mRNA_P-littoralis_Contig1036.29.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1036.29.1
Unique NamemRNA_P-littoralis_Contig1036.29.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1036.29.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1036contigP-littoralis_Contig1036:71295..71892 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size162
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size156
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789372.5036137-UTR-P-littoralis_Contig1036:71294..712981680789372.5036137-UTR-P-littoralis_Contig1036:71294..71298Pylaiella littoralis U1_48UTRP-littoralis_Contig1036 71295..71298 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789372.5141966-CDS-P-littoralis_Contig1036:71298..713761680789372.5141966-CDS-P-littoralis_Contig1036:71298..71376Pylaiella littoralis U1_48CDSP-littoralis_Contig1036 71299..71376 +
1680789372.5262992-CDS-P-littoralis_Contig1036:71814..718921680789372.5262992-CDS-P-littoralis_Contig1036:71814..71892Pylaiella littoralis U1_48CDSP-littoralis_Contig1036 71815..71892 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1036.29.1prot_P-littoralis_Contig1036.29.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1036 71299..71892 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1036.29.1

>prot_P-littoralis_Contig1036.29.1 ID=prot_P-littoralis_Contig1036.29.1|Name=mRNA_P-littoralis_Contig1036.29.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=52bp
MERVAFCTKEFPGRHTAEKIEPWLRQVTVDAFGGIVGAEHCEPSNIYISA
TV
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mRNA from alignment at P-littoralis_Contig1036:71295..71892+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1036.29.1 ID=mRNA_P-littoralis_Contig1036.29.1|Name=mRNA_P-littoralis_Contig1036.29.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=598bp|location=Sequence derived from alignment at P-littoralis_Contig1036:71295..71892+ (Pylaiella littoralis U1_48)
TGGTATGGAGCGTGTGGCGTTCTGCACGAAGGAGTTCCCCGGAAGGCATA
CTGCAGAGAAGATCGAGCCATGGCTTCGACAGGTGACACTCCATGTTATT
TTTTAGGGCTGTGGTGTAATTCTTTGATTTTTTGTTGTTGTTTTCAATAC
GTTGTTTTTGGTGTATGTATCCACCACGCTGTGTGTCCTTGCCTCTACCT
TCCAAAAAACAAAACACGCATTTGGTAAGCTACAAACAAGTCAGGTGTTC
GGCTCAACAACATCGTGTTCGGGTTCGTTTTTGCAAGTTTATTGGTGGCG
CACACATAATGTTGCTCTCTGGGTAGGTTTCATGTGGTGGTGAGTCCGAA
CAACAATGGAGGGAGCGGATAGAGCGCTGCTGTGTCGGCGTGCATGTATT
CGATTTGATGTGTGCGTGTTAGTATTTCGTATTTCTCTTTTGGCCGTGTC
TGTCGCGAGTGTTGAAAGAAAAACAACTGCACTCCCACATTCTTCACCTC
TGCTCGCCGTGCGTGAACAGGTTACCGTTGACGCTTTTGGCGGTATCGTA
GGAGCCGAGCACTGCGAGCCATCAAACATCTACATCTCTGCCACGGTC
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Coding sequence (CDS) from alignment at P-littoralis_Contig1036:71295..71892+

>mRNA_P-littoralis_Contig1036.29.1 ID=mRNA_P-littoralis_Contig1036.29.1|Name=mRNA_P-littoralis_Contig1036.29.1|organism=Pylaiella littoralis U1_48|type=CDS|length=156bp|location=Sequence derived from alignment at P-littoralis_Contig1036:71295..71892+ (Pylaiella littoralis U1_48)
ATGGAGCGTGTGGCGTTCTGCACGAAGGAGTTCCCCGGAAGGCATACTGC
AGAGAAGATCGAGCCATGGCTTCGACAGGTTACCGTTGACGCTTTTGGCG
GTATCGTAGGAGCCGAGCACTGCGAGCCATCAAACATCTACATCTCTGCC
ACGGTC
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