives = 48/78 (61.54%), Query Frame = 1

Query:  121 QREYAEYMKEAALTDTDPTFTALEYWKPRAVDGL-DKSGNVVAPARWPHVGLIARLHLGVDATSCQAERNFSALKLIV 351
            +RE   Y+ E    D D  F  + +W  R  + +   +G V APA  P++  IARLHLG++ATSCQAERNFSAL  ++
Sbjct:  388 EREVLVYLAEQPQVDVDG-FNLVGFWNRRGTNSVCPTTGKVTAPAEMPYLAFIARLHLGIEATSCQAERNFSALAHLI 464

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BLAST of mRNA_P-littoralis_Contig1036.36.1 vs. uniprot
Match: A0A6H5KAN7_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAN7_9PHAE)

HSP 1 Score: 57.4 bits (137), Expect = 3.510e-7
Identity = 40/104 (38.46%), Postives = 58/104 (55.77%), Query Frame = 1

Query:   43 RLAQNAKIARPNTASSAVRETRRAA-AQREYAEYMKEAALTDTDPTFTALEYWKPRAVDGLDKSGNVVAPARWPHVGLIARLHLGVDATSCQAERNFSALKLIV 351
            RLA++   +    A +AV   RR A  +RE   Y+ E    + +  F+ LE+W+ R+          V P   PH+ LIARL  G+++TSCQAERNFSAL  ++
Sbjct:  341 RLAKSKAASAGRAAPAAVSTARRGAIVERELRMYLAEDPAEE-EYDFSLLEFWQRRSKPRTCAETGEVEPGL-PHLALIARLFHGIESTSCQAERNFSALAFLI 442

The following BLAST results are available for this feature:

BLAST of mRNA_P-littoralis_Contig1036.36.1 vs. uniprot

BLAST of mRNA_P-littoralis_Contig1036.36.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12


Match Name	E-value	Identity	Description
A0A6H5L7P7_9PHAE	7.840e-13	45.78	Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec...	[more]
A0A6H5JGG8_9PHAE	1.490e-12	35.71	Dimer_Tnp_hAT domain-containing protein n=4 Tax=Ec...	[more]
A0A6H5JTB8_9PHAE	1.980e-12	38.21	Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec...	[more]
A0A6H5JQI6_9PHAE	3.690e-12	45.78	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KJT6_9PHAE	3.990e-12	39.02	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JZU3_9PHAE	6.860e-12	45.78	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JRT6_9PHAE	9.590e-12	39.02	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JXV5_9PHAE	4.340e-11	44.58	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KDJ6_9PHAE	8.040e-11	44.87	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KAN7_9PHAE	3.510e-7	38.46	Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-littoralis_Contig1036	contig	P-littoralis_Contig1036:73176..73529 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Pylaiella littoralis U1_48 OGS1.0	2022-07-08

Properties


Property Name	Value
Stop	0
Start	1
Model size	354
Hectar predicted targeting category	other localisation
Exons	1
Cds size	324

Relationships

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1680789372.6337304-UTR-P-littoralis_Contig1036:73175..73205	1680789372.6337304-UTR-P-littoralis_Contig1036:73175..73205	Pylaiella littoralis U1_48	UTR	P-littoralis_Contig1036 73176..73205 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1680789372.64566-CDS-P-littoralis_Contig1036:73205..73529	1680789372.64566-CDS-P-littoralis_Contig1036:73205..73529	Pylaiella littoralis U1_48	CDS	P-littoralis_Contig1036 73206..73529 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_P-littoralis_Contig1036.36.1	prot_P-littoralis_Contig1036.36.1	Pylaiella littoralis U1_48	polypeptide	P-littoralis_Contig1036 73206..73529 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at P-littoralis_Contig1036:73176..73529+
coding sequence from alignment at P-littoralis_Contig1036:73176..73529+

protein sequence of mRNA_P-littoralis_Contig1036.36.1

>prot_P-littoralis_Contig1036.36.1 ID=prot_P-littoralis_Contig1036.36.1|Name=mRNA_P-littoralis_Contig1036.36.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=108bp
MEKIRLAQNAKIARPNTASSAVRETRRAAAQREYAEYMKEAALTDTDPTF
TALEYWKPRAVDGLDKSGNVVAPARWPHVGLIARLHLGVDATSCQAERNF
SALKLIVS

mRNA from alignment at P-littoralis_Contig1036:73176..73529+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_P-littoralis_Contig1036.36.1 ID=mRNA_P-littoralis_Contig1036.36.1|Name=mRNA_P-littoralis_Contig1036.36.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=354bp|location=Sequence derived from alignment at P-littoralis_Contig1036:73176..73529+ (Pylaiella littoralis U1_48)
CCAGCGGCGCCAGTGCCTCAGCTGACTAGGATGGAAAAGATAAGGCTGGC
TCAGAACGCAAAGATCGCCCGGCCGAATACCGCCAGCTCTGCTGTCCGCG
AGACGCGAAGGGCTGCCGCACAACGGGAGTACGCCGAGTACATGAAGGAG
GCAGCTCTCACTGACACCGACCCCACTTTCACTGCCCTAGAGTACTGGAA
GCCGCGGGCAGTTGATGGGCTCGACAAATCGGGGAACGTTGTCGCTCCTG
CCCGCTGGCCGCATGTTGGCTTGATAGCGCGGTTGCACCTAGGCGTTGAT
GCAACCAGTTGCCAAGCGGAAAGGAATTTTTCCGCCCTCAAGTTGATCGT
TAGC

Coding sequence (CDS) from alignment at P-littoralis_Contig1036:73176..73529+

>mRNA_P-littoralis_Contig1036.36.1 ID=mRNA_P-littoralis_Contig1036.36.1|Name=mRNA_P-littoralis_Contig1036.36.1|organism=Pylaiella littoralis U1_48|type=CDS|length=324bp|location=Sequence derived from alignment at P-littoralis_Contig1036:73176..73529+ (Pylaiella littoralis U1_48)
ATGGAAAAGATAAGGCTGGCTCAGAACGCAAAGATCGCCCGGCCGAATAC
CGCCAGCTCTGCTGTCCGCGAGACGCGAAGGGCTGCCGCACAACGGGAGT
ACGCCGAGTACATGAAGGAGGCAGCTCTCACTGACACCGACCCCACTTTC
ACTGCCCTAGAGTACTGGAAGCCGCGGGCAGTTGATGGGCTCGACAAATC
GGGGAACGTTGTCGCTCCTGCCCGCTGGCCGCATGTTGGCTTGATAGCGC
GGTTGCACCTAGGCGTTGATGCAACCAGTTGCCAAGCGGAAAGGAATTTT
TCCGCCCTCAAGTTGATCGTTAGC