mRNA_P-littoralis_Contig1036.27.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1036.27.1
Unique NamemRNA_P-littoralis_Contig1036.27.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1036.27.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1036contigP-littoralis_Contig1036:69840..70968 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size525
Hectar predicted targeting categoryother localisation
Exons2
Cds size507
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789371.8668082-UTR-P-littoralis_Contig1036:69839..698551680789371.8668082-UTR-P-littoralis_Contig1036:69839..69855Pylaiella littoralis U1_48UTRP-littoralis_Contig1036 69840..69855 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789371.8777263-CDS-P-littoralis_Contig1036:69855..702821680789371.8777263-CDS-P-littoralis_Contig1036:69855..70282Pylaiella littoralis U1_48CDSP-littoralis_Contig1036 69856..70282 +
1680789371.8857136-CDS-P-littoralis_Contig1036:70888..709681680789371.8857136-CDS-P-littoralis_Contig1036:70888..70968Pylaiella littoralis U1_48CDSP-littoralis_Contig1036 70889..70968 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1036.27.1prot_P-littoralis_Contig1036.27.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1036 69856..70968 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1036.27.1

>prot_P-littoralis_Contig1036.27.1 ID=prot_P-littoralis_Contig1036.27.1|Name=mRNA_P-littoralis_Contig1036.27.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=169bp
MADPTGGGAAQPVSQPTEPSSRLIIGGVPVQVVGAGKGRSKQTSAIWKHV
VEFTPATASGKNIKCMVKHKLPAVNNVPAREVTCGFLMKYVRADASKGIS
SGGTNGMWKHFRDKHKHIREEEMPKSSHSTEGKKRKASLLAGVQQAQASA
GKGPMDKHMITSLGKAQQE
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mRNA from alignment at P-littoralis_Contig1036:69840..70968+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1036.27.1 ID=mRNA_P-littoralis_Contig1036.27.1|Name=mRNA_P-littoralis_Contig1036.27.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1129bp|location=Sequence derived from alignment at P-littoralis_Contig1036:69840..70968+ (Pylaiella littoralis U1_48)
CACGAACACACACTCTATGGCGGACCCTACCGGCGGCGGCGCTGCCCAGC
CTGTGTCACAGCCAACAGAGCCATCCAGTCGGTTGATAATTGGCGGTGTT
CCCGTACAAGTGGTCGGTGCTGGGAAAGGGAGAAGCAAGCAGACCTCTGC
GATTTGGAAGCATGTCGTAGAGTTCACGCCAGCCACGGCAAGTGGCAAGA
ACATCAAGTGCATGGTCAAACACAAGCTTCCCGCGGTGAACAACGTTCCA
GCACGCGAAGTGACGTGCGGCTTCTTGATGAAGTACGTCCGAGCTGACGC
CAGCAAAGGGATCTCCAGCGGAGGGACGAACGGCATGTGGAAGCACTTCC
GCGACAAGCACAAACACATCCGCGAGGAAGAGATGCCAAAGAGCTCGCAC
AGCACCGAAGGGAAAAAGAGGAAGGCGAGCCTCCTTGCCGGAGGTAAGAG
TGCGAAGAGTGAGGGGCTACTGCAGTATCGCCTGCGTTAGCAGTGGTTGG
GTGTGATTTGTGTGGTGCTTTAGTTTGATGTGTACCACATGCGTCGCACA
CGCTGTGCGCTGTTTTGTTTTTTTTGTAGACTTTGGACTTTTCAAACTTT
TGACCGATCATACGGAAGACAACACCCCCAAAAGACATTTGTTTTTTTTA
AACTCACTTGCTTGTTGCTCTCAAAACACCGATCTTGGACGTTTTTGAGT
TAGAGTCTGGACTATGCGTACACAACAACCTCCTGGAACACCCTAACGCT
GTTTCACATTTTAGATTTTAGCGTTTTTTGGTTGAACGCAGATATATAGA
TAAACTTAAATATTTTTATATTTTTACTGTTTATTTTGTACCGGTTTTGT
ATTTTGTTTCCCACGGTAGTTATGTGTTGCGGCCTGTGCATTTTTTATCA
TTTTTTAACACTTCATTGCTACCTGTACTTGTATCACTTTTCATTTTGTG
TTAAATTCAAGCCCGTGCTGACCACACACCGTGTTGGTTCTCTCTCGCTC
TCTTGTCTCTTTCAACCCTTTCCCCGCCTCCCTGTCTTGTGTGGATCAGT
CCAGCAAGCACAAGCGAGCGCAGGCAAAGGGCCGATGGACAAACACATGA
TCACTTCGCTTGGCAAGGCCCAACAAGAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig1036:69840..70968+

>mRNA_P-littoralis_Contig1036.27.1 ID=mRNA_P-littoralis_Contig1036.27.1|Name=mRNA_P-littoralis_Contig1036.27.1|organism=Pylaiella littoralis U1_48|type=CDS|length=507bp|location=Sequence derived from alignment at P-littoralis_Contig1036:69840..70968+ (Pylaiella littoralis U1_48)
ATGGCGGACCCTACCGGCGGCGGCGCTGCCCAGCCTGTGTCACAGCCAAC
AGAGCCATCCAGTCGGTTGATAATTGGCGGTGTTCCCGTACAAGTGGTCG
GTGCTGGGAAAGGGAGAAGCAAGCAGACCTCTGCGATTTGGAAGCATGTC
GTAGAGTTCACGCCAGCCACGGCAAGTGGCAAGAACATCAAGTGCATGGT
CAAACACAAGCTTCCCGCGGTGAACAACGTTCCAGCACGCGAAGTGACGT
GCGGCTTCTTGATGAAGTACGTCCGAGCTGACGCCAGCAAAGGGATCTCC
AGCGGAGGGACGAACGGCATGTGGAAGCACTTCCGCGACAAGCACAAACA
CATCCGCGAGGAAGAGATGCCAAAGAGCTCGCACAGCACCGAAGGGAAAA
AGAGGAAGGCGAGCCTCCTTGCCGGAGTCCAGCAAGCACAAGCGAGCGCA
GGCAAAGGGCCGATGGACAAACACATGATCACTTCGCTTGGCAAGGCCCA
ACAAGAA
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