mRNA_P-littoralis_Contig1036.23.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1036.23.1
Unique NamemRNA_P-littoralis_Contig1036.23.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1036.23.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1036contigP-littoralis_Contig1036:49584..50510 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size927
Hectar predicted targeting categoryother localisation
Exons1
Cds size519
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789371.9533954-UTR-P-littoralis_Contig1036:49583..497881680789371.9533954-UTR-P-littoralis_Contig1036:49583..49788Pylaiella littoralis U1_48UTRP-littoralis_Contig1036 49584..49788 +
1680789371.9791486-UTR-P-littoralis_Contig1036:50307..505101680789371.9791486-UTR-P-littoralis_Contig1036:50307..50510Pylaiella littoralis U1_48UTRP-littoralis_Contig1036 50308..50510 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789371.9705703-CDS-P-littoralis_Contig1036:49788..503071680789371.9705703-CDS-P-littoralis_Contig1036:49788..50307Pylaiella littoralis U1_48CDSP-littoralis_Contig1036 49789..50307 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1036.23.1prot_P-littoralis_Contig1036.23.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1036 49789..50307 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1036.23.1

>prot_P-littoralis_Contig1036.23.1 ID=prot_P-littoralis_Contig1036.23.1|Name=mRNA_P-littoralis_Contig1036.23.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=173bp
MCSSIAKQGRLDLLQRARENRYIRDEHTRRSAAGGGHLSVLPWARSNGAP
LGRGDVLWCCRVWPPQCPEWAKSNGCPWDENTRNAAALGGHLSALQSAVS
KLCPWSAETCPYAAKGGISASSVGRNPTAATGTRGRASVLPKVATSMSSS
GRDPMGAPGTRGHASLLQQGGI*
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mRNA from alignment at P-littoralis_Contig1036:49584..50510+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1036.23.1 ID=mRNA_P-littoralis_Contig1036.23.1|Name=mRNA_P-littoralis_Contig1036.23.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=927bp|location=Sequence derived from alignment at P-littoralis_Contig1036:49584..50510+ (Pylaiella littoralis U1_48)
CTGGCAGCAAACGCTGATGTCGTGTCGCACCTGGCAGAGCTCGTGGAGGA
CAAGCAGTTCCTGCCCTTCGCCTCGGTATCGAAGATGTGGAGGGATGTAG
GGGGCAACACCGCCCCACGGCAACCACGGTCGTAACGAGTGAGACCTCGG
TGTCTCAGCTGCTGTGCAGCATCGAAGGTGATGTAGGTAAAATTACAGTA
GAACGATGTGCAGTTCCATCGCGAAGCAGGGCAGGCTTGATCTCCTCCAG
CGCGCACGTGAGAACCGCTACATTCGGGACGAGCATACGCGCCGCTCTGC
CGCAGGAGGGGGTCATCTGAGCGTTCTTCCATGGGCGAGGTCCAATGGCG
CCCCCCTGGGACGAGGAGACGTGCTCTGGTGCTGCCGGGTGTGGCCACCT
CAATGTCCTGAGTGGGCGAAATCTAACGGCTGCCCCTGGGACGAAAATAC
TCGCAACGCTGCTGCATTAGGGGGTCATCTGAGTGCTCTTCAATCGGCGG
TTTCCAAACTATGCCCCTGGAGCGCCGAAACTTGCCCGTATGCTGCCAAG
GGGGGCATCTCGGCGTCCTCCGTTGGGCGCAATCCAACGGCCGCCACTGG
GACCAGAGGACGTGCCTCCGTGCTGCCGAAAGTGGCCACCTCGATGTCCT
CAAGTGGGCGCGATCCAATGGGTGCCCCTGGGACCAGAGGACATGCTTCT
CTGCTGCAGCAGGGGGGCATCTAGGCGTTCTTCAATGAGCGAGGTTCAAT
AACTGCCCCTGTGACTCGAGTACATGCTCGAATGCTGCCAAGGGTGGTCA
TCTCGGCGTTCTCCAGTGGGCACGTTCCAACGGCTGCCCTTGGAACGACT
CCACATGCTTCAAAGCTGCCGAAGGAGGTCACGTCGGCTTTCTCCAGTGG
GCGTGGTCCGACGGCTGTCTCTGGGAC
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Coding sequence (CDS) from alignment at P-littoralis_Contig1036:49584..50510+

>mRNA_P-littoralis_Contig1036.23.1 ID=mRNA_P-littoralis_Contig1036.23.1|Name=mRNA_P-littoralis_Contig1036.23.1|organism=Pylaiella littoralis U1_48|type=CDS|length=519bp|location=Sequence derived from alignment at P-littoralis_Contig1036:49584..50510+ (Pylaiella littoralis U1_48)
ATGTGCAGTTCCATCGCGAAGCAGGGCAGGCTTGATCTCCTCCAGCGCGC
ACGTGAGAACCGCTACATTCGGGACGAGCATACGCGCCGCTCTGCCGCAG
GAGGGGGTCATCTGAGCGTTCTTCCATGGGCGAGGTCCAATGGCGCCCCC
CTGGGACGAGGAGACGTGCTCTGGTGCTGCCGGGTGTGGCCACCTCAATG
TCCTGAGTGGGCGAAATCTAACGGCTGCCCCTGGGACGAAAATACTCGCA
ACGCTGCTGCATTAGGGGGTCATCTGAGTGCTCTTCAATCGGCGGTTTCC
AAACTATGCCCCTGGAGCGCCGAAACTTGCCCGTATGCTGCCAAGGGGGG
CATCTCGGCGTCCTCCGTTGGGCGCAATCCAACGGCCGCCACTGGGACCA
GAGGACGTGCCTCCGTGCTGCCGAAAGTGGCCACCTCGATGTCCTCAAGT
GGGCGCGATCCAATGGGTGCCCCTGGGACCAGAGGACATGCTTCTCTGCT
GCAGCAGGGGGGCATCTAG
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