mRNA_P-littoralis_Contig1036.25.3 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig1036.25.3 vs. uniprot
Match: A0A6H5KM30_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KM30_9PHAE) HSP 1 Score: 393 bits (1010), Expect = 3.610e-122 Identity = 214/345 (62.03%), Postives = 245/345 (71.01%), Query Frame = 1
Query: 142 RWAFSYTRLNMHLAAAAAASGGCIVVDSTRAGKRFPDSLTATV-------------------------------------PIWCCLLNRLAAPESDDH-----SSLGSGRGDE--ERTAPGEKGNKSAWDTALHAPRWLSASEAGQIEERIPGWIEGLGNARGMLSKRLKSFLKKPLRAVWLNPESRLVEGMVPACPAADLSFTPVICVSASKVITPERHREHHSWTYIQGAGDDEEHWSCGISPEKFWANSERLVDLAKGGDKIAFEEAVATLQLRHKKIDSGSVSGGSAERRPQSGS-RNGGAPTEGNTSNAEGSGNDGMEQPWQPGGPELHAVLGATGEEAG 1041
RWAFSYTRLN+HLAAAAAA+GGCIVVDSTRAGKRFPDS T TV PIWCCLLNRLAAP +DD +S+G R E E+ + K N + WDTALH PRWLSASEA QIEER+PGWI+GLGNA+ LS+RL+SFLKKPLRAVWL+PESRLVE M+PAC AADLSFTPVICVSASKVI PERHREHHSW Y+QGAGDDEEHWS GI+PE+FWANSERL+ LAK GD+ AFE +A L R+KK+++ S G E R SG+ R+ PT G S+ E +DG E+PWQPGGPE+HAVLGATG G
Sbjct: 3 RWAFSYTRLNIHLAAAAAAAGGCIVVDSTRAGKRFPDSFTTTVRTHHDFGFANVCFILRSATAQHVLRRKGGAWPLAKEVPIWCCLLNRLAAPTNDDSGTPSSASIGGERSSEKFEQGSCPRKENGNFWDTALHTPRWLSASEASQIEERMPGWIQGLGNAKEALSERLRSFLKKPLRAVWLSPESRLVERMLPACSAADLSFTPVICVSASKVIAPERHREHHSWIYLQGAGDDEEHWSSGITPEQFWANSERLIGLAKRGDRGAFEGVIAALITRNKKMNASSPCAGGTESRSGSGAARSEETPTGGGPSSTER--HDGGEEPWQPGGPEVHAVLGATGLVVG 345
BLAST of mRNA_P-littoralis_Contig1036.25.3 vs. uniprot
Match: D7G7K2_ECTSI (Transferase, transferring pentosyl groups, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7K2_ECTSI) HSP 1 Score: 248 bits (633), Expect = 2.150e-69 Identity = 129/195 (66.15%), Postives = 146/195 (74.87%), Query Frame = 1
Query: 460 IPGWIEGLGNARGMLSKRLKSFLKKPLRAVWLNPESRLVEGMVPACPAADLSFTPVICVSASKVITPERHREHHSWTYIQGAGDDEEHWSCGISPEKFWANSERLVDLAKGGDKIAFEEAVATLQLRHKKIDSGSVSGGSAERRPQSGSRNGGAPTEGNTSNAEGSGNDGMEQ-PWQPGGPELHAVLGATGEEAG 1041
+PGWI+GLGNAR LS+RL+SFLKKPLRAVWL+PESRLVEGM+PAC AADLSFTPVICVSASKVITPERHREHHSWTY+QGAGDDEEHWS GI+PE+FWAN ERL+ LAKGGD+ AFE VA L R+KK+++ S G E R SG+ PWQPGGPE+HAVLGATG G
Sbjct: 1 MPGWIQGLGNAREALSERLRSFLKKPLRAVWLSPESRLVEGMLPACSAADLSFTPVICVSASKVITPERHREHHSWTYLQGAGDDEEHWSSGITPEQFWANCERLMGLAKGGDRGAFEGVVAALITRNKKMNASSPCAGGTESRSGSGAXXXXXXXXXXXXXXXXXXXXXXXXXPWQPGGPEVHAVLGATGLVVG 195
BLAST of mRNA_P-littoralis_Contig1036.25.3 vs. uniprot
Match: D7G7K1_ECTSI (Rit1_C domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7K1_ECTSI) HSP 1 Score: 233 bits (594), Expect = 1.170e-68 Identity = 114/148 (77.03%), Postives = 121/148 (81.76%), Query Frame = 1
Query: 1 QFVSGLVAAYRREGCDYPVFANLRNGLWYGKDWSGTCYFKSTDGHSRRWAFSYTRLNMHLAAAAAASGGCIVVDSTRAGKRFPDSLTATVPIWCCLLNRLAAPESDDHSSLGS--------GRGDEERTAPGEKGNKSAWDTALHAPR 420
QFVSGLV AYRR G YPVFANLRNGLWYGKDW GTCYFKSTDGHSRRWAFSYTRLN+HLAAAAAA+GGCIVVDSTRAGKRFPDS TATVPIWCCLLNRLAAP +DD + S G DEER+ PG + + S WDTALH PR
Sbjct: 11 QFVSGLVEAYRRSGAAYPVFANLRNGLWYGKDWDGTCYFKSTDGHSRRWAFSYTRLNIHLAAAAAAAGGCIVVDSTRAGKRFPDSFTATVPIWCCLLNRLAAPTNDDSGTASSASIVGELSGEEDEERSCPG-RDSGSFWDTALHTPR 157
BLAST of mRNA_P-littoralis_Contig1036.25.3 vs. uniprot
Match: A0A061GLF0_THECC (Initiator tRNA phosphoribosyl transferase family protein isoform 4 n=2 Tax=Theobroma cacao TaxID=3641 RepID=A0A061GLF0_THECC) HSP 1 Score: 216 bits (549), Expect = 5.960e-59 Identity = 116/251 (46.22%), Postives = 153/251 (60.96%), Query Frame = 1
Query: 52 PVFANLRNGLWYGKDWSGTCYFKSTDGHSRRWAFSYTRLNMHLAAAAAASGGCIVVDSTRAGKRFPDSLTATVPIWCCLLNRL-------AAPESDDHSSLGSGRGDEERTAPGEKGNKSAWDTALHAPRWLSASEAGQIEERIPGWIEGLGNARGMLSKRLKSFLKKPLRAVWLNPESRLVEGMVPACPAADLSFTPVICVSASKV--ITPERHREHHSWTYIQGAGDDEEHWSCGISPEKFWANSERLV 777
P+ ANLR GLWY ++ TCYFKSTDGH+ W+F+ +RLN H+A A GGCI+VDSTR GKRFPDS++ T+PIW C+LNR + ES+D SL ER + + N WD +LH P W+S +E IE+R+ GW + L NA G L S LKKPLR +W++ ++ + VP + D FTP+I VSAS +T R SW YI GAGDDEE W+ G+SP FW ++ L+
Sbjct: 48 PLVANLRCGLWYSPNFQSTCYFKSTDGHTNNWSFNTSRLNFHIALLAGQKGGCIIVDSTRRGKRFPDSMSKTIPIWTCVLNRSVFNYLNKSRNESNDDGSL------LERDSDAGQ-NSVDWDCSLHLPLWVSGTEKAAIEDRLEGWTKDL-NASGADIAALASCLKKPLRPLWISQKTVIWINEVPDHDSWD--FTPIILVSASSSTGVTQHRTTSEFSWNYIPGAGDDEESWARGLSPNLFWNHAYDLI 288
BLAST of mRNA_P-littoralis_Contig1036.25.3 vs. uniprot
Match: A0A061GMS2_THECC (Initiator tRNA phosphoribosyl transferase family protein isoform 2 n=1 Tax=Theobroma cacao TaxID=3641 RepID=A0A061GMS2_THECC) HSP 1 Score: 216 bits (549), Expect = 1.490e-58 Identity = 116/251 (46.22%), Postives = 153/251 (60.96%), Query Frame = 1
Query: 52 PVFANLRNGLWYGKDWSGTCYFKSTDGHSRRWAFSYTRLNMHLAAAAAASGGCIVVDSTRAGKRFPDSLTATVPIWCCLLNRL-------AAPESDDHSSLGSGRGDEERTAPGEKGNKSAWDTALHAPRWLSASEAGQIEERIPGWIEGLGNARGMLSKRLKSFLKKPLRAVWLNPESRLVEGMVPACPAADLSFTPVICVSASKV--ITPERHREHHSWTYIQGAGDDEEHWSCGISPEKFWANSERLV 777
P+ ANLR GLWY ++ TCYFKSTDGH+ W+F+ +RLN H+A A GGCI+VDSTR GKRFPDS++ T+PIW C+LNR + ES+D SL ER + + N WD +LH P W+S +E IE+R+ GW + L NA G L S LKKPLR +W++ ++ + VP + D FTP+I VSAS +T R SW YI GAGDDEE W+ G+SP FW ++ L+
Sbjct: 48 PLVANLRCGLWYSPNFQSTCYFKSTDGHTNNWSFNTSRLNFHIALLAGQKGGCIIVDSTRRGKRFPDSMSKTIPIWTCVLNRSVFNYLNKSRNESNDDGSL------LERDSDAGQ-NSVDWDCSLHLPLWVSGTEKAAIEDRLEGWTKDL-NASGADIAALASCLKKPLRPLWISQKTVIWINEVPDHDSWD--FTPIILVSASSSTGVTQHRTTSEFSWNYIPGAGDDEESWARGLSPNLFWNHAYDLI 288
BLAST of mRNA_P-littoralis_Contig1036.25.3 vs. uniprot
Match: A0A061GNH0_THECC (Initiator tRNA phosphoribosyl transferase family protein isoform 1 n=8 Tax=Malvaceae TaxID=3629 RepID=A0A061GNH0_THECC) HSP 1 Score: 216 bits (549), Expect = 7.960e-58 Identity = 116/251 (46.22%), Postives = 153/251 (60.96%), Query Frame = 1
Query: 52 PVFANLRNGLWYGKDWSGTCYFKSTDGHSRRWAFSYTRLNMHLAAAAAASGGCIVVDSTRAGKRFPDSLTATVPIWCCLLNRL-------AAPESDDHSSLGSGRGDEERTAPGEKGNKSAWDTALHAPRWLSASEAGQIEERIPGWIEGLGNARGMLSKRLKSFLKKPLRAVWLNPESRLVEGMVPACPAADLSFTPVICVSASKV--ITPERHREHHSWTYIQGAGDDEEHWSCGISPEKFWANSERLV 777
P+ ANLR GLWY ++ TCYFKSTDGH+ W+F+ +RLN H+A A GGCI+VDSTR GKRFPDS++ T+PIW C+LNR + ES+D SL ER + + N WD +LH P W+S +E IE+R+ GW + L NA G L S LKKPLR +W++ ++ + VP + D FTP+I VSAS +T R SW YI GAGDDEE W+ G+SP FW ++ L+
Sbjct: 48 PLVANLRCGLWYSPNFQSTCYFKSTDGHTNNWSFNTSRLNFHIALLAGQKGGCIIVDSTRRGKRFPDSMSKTIPIWTCVLNRSVFNYLNKSRNESNDDGSL------LERDSDAGQ-NSVDWDCSLHLPLWVSGTEKAAIEDRLEGWTKDL-NASGADIAALASCLKKPLRPLWISQKTVIWINEVPDHDSWD--FTPIILVSASSSTGVTQHRTTSEFSWNYIPGAGDDEESWARGLSPNLFWNHAYDLI 288
BLAST of mRNA_P-littoralis_Contig1036.25.3 vs. uniprot
Match: A0A2R6XUT9_MARPO (Uncharacterized protein n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6XUT9_MARPO) HSP 1 Score: 216 bits (550), Expect = 1.780e-57 Identity = 120/278 (43.17%), Postives = 167/278 (60.07%), Query Frame = 1
Query: 4 FVSGLVAAYRREGCDYPVFANLRNGLWYGKDWSGTCYFKSTDGHSRRWAFSYTRLNMHLAAAAAASGGCIVVDSTRAGKRFPDSLTATVPIWCCLLNR-------LAAPESDDHSSLGSGRG--DEERTAPGEKGN---KSAWDTALHAPRWLSASEAGQIEERIPGWIEGLGNARGMLSKRLKSFLKKPLRAVWLNPESRLVEGMVPACPAADLSFTPVICVSASK--VITPERHREHHSWTYIQGAGDDEEHWSCGISPEKFWANSERLVDLAKGG 795
FVS + +R + P+ ANLR GLWY D+ GTCYFKSTDGH+ W+F+ R+N+H+A AA GGC +VD+TR GKRFPD+++ T+PIW C+LNR L A E D S+ +G G + + G+ GN ++ WD +LH P W+S E G IE RI W+E L + L K+ LKKPLR +W++ S + +P + SFTP+I VSAS+ + T E SW+YI GA DDEE W+ G++P FW + +D+ +GG
Sbjct: 40 FVSEIRHLWR----ELPLLANLRCGLWYSSDFDGTCYFKSTDGHNGNWSFNTGRMNLHVAMLAAERGGCFIVDATRKGKRFPDAMSKTIPIWACVLNRALADYRTLHAQEMLDPSAEQTGNGHLENDSRGGGKTGNSDLENDWDCSLHLPVWISHVEKGNIESRIQSWVESLKSTVVDLETLAKT-LKKPLRPLWISQSSVIWLNELPE--VDEWSFTPIILVSASRPSIFTQRYTDEDFSWSYIPGAADDEESWARGLTPALFWTHH---LDILEGG 307
BLAST of mRNA_P-littoralis_Contig1036.25.3 vs. uniprot
Match: A0A0G4AMV2_9ROSI (Initiator tRNA phosphoribosyl transferase family protein n=13 Tax=Pelargonium TaxID=4030 RepID=A0A0G4AMV2_9ROSI) HSP 1 Score: 213 bits (542), Expect = 1.230e-56 Identity = 111/251 (44.22%), Postives = 148/251 (58.96%), Query Frame = 1
Query: 46 DYPVFANLRNGLWYGKDWSGTCYFKSTDGHSRRWAFSYTRLNMHLAAAAAASGGCIVVDSTRAGKRFPDSLTATVPIWCCLLNRLAA---PESDDHSSLGSGRGDE-------ERTAPGEKGNKSAWDTALHAPRWLSASEAGQIEERIPGWIEGLGNARGMLSKRLKSFLKKPLRAVWLNPESRLVEGMVPACPAADLSFTPVICVSASKVITPERHR--EHHSWTYIQGAGDDEEHWSCGISPEKFWAN 762
+ P+ ANLR GLWY + TCYFKSTDGH++ W+F+ +RLN+H+A A GGCI+VDSTR GKRFPDS++ T+PIW C+ NR DH G + ++ A + WD++LH P W+S +E IEER+ GW + L A G L S LKKPLR +W++ ++ + VP + D FTP+I VSAS +HR SW YI GAGDDEE W+ G+SP+ FW N
Sbjct: 46 ELPLLANLRCGLWYSPKFDSTCYFKSTDGHTKNWSFNTSRLNLHVAHIAGQKGGCIIVDSTRKGKRFPDSMSKTIPIWTCVFNRAIVNHRSRMQDHDERAEGVSSDNHESETSDQHAENTRQASHEWDSSLHLPLWVSKTERASIEERLEGWTKEL-EASGADIASLASCLKKPLRPLWISQKTVIWLNEVPDHDSWD--FTPIILVSASSSTGVIQHRTTSEFSWNYIPGAGDDEESWARGLSPDLFWKN 293
BLAST of mRNA_P-littoralis_Contig1036.25.3 vs. uniprot
Match: A0A0G4ANA0_9ROSI (Initiator tRNA phosphoribosyl transferase family protein n=1 Tax=Monsonia emarginata TaxID=28966 RepID=A0A0G4ANA0_9ROSI) HSP 1 Score: 212 bits (540), Expect = 1.770e-56 Identity = 111/251 (44.22%), Postives = 152/251 (60.56%), Query Frame = 1
Query: 46 DYPVFANLRNGLWYGKDWSGTCYFKSTDGHSRRWAFSYTRLNMHLAAAAAASGGCIVVDSTRAGKRFPDSLTATVPIWCCLLNRLAAPES---DDHSSLGSGRGD-EERTAPGEKGNKSAWDTALHAPRWLSASEAGQIEERIPGWIEGLGNARGMLSKRLKSFLKKPLRAVWLNPESRLVEGMVPACPAADLSFTPVICVSASKVITPERHR--EHHSWTYIQGAGDDEEHWSCGISPEKFWANSERLVD 780
D P+ ANLR GLWY + + CYFKSTDGH+ W+F+ +RLN+H+A A GGCI+VDSTR GKRFPDS++ T+PIW C+ NR A +H L G + + A + N WD++LH P W+S +E I++R+ W + L A G L S LKKPLR +W++ ++ + VP + D FTP+I VSAS +HR SW YI GAGDDEE W+ G+SPE FW N+ +++
Sbjct: 46 DLPLLANLRCGLWYSQKFHSHCYFKSTDGHTNNWSFNTSRLNLHVAHLAGQKGGCIIVDSTRKGKRFPDSMSKTIPIWTCVFNRAIANHRRRMQNHHELMEGEPNMSDEHAENSRQNSHDWDSSLHLPLWVSETEKASIQDRLEEWTKEL-EASGADIASLASCLKKPLRPLWISQKTVIWLNEVPDHDSWD--FTPIILVSASSSTGFIQHRTTSEFSWNYIPGAGDDEESWARGLSPELFWNNAYDIIN 293
BLAST of mRNA_P-littoralis_Contig1036.25.3 vs. uniprot
Match: A0A6A1VPL7_9ROSI (Rit1_C domain-containing protein n=1 Tax=Morella rubra TaxID=262757 RepID=A0A6A1VPL7_9ROSI) HSP 1 Score: 208 bits (529), Expect = 2.170e-56 Identity = 112/251 (44.62%), Postives = 156/251 (62.15%), Query Frame = 1
Query: 52 PVFANLRNGLWYGKDWSGTCYFKSTDGHSRRWAFSYTRLNMHLAAAAAASGGCIVVDSTRAGKRFPDSLTATVPIWCCLLNRLAAPESDD-HSSLGSGRGDEERTAPGEKGNKSA------WDTALHAPRWLSASEAGQIEERIPGWIEGLGNARGMLSKRLKSFLKKPLRAVWLNPESRLVEGMVPACPAADLSFTPVICVSASKVITPERHRE--HHSWTYIQGAGDDEEHWSCGISPEKFWANSERLV 777
P+ ANLR GLWY + TCYFKSTDGH+ W+FS +RLN+H+A A GGCI+VDSTR GKRFPDS++ T+PIW C+LNR ++ HS++ + D++ T +K ++S WD++LH P W+S +E IE+ + W L +A G L SFLKKPLR +W++ ++ + VP + D FTP+I VSAS +H+ SW YI GAGDDEE W+ G+SP FW ++ L+
Sbjct: 52 PLLANLRCGLWYSPKFHSTCYFKSTDGHTNNWSFSTSRLNLHVAHLAGQKGGCIIVDSTRRGKRFPDSMSKTIPIWTCVLNRSIGKYWNELHSTVQT---DQDSTTS-DKYDRSTRQVSVDWDSSLHLPLWVSETEKAVIEDHLEEWTRQL-DASGADIASLASFLKKPLRPLWISQKTVIWLNEVPDHDSWD--FTPIILVSASSSSALIQHKSVSEFSWNYIPGAGDDEESWARGLSPSLFWNHAYELI 295 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1036.25.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig1036.25.3 >prot_P-littoralis_Contig1036.25.3 ID=prot_P-littoralis_Contig1036.25.3|Name=mRNA_P-littoralis_Contig1036.25.3|organism=Pylaiella littoralis U1_48|type=polypeptide|length=291bp MHLAAAAAASGGCIVVDSTRAGKRFPDSLTATVPIWCCLLNRLAAPESDDback to top mRNA from alignment at P-littoralis_Contig1036:52922..62101- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig1036.25.3 ID=mRNA_P-littoralis_Contig1036.25.3|Name=mRNA_P-littoralis_Contig1036.25.3|organism=Pylaiella littoralis U1_48|type=mRNA|length=9180bp|location=Sequence derived from alignment at P-littoralis_Contig1036:52922..62101- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig1036:52922..62101- >mRNA_P-littoralis_Contig1036.25.3 ID=mRNA_P-littoralis_Contig1036.25.3|Name=mRNA_P-littoralis_Contig1036.25.3|organism=Pylaiella littoralis U1_48|type=CDS|length=873bp|location=Sequence derived from alignment at P-littoralis_Contig1036:52922..62101- (Pylaiella littoralis U1_48)back to top |