mRNA_P-littoralis_Contig1035.6.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1035.6.1
Unique NamemRNA_P-littoralis_Contig1035.6.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1035.6.1 vs. uniprot
Match: D7G4C6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4C6_ECTSI)

HSP 1 Score: 132 bits (332), Expect = 2.160e-33
Identity = 80/179 (44.69%), Postives = 106/179 (59.22%), Query Frame = 1 
Query:  274 AGEEPQQDSNEVEVVEGGSGTGVPVITPAPVYDKKGERVAGSIGRPPRPSAKPPTKSPRVAKKGPAKKKAALNKPGVDENGNPVDREKKFPRPLVEQEKIALLKSIEAVG-GVKAYASKGCSETSYLWWETNMLQGVIAALRDDETYHDDPKVIFGSIKFFSAIYDWVGSQKTQLGRYL 807
            AGEE   +      V    G G P  +  P    K  R  GS GRPPR            +KKGP+K+KA + +  +D +GN + R+ +FPR L + EK  LL+ I+ +  GV+AY +KG SE SYLWW+ N+L+     L DDE Y +DP+V+FGSI+ FS IYDWVGSQKTQL  Y+
Sbjct:  128 AGEEGXGEVEGSAKVGPNEGEGEPSSSRGPRSSSK-TRTGGSSGRPPR----------HPSKKGPSKRKAEMKQTFLDIDGNEIVRKAEFPRELADIEKKVLLQVIDDLPQGVEAYGAKGVSEASYLWWDCNVLEDTAKTLADDENYQNDPQVLFGSIENFSPIYDWVGSQKTQLSTYV 295
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1035.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G4C6_ECTSI2.160e-3344.69Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1035contigP-littoralis_Contig1035:22942..28503 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size807
Hectar predicted targeting categoryother localisation
Exons5
Cds size807
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789371.6555214-CDS-P-littoralis_Contig1035:22941..231361680789371.6555214-CDS-P-littoralis_Contig1035:22941..23136Pylaiella littoralis U1_48CDSP-littoralis_Contig1035 22942..23136 -
1680789371.669572-CDS-P-littoralis_Contig1035:24276..244021680789371.669572-CDS-P-littoralis_Contig1035:24276..24402Pylaiella littoralis U1_48CDSP-littoralis_Contig1035 24277..24402 -
1680789371.6775508-CDS-P-littoralis_Contig1035:24634..247361680789371.6775508-CDS-P-littoralis_Contig1035:24634..24736Pylaiella littoralis U1_48CDSP-littoralis_Contig1035 24635..24736 -
1680789371.6866007-CDS-P-littoralis_Contig1035:27473..276071680789371.6866007-CDS-P-littoralis_Contig1035:27473..27607Pylaiella littoralis U1_48CDSP-littoralis_Contig1035 27474..27607 -
1680789371.7012541-CDS-P-littoralis_Contig1035:28253..285031680789371.7012541-CDS-P-littoralis_Contig1035:28253..28503Pylaiella littoralis U1_48CDSP-littoralis_Contig1035 28254..28503 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1035.6.1prot_P-littoralis_Contig1035.6.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1035 22942..28503 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1035.6.1

>prot_P-littoralis_Contig1035.6.1 ID=prot_P-littoralis_Contig1035.6.1|Name=mRNA_P-littoralis_Contig1035.6.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=269bp
ADAAAAIVDLQGAGCAGSRGSRASRRVRGVSSLVASNLSQEAPLEGSDGP
AARACTPLRQQRPPSRTASPSLGRWVSKTSGGASAGAGPGGAGEEPQQDS
NEVEVVEGGSGTGVPVITPAPVYDKKGERVAGSIGRPPRPSAKPPTKSPR
VAKKGPAKKKAALNKPGVDENGNPVDREKKFPRPLVEQEKIALLKSIEAV
GGVKAYASKGCSETSYLWWETNMLQGVIAALRDDETYHDDPKVIFGSIKF
FSAIYDWVGSQKTQLGRYL
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mRNA from alignment at P-littoralis_Contig1035:22942..28503-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1035.6.1 ID=mRNA_P-littoralis_Contig1035.6.1|Name=mRNA_P-littoralis_Contig1035.6.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=5562bp|location=Sequence derived from alignment at P-littoralis_Contig1035:22942..28503- (Pylaiella littoralis U1_48)
GCAGATGCAGCTGCGGCTATCGTAGATCTTCAGGGTGCGGGTTGCGCTGG
ATCTCGAGGCTCGAGGGCGAGTCGGCGCGTCCGTGGTGTGTCGTCACTTG
TCGCATCCAACCTTTCCCAAGAGGCGCCACTTGAGGGATCGGACGGCCCA
GCAGCCAGGGCATGCACCCCACTGCGGCAGCAAAGGCCGCCATCTCGCAC
AGCATCGCCATCACTTGGGAGGTGGGTAAGTAAGACCTCGGGCGGCGCCA
GTGGAGGAAGGCGTGAAGGGAAAAAGTCCAAGGTTAGGTTCTGTAGGGTA
CCCACAGATCTATACCGGGGGTAATTACCCTCTGTTTTACCCTACAGAAC
AATTCTGTGAGTTCTGTGCCCGTAGCGCCACAATACCCTACACTTCTGTG
AGTTCTGTGACGGTTGCACCACAATACCCTACACTTCTGTGAGTTATGTA
GCACACACGGTACCCCACAGAGATTACCCTCTTGGTCTGTATACAATACC
CCAGCACTTCTGTGAGTTCTGTGACGGTCATGCCACAATACCCTACACTT
CTGTGAGTTCTGTAGCACATCCCGTACCCCACAGAGATTACCCTCCTGTT
CTGTATGCCGGCGGCACAATTACCCGCGGTACGGGTAAACATTTGTGGAA
CTACCCTCCACATTTGTGATTACCCCGGGATGCTGACGTCAGTCCAACTT
GAAGAATACCCTCAAAAAACACCACACAACACACAGAGCAAGACCCTCCT
TCAGCAGAGAAACAGAACACATCTGGTACATACAGCAGAACAAACACACC
GTACGACACGCGGTATCGGGTTCAGCGGGAGCATGAGCGATGCAGACCTC
AGCGGTAATACGCCAGAGCCCGCGGGCGATGTTCAGGTGGAGGCAGGTGC
AGGCGCAGGCCCAGGTGGCGCCGGCGAGGAACCTCAACAAGATTCAAACG
AGGTAGAGGTTGTTGAAGGAGGTAGCGGTACCGGTGTACCCGTCATCACA
CCGGCGCCCGTCTACGACAAGAAGGGGGAGGTAGTGGAGGTGACCCAGGA
TATCGTCGACGCGGTGGATAAGTTCACGCCGCCCACTGGCTATGTGAGAG
AGGGCTCGCGCGAGAAGTCCTACATAAGGACATCCGCAAGTGTCTGCCGG
CAAAGTTCACCGGCGCGAGGGACGCTGACCTGAACGCCGCTGAGGCCGCC
TTGGACGTGGTGAACAACACCGCGAACGACATTGGCGTGTAGACTGACTG
TCGGGGGGGGGGGTGTTCAGGAGAGACCCCTCTTTGCTTCTCGCTACTGC
TGTTGTGTTGGGAAAAAGTCGGATGGGAACGGAGTTTGCCCCTTGCCTGC
TGGCGAGGAGTAGTCGTGGGGGCGCACCACGAAATCCTAATCCTTTGCAC
TCAGGTTCCTAGCAACGTGAAGTTTTCAGTCTTGATCTTTTTTTCGTCGT
GCAGGTTTTCCCCCTCTGGGAAGTGGAGAGGGTAGATGAAAACGTAACAA
AGTCTAAACGTGAAATGCTTTTTTTATGTTCCATGTTTTTTTTTTAGCAG
TAGTCCTCCGCTGTCACCTGGGAAGTTGAGGACTGGGATACATAGGGGCC
GTACGCAAGCACGCTTCATCTTTTCAAGTCTTGGTTTAGTACCTTGAAAC
CGAGTCGAACCAAGGCAAACAGCAGTGTGCAAATACAGAGACTCGCGCGG
GTACCGAGGGTAATGACCGTCTGTAGTTACCCTACAGATACCCTACAGAG
CCTACCCTGTGAGTTCTGTGACGGTTGCACCACAGTACCCTACACTTCTG
TGAGTTCTGTAGCACACACGGTACCCCACAGATTACCCTCTTGGTCTGTA
TACAATACCCTAACACTTCTGTGGGTTCTGTGACGGTCGTGCCGAAATAC
CCTACACTTCTGTGAGTTCTGTGACGGTTGCACCACAATACCCTACACTT
CTGTGAGTTCTGTAGCACACACGGTACCCCACAGAGATTACCCTCTTGGT
CTGTATACAATACCCCAACACTTCTGTGAGTTCTGTGACGGTCATGCCAC
AATACCCTACACTTCTGTGAGTTCTGTAGCACATCCCGTACCCTACAGGG
ATTACCCTCCTGTTCTGTAACAGATCCAATACCCTACAGAACCTAACGTA
CCCTACAGAACCTAACCTTGAAAAAGTCCGCCGCCGACGAAGGCGAGGAG
GAGGATGAAGCCGGAGGGTCTTCTTCTGCTGCTGAGGTGAGATGATGATG
TGGATACAAATTCAACAAGGCTTCGAGTGCCATACTGCTGTGAGCGAGAA
ATATGGACGCCCGTGTGCTGTGTCCCGTGTGAATGGGTTGCGAGACATGA
TTCACATAAGATTCTCACAGCTCTGCTGTCCCTTCATAGACGGTCAAGAG
GGGGCGACAGCAGTTCATGTGTCACTTCAAAATAAAGCACTCTTTTATTT
TTTACTTCAAATTTTGGCGCGCCCATAATTTACTGCTGGACCGAAATTCA
CAGTACAGCAGTATAAACTTGCTGCAGCTTTCCGGCCTTTCGCGGCATCA
GTTCCCCGGTGTCTCTGCAAAACGATACGTGTGAACTGCTGTTGTATGTT
GTTGGAGCGGCCAATTAAACTGCATTCTTGTTTTTTTTATACATCGCCTT
CTTCAGAGTGCCCACATTTTCAAGGCCAACAGCTTCTTGTTTAGTGCTTT
GAAAAACCTTTTACGAATTGGAGTCAATTGTAGTTGAGTACAGCCCGTAT
TTGCTAACTTTACTTGCCGGCACGACAGAAGCAATGATAATCACAGCAAC
ACCAAGCTGTTGCATGGCATCTCCTTCGCTTTTGTGTTCAGCCGTGTGCG
ACACGGGGACTGGTATGGAGGGTCCACAGGGAGCAGTAGTAGAAAGGACC
GGACATTACATGTATGCACGGCGCAGATGTGTTTCTACGCAAAACTTATC
GTGTCCTCCAAATCACCCTCTGCCCCACCCCTACGAGAGCACGCATTCTT
TGCTCGCGACACCCAAAGCCGCACCGAGTAATGTCGCCAGCGGCTGCATC
TTGTTCATTGGTTCTTACGAAGTTTTTTTGTCATCTCGTGATTTTCGTAG
CACGTTTTTATTTTATTTTGATGTGGGTTAGGTCTACATCAACAAAGCAA
ACTGCTGTTGGCTGCCACCGTGAGCGGGCGCGCAAAAAAGTGCCAGTTTA
GCATTTATCATTCGCCGGCCACGCAAGACTTATTTATGGCTCGCATCTCT
CGCCATTCGCTCCCCTGTCCACACTCATTTCGTCCTTTAACCCCCCCCCT
TCCCACACCTTCCCTCCCGCCCGTCTCCGATTACAGAAAGACGAACCGAT
GGCAGTATCGCCTAACCCGCAGCCCCCGGGAGGTGGATTAGGCAGGCAAC
GGCAGAGGAAGGTGAACATAATGTGCAACACGATCGAACTACAATTGCTG
TGTGACGATGGCATTAGAAGGGGTGGTAACGAAAGTCGCTGAGCATATTG
ACAAAAGTTTGGATCAGGAGAGGTGTGTCCCGCGGTCGTAAATTGTAAAA
GAGATGGCCGGCGACCAATCCCTGTTGGTGATTAAATTGTCGATCATGCT
GTTTATTTCGCTCTTCACAGCTGTGTTTATTTCGTTCTTCACAGCTCGAG
TCCCTGTTCACTCATATCTTTTTCGCAACTGTGACTTTTCTATATTGATA
TTTTTGTCGTATGGCCCTGCAGGTTGAAAAAGCGCACAAAAAAGCTTTGT
GGACGAAGGCCAAGAAGCGGGTGGCCGGCAGCATTGGGAGACCTCCTCGA
CCCAGTGCCAAACCACCAACGAAAAGTCCCAGGGTCGCGAAAAAGGGCCC
GGCAAAAAAGAAAGCAGCGGTGAGAGATAATGCTCACGACACTCCAACGG
CTGTCCCCGTATATCTGTGCGTTGAGAGTAGTATTACTTTGCTCTGCGAT
GCGCTGTTGGAAACGTTAATGTAGATGATCAGCATGATTTGGGTTTGTGC
AGGCAAGTCGACAACTTCTGAAAGCACTTGAACGGATAAGACTGGTTGTC
GCTAAACTTGGCCGTCCTTCCAATTGCGTTGCCCTCGTGTTCCCCCCGCA
GTTAAACAAACCAGGCGTAGACGAGAATGGTAACCCGGTCGACAGGGAAA
AGAAGTTCCCGAGACCCCTAGTGGAACAGGAGAAGATTGCTCTTCTCAAG
TCCATCGAAGCCGTGGGCGGCGTAAAGGTGAGTCATTGTCATGAATTTCA
AGATTGTGTAGTATTGTGAGTTCTGAACGCGGCACAAAGTACCGCAAACC
CCTCTGTTTTCTTTCCGACTGGGGGGGGGGAGGGGGGTTAAACACTACCC
CCGGGGGGGAAATCGTTTCCAGGGGTAATTGTTTGTTTTCTATCTCTTAC
CCTGGGGAATAATCTCCCCGGGAGTAAAGCCAATGCCTTGTTTCTTCTGG
TACAAGAATAGCCCAGAAAAAAAAATGACTGCACGCACAAGCACATGCGT
TTCAGCGGTAAATAACAACACACCACCAAACAACGCGAACAAATACCCCA
AACATCGGCGGTAGGTGGTGAGCGATGCATGCCACTCCATCATCATACCA
AATGCTCTCGTACAAGGGCCGAATGAATGAAAGCGGCTTGTTCGGTCTCA
AGAGTCTGCGCTTTTCCCTCGCAGTAATGTCAAAAGAGAAAGAAAAATCT
CGTACGTTAAAAAAACCAGAAGGGTACTCATCGAAACTAATGCCCCTGCG
GGAAATCGTGTCCAGTGGGGGGGGGCGTTTTTTTTGTTTTTATATCTAGT
TCCCCCGGGGCAAAACCAAGGTTTGATGCTTTTCTGCCGAATAATAGGGG
AGGGGGGGGGGGAGCAAAGGGGGGGGGCGGAGGGGAGGGGGGGCAGTAGG
TTTTACAGTAGTGCTGTTGTGTGTCTGCGCCGTTGAAATAATATGACGCA
CAACCAGTCGGAAACGCGCGCGTGAGTGTGGAGGGCCCACGCTGCGTCCC
TCTCTCTGTTTGAAATTTAGATGCAGCAGCGAGGCAGACCATAACTGACT
AGTTCACACACAGTCAATCAACCTCACGATACCATAACTAAACTGCGTTC
AGATCGCCGACCCACAAACCCAATACGTTCCCGTTCGGTCTTAGGGCTGT
CAAAAGTTGATGTATCGCATGCTTGTTTGGCAGTGTTATGCAGCCCGCCA
AACTGGATAAAGGACCCATATATCACCGGGGAATTAGAAGAAAACTGATG
AGAGCCCATATCTACGCTGATATAAAGGGACTGAGATGTGTTTCGCATCG
ACCCGATATTAACCACTGTCGATCCCATCGACGAATGCTGCCGTCAATCT
TTTCTTCCGTTCCGCAGGCGTACGCCTCGAAGGGCTGCAGCGAGACGTCT
TATCTCTGGTGGGAGACGAACATGCTGCAGGGGGTGATCGCCGCTCTGCG
TGACGACGAGACCTACCATGACGACCCGAAGGTTATTTTCGGGTCGATTA
AGTTCTTCTCCGCCATATACGACTGGGTTGGGTCGCAGAAGACCCAACTC
GGCCGATACCTT
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Coding sequence (CDS) from alignment at P-littoralis_Contig1035:22942..28503-

>mRNA_P-littoralis_Contig1035.6.1 ID=mRNA_P-littoralis_Contig1035.6.1|Name=mRNA_P-littoralis_Contig1035.6.1|organism=Pylaiella littoralis U1_48|type=CDS|length=807bp|location=Sequence derived from alignment at P-littoralis_Contig1035:22942..28503- (Pylaiella littoralis U1_48)
GCAGATGCAGCTGCGGCTATCGTAGATCTTCAGGGTGCGGGTTGCGCTGG
ATCTCGAGGCTCGAGGGCGAGTCGGCGCGTCCGTGGTGTGTCGTCACTTG
TCGCATCCAACCTTTCCCAAGAGGCGCCACTTGAGGGATCGGACGGCCCA
GCAGCCAGGGCATGCACCCCACTGCGGCAGCAAAGGCCGCCATCTCGCAC
AGCATCGCCATCACTTGGGAGGTGGGTAAGTAAGACCTCGGGCGGCGCCA
GTGCAGGCGCAGGCCCAGGTGGCGCCGGCGAGGAACCTCAACAAGATTCA
AACGAGGTAGAGGTTGTTGAAGGAGGTAGCGGTACCGGTGTACCCGTCAT
CACACCGGCGCCCGTCTACGACAAGAAGGGGGAGCGGGTGGCCGGCAGCA
TTGGGAGACCTCCTCGACCCAGTGCCAAACCACCAACGAAAAGTCCCAGG
GTCGCGAAAAAGGGCCCGGCAAAAAAGAAAGCAGCGTTAAACAAACCAGG
CGTAGACGAGAATGGTAACCCGGTCGACAGGGAAAAGAAGTTCCCGAGAC
CCCTAGTGGAACAGGAGAAGATTGCTCTTCTCAAGTCCATCGAAGCCGTG
GGCGGCGTAAAGGCGTACGCCTCGAAGGGCTGCAGCGAGACGTCTTATCT
CTGGTGGGAGACGAACATGCTGCAGGGGGTGATCGCCGCTCTGCGTGACG
ACGAGACCTACCATGACGACCCGAAGGTTATTTTCGGGTCGATTAAGTTC
TTCTCCGCCATATACGACTGGGTTGGGTCGCAGAAGACCCAACTCGGCCG
ATACCTT
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