mRNA_P-littoralis_Contig1033.4.16 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig1033.4.16 vs. uniprot
Match: D7G3L4_ECTSI (PDZ domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3L4_ECTSI) HSP 1 Score: 681 bits (1757), Expect = 2.980e-207 Identity = 716/1548 (46.25%), Postives = 807/1548 (52.13%), Query Frame = 3
Query: 864 VACTLVAFEAGSLGLELEPIVDEEAKRRSRGGRDEESWQGQGHDEEGKXXXXXXXXXXXXXXXRPTK-LGCRVFRVTPEGQAARHGSIHPGDALVVLDGVDVLSAPFDDITGALLGRQGRRRLLGFMGAAAVXXXXXXXXXXXXXXPQKQHPMALSSSSSFSSLMAAPETVTPPQPLPGHTPKAASRSPTYAGPSPAVRNAAAGDDPSVTPLEGSRQDSGVLGNSAAAGRXXXXXXXXXXXXXXXXXXXXXXPETGEKKERRQETTDGGEGGVRVAANSSQRGPESGSGCSGGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEENWGAQQSEAAVXXXXXXXXXXXXXXHPHHRGRSSSFASLLSESRP--GAVELQRERRWEERIPHSRPTIRQXXXXXXXXXXXXXXXXXXXXXGTYGTSXXXXXXXXXXXXXXENDRRHFDGN-----RERRETEQQHVSTARTALRMGGTDVEPGALRVGAGREQRRGRSGVRVGYGNGSGSSSARVVE-ESVGSSWGSSPAATVGRMAT---GGFAAGIRRRDNSNARALDRSRGDSLQRSLAEAMKEKSELAAERAWLLEELQRAKEATLERDGALAGQEVQTDVLRMEVGALEGELRRARQELGASEAGRRELNEAAKRDLARRDREAADLXXXXXXXXXXXXXXADKAAAASAVAAARA-ADKATAVGRVAVEDAR-RRAESAEARAAXAEGRVEAVEEAXXXXXXXXXXXXXEALRRERERREMEVREREEEISALMQRVRDAEGRSRRITEDKQEQLREVEEAAVTSLEVAERRRAEWEEKASAMAVRLREREAEVARKDRARKELEGNLSRIKLQVSEMGQREGSELRRVTGELEVMRKMLSDREARARGETDRLTCRLREEQRRASATTARLRTLEQHARSLETAAAAARQRADAGARKEKEVSERLAEMETERACQEVAVTTLKAQLEELRRGAAAGDAALREAAKLKNLLEGA-LRSAAKTPSDIAAAXXXXXXXXXXXXXXXXXAAEGVEDGRQGEGEPRTSDDRVGAGSLAELADRLKRQAEGFGRELESTREALTTAREENETLRNREKDAAELRSLLDQKRGVSTQLARGAEAARARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGLLKSVSELRSKSKAXXXXXXXXXXXXXXXKADLSVAVDGTSSLEAALDAADVEKAEVVRRLTQQGADYVALLSRLEGTLAELEAVKVALFEGPEKRVSRQRKACVDLFDVLSRSRARSAAETIALLRWRQATAVNAANTAAWPRHRHPRAEPSGQAVPGGSNTXXXXXXXXXXXXXXXXXXXXTSGECFERERSPSHGDATIAGCVSSGGGRPPPGQEAEASPFLLREQLAAAQ-AAAAVARGETDALKSQHAYVLEESRLARSDLACVHLRTRMCGARVLSGVLQKWAARQSARAFWRLGVRER--ESILVARGNSPSCARCGTT-SGSHDTGGSGDCDDNSLAHMLTVQGPTPPSRGEGFCSG---WASPPGSDNANVGEWIHRQPRSA 5441
VACTLVAFE GSLGLELE IVD++ RR H EE +XXX RP + LGCRVFRVTP+GQAARHGS+HPGDALVVLDGVDVLS PF+DIT ALL RQGRRRL+GFMG AAV PQK+ S SSFSSL A PE P A GD XXXXXXXXXXXXXXXXXXXXXX +D G+GGV + AN G XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX E V H R RSSSFASL GA + R ER+PH R + R +GN + +R STA A RE RGRSGV GYG G AR+ ES+GSSWGS AT GRM GG AAG R LD SRG+SLQRSLAEAM++K LAAER WLLEELQRA+EATLERDGALAGQEVQTDVL+MEV AL+GELRRARQELGA EAGRREL+EAAKRDLARRDR+AADL XXXXX XAD AAAA+A ADK RRAES E X XXXXXXXXXXXXX LRRE EEISAL+ RV +E RSRR++EDK E+LREVEEAAV SLE AERRRAEWE KASA+A RLREREAE RKDR K+LEG L R Q SE+ +REGSELRRV GELEVMRK LSDREARAR ET RL RLREE+++A TA LR LEQHA+ LET AARQRA+A ARKEKEVSERLAE ETERACQE+AVTTLKAQLEELRRGAAAGDAALREAAKL+N+LEGA LR P + AA + + GEG L ELA +L+ + + +EL+S R+AL REEN+ L REKDAAELRSLL+QKRGVS +LA GAEAARAR +GL ++V ELR + +A + + A SSLE A+DAA+ E+A+VVRRL ++ D VAL SRLE T++ELEAVK+AL EG V GD S G GR P +A+ LRE +A A AAAA A+ + + LK QHA EESRLARS+LACVHLRTRMCGARVLSGV KWAAR++ARAFWRL S +A G SCARCG +G H GS D DD S + LT++ PT W SP N + GE +PRSA
Sbjct: 151 VACTLVAFEPGSLGLELEAIVDDDKARR--------------HGEEYRXXX------------RPRRRLGCRVFRVTPDGQAARHGSVHPGDALVVLDGVDVLSDPFEDITRALLQRQGRRRLIGFMGVAAVAASA----------PQKRR---APSPSSFSSLTAEPEVAASPP--------------------------ARGDTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---------XSDFGKGGVVLPAN--------------GRRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXERGRVHDHNGEVPAPTALG-------HHPRRSRSSSFASLPPPGSELFGAAAADLDWREAERLPHPRDAAARIQRRRPAAGSMTGC-------------------------------RRVEGNDDLSMKNKRRVSSTVSSTAGLGEAAXXXXXXXXXXEGDARREPERGRSGVPAGYGGG-----ARLASRESLGSSWGS--CATTGRMGAATAGGRAAGG---GLYRGRPLDGSRGESLQRSLAEAMEDKRALAAERDWLLEELQRAREATLERDGALAGQEVQTDVLKMEVAALDGELRRARQELGACEAGRRELHEAAKRDLARRDRDAADLSDALRXXXXXRDRXADAAAAAAATXXXXXXADKXXXXXXXXXXXXXXRRAESTE----XXXXXXXXXXXXXXXXXXXXXXXXXXXLRREXXXXXXXXXXXXEEISALLLRVGASESRSRRLSEDKAERLREVEEAAVKSLEAAERRRAEWENKASAIAARLREREAEGTRKDRVVKDLEGRLGRAHAQTSEVQEREGSELRRVAGELEVMRKALSDREARAREETGRLERRLREEEKKACKNTAGLRKLEQHAKFLETGVVAARQRAEAAARKEKEVSERLAEAETERACQEIAVTTLKAQLEELRRGAAAGDAALREAAKLRNILEGAALRHMGTQP--VVAADCGKSGRRDDTTSGGGSSGKNXXXXXXGEG-------------LVELAKKLQGRTDELDQELDSVRKALAMGREENQALLAREKDAAELRSLLEQKRGVSARLASGAEAARARAERAESQAEKMVADRVSLRAELKAARQQAETNGERAKGLEENVLELRDEIRAMAAKLSDAEAAGAKARTGIDTATCRVSSLEKAMDAAEAERADVVRRLIRKDGDLVALQSRLEETVSELEAVKLALVEGSSNSV----------------------------------------------------------------------------------------------------GDGG-----SGGRGRVPGEAGVQAA---LREGVAGAHVAAAAAAQTKANELKRQHAEAQEESRLARSELACVHLRTRMCGARVLSGVFHKWAARRAARAFWRLRTTSTTGNSPAIAGGVVSSCARCGAAGTGRH---GSLDGDDRSTSAALTIEAPTXXXXXXXXXXXXXXWTSPLSGYNQS-GEGGRERPRSA 1431
BLAST of mRNA_P-littoralis_Contig1033.4.16 vs. uniprot
Match: A0A6H5L7S3_9PHAE (PDZ domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7S3_9PHAE) HSP 1 Score: 666 bits (1718), Expect = 5.350e-201 Identity = 774/1853 (41.77%), Postives = 883/1853 (47.65%), Query Frame = 3
Query: 864 VACTLVAFEAGSLGLELEPIVDEEAKRRSRGGRDEESWQGQGHDEEGKXXXXXXXXXXXXXXXRPTKLGCRVFRVTPEGQAARHGSIHPGDALVVLDGVDVLSAPFDDITGALLGRQGRRRLLGFMGAAAVXXXXXXXXXXXXXXPQKQHPMALSSSSSFSSLMAAPETVTPPQPLPGHTPKAASRSPTYAGPSPAVRNAAAGDDPSVTPLEGSRQDSGVLGNSAAAGRXXXXXXXXXXXXXXXXXXXXXXPETGEKKERRQETTDGGEGGVRVAANSSQRGPESGSGCSGGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEENWGAQQSEAAVXXXXXXXXXXXXXXHPHHRGRSSSFASLLSESRP--GAVELQRERRWEERIPHSRPTIRQXXXXXXXXXXXXXXXXXXXXXGTYGTSXXXXXXXXXXXXXXENDRRHFDGNRERR-ETEQQHVSTARTALRMGGTDVEPGALRVGAGREQRRGRSGVRVGYGNGSGSSSARVVEESVGSSWGSSPAATVGRMAT---GGFAAGIRRRDNSNARALDRSRGDSLQRSLAEAMKEKSELAAERAWLLEELQRAKEATLERDGALAGQEVQTDVLRMEVGALEGELRRARQELGASEAGRRELNEAAKRDLARRDREAADLXXXXXXXXXXXXXXADKAA--AASAVAAARAADKATAVGRVAVEDARRRAESAEARAAXAEGRVEAVEEAXXXXXXXXXXXXXEALRRERERREMEVREREEEISALMQRVRDAEGRSRRITEDKQEQLREVEEAAVTSLEVAERRRAEWEEKASAMAVRLREREAEVARKDRARKELEGNLSRIKLQVSEMGQREGSELRRVTGELEVMRKMLSDREARARGETDRLTCRLREEQRRASATTARLRTLEQHARSLETAAAAARQRADAGARKEKEVSERLAEMETERACQEVAVTTLKAQLEELRRGAAAGDAALREAAKLKNLLEGALRSAAKTPSDIAAAXXXXXXXXXXXXXXXXXAAEGVEDGRQGEGEPRTSDDRVGAG--SLAELADRLKRQAEGFGRELESTREALTTAREENETLRNREKDAAELRSLLDQKRGVSTQLARGAEAARARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGLLKSVSELR----SKSKAXXXXXXXXXXXXXXXKADLSVAVDGTSSLEAALDAADVEKAEVVRRLTQQGADYVALLSRLEGTLAELEAVKVALFEGPEKRVSRQRKACVDLFDVLSRSRARSAAETIALLRWRQATAVNAANTAAWPRHRHPRAEPSGQAVPGGSNTXXXXXXXXXXXXXXXXXXXXTSGECFERERSPSHGDATIAGCVSSGGGRPPPGQEAEASPFLLREQLAAAQAAAAVARGETDALKSQHAYVLEESRLARSDLACVHLRTRMCGARVLSGVLQKWAARQSARAFWRLGVRER--ESILVARGNSPSCARCGTTSGSHDTGGSGDCDDNSLAHMLTVQGPTPPSRG-------EGFCSGWASPPGSDNANVGEWIHRQPRSALEDSRPTSTACASRHQRQQRGRRSGEGGGGFLQDGATITAPLTSPYDSSNAGLFDTEGGGEAMEHEHVRRLERGLVRVAGSXXXXXXXXXXXXXSSRARNTQSPLRGCFSVEPGGNCGDGXXXXXXXXCPDXAAAAEGAGRAVVTTPGSAVAQSCDGAERSFFSTASSEPRYDCLRSGSSSPVWGYAGSCTDGSMDG-MPLDDSDASSGEGXXXXXXXXXXXXXXXXVVPGDRSGERSREPAVSTDGSGGGRGRGVSRDGGGYGGIRDEEQPG-LGLESEVLLSGGGVGGGDSWWALSDDELEV 6347
VACTLVAFE GSLGLELE IVD++ RR H E XXXX +LGCRVFRVTP+GQAARHGS+HPGDALVVLDGVDVLS PF+DIT ALL RQGRRRL+GFMGAA XXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXX G G SGG V H R RSSSFASL GA + R ER+PH R + T G R +GN + R E +++ T + +G G RE R RSGVR +G GS +S ES+GSSWGS AT GRM T GG AAG R LD SRG+SLQRSLAEA+++K LAAER WLLEELQRA+EATLERDGALAGQEVQTDVL+MEV AL+GELRRARQELGA EAGRREL+EAAKRDLARRDR+AA XXXXXXXXXXXXXX AA+A RRAESAEARA X +E XXXXXX ALRRERE EEEISAL+ RV +E RSRR++EDK E+LREVEEAAV SLE AERRRAEWE KASA+A RLREREAE ARKDR K+LEG L R + Q SE+ +REGSELRRV GELEVMRK LSDREARAR ET RL RLRE++++A TTA LR LEQ A+ LET AARQRA+A ARKEKEVSERLAE ETERACQEVAVTTLKAQLEELRRGAAAGDAALRE AKL+ +LEGA T +AA G D + G + + R GAG SL ELA++L+ + + GREL+S R+AL ARE L REKDAAELRSLL+QKRGVS +LA GAEAAR R +GL ++VSELR + +A + + A SSLE A+DAA+ E+A+VVRRLT++ D VAL SRLE TL+ELEAVK+AL EGP V G GG R G+A + + G + A AA A+ E D LK QH EESRLARS+LACVHLRTRMCGARVLSGV KWAAR++A AFWRL S +A SCARCG GS D DD + +LT++ P P S+G SP + + P +TA A XXXXXXXXXXXXX RAR+ SP G FS+ D P + + + AG + + PG D ERSFFSTASSEPRY CLRSG SSP W AGS T GS DG MP+D SDAS GE XXXXXXXXXXX + +P S G G G+G +GLE + +S VGGGDSWWALSD+E EV
Sbjct: 151 VACTLVAFEPGSLGLELEAIVDDDKGRR--------------HGEXXXXXXXPRR-----------RLGCRVFRVTPDGQAARHGSVHPGDALVVLDGVDVLSDPFEDITHALLQRQGRRRLIGFMGAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-------------------------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGIGGSGGG----------------------------------------ERGRVNGHNGEVPAPTALGHHSRRSRSSSFASLPPPGSKLFGAAAADLDWREAERLPHPRDAATRIQRSRPAGGS------------TTGC-------------------RRVEGNDDMRTENKRRFSRTVSSTAGLGEATAAGGGGESDVRREPERERSGVRASFGGGSRLAS----RESLGSSWGSF--ATTGRMGTATAGGRAAGG---GLYRGRPLDGSRGESLQRSLAEALEDKRALAAEREWLLEELQRAREATLERDGALAGQEVQTDVLKMEVAALDGELRRARQELGACEAGRRELHEAAKRDLARRDRDAAXXXXXXXXXXXXXXXXXXXXXXXAATAXXXXXXXXXXXXXXXXXXXXXXRRAESAEARAXXXXEXLEXX----XXXXXXAAVEASGALRREREXXXXXXXXXEEEISALLLRVGASESRSRRLSEDKAERLREVEEAAVKSLEAAERRRAEWENKASAIAARLREREAEGARKDRVVKDLEGRLGRAQAQASEVQEREGSELRRVAGELEVMRKALSDREARAREETGRLERRLREDEKKACKTTAGLRKLEQRAKFLETGIVAARQRAEAAARKEKEVSERLAEAETERACQEVAVTTLKAQLEELRRGAAAGDAALRETAKLRKILEGAALRHVGTQPVVAA----------------DCGKSGRRDDTRSGGGSTSKNGRGGAGGESLVELAEKLQGRTDELGRELDSVRQALAMARERFPALLAREKDAAELRSLLEQKRGVSARLASGAEAARVRAERAESQAKKMVADGVSLRTELKAARQQAETNGERAKGLEENVSELRRVDADEIRAMAAKLSDAEAAEAKARGGIDTATCRVSSLEEAMDAAEAERADVVRRLTRKDGDLVALQSRLEETLSELEAVKLALVEGPSNSV--------------------------------------------------------GDGGGGG--------------------------------RGKIPGEARVQATLGEG----------------VAGAHVVAAAATTAAQAEADELKRQHVEAQEESRLARSELACVHLRTRMCGARVLSGVFHKWAARRAAGAFWRLKTTSTTGNSSAIAGSVVSSCARCGAAGTGRQ--GSLDGDDRPTSAVLTIEAPIPSSQGGXXXXXXXXXXXXXXSPRSGYXXXXXXXXXXXXXAGSDKCGPETTAPAXXXXXXXX-----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRARSMTSPPGGSFSIAWSNGGTDAVT-------PANSTSVDVAGGSGLIAPGVVGVDKGD-TERSFFSTASSEPRYHCLRSGLSSPAWSNAGSWT-GSADGVMPVDMSDAS-GEXXXXXXXXXXXX---------------AAKPVCSDGGGGKSGGQGXXXXXXXXXXXXXXXXXXXVGLEFGLEVS---VGGGDSWWALSDEEAEV 1708
BLAST of mRNA_P-littoralis_Contig1033.4.16 vs. uniprot
Match: A0A6H5L985_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L985_9PHAE) HSP 1 Score: 60.5 bits (145), Expect = 9.990e-7 Identity = 36/51 (70.59%), Postives = 37/51 (72.55%), Query Frame = 3
Query: 5919 RSFFSTASSEPRYDCLRSGSSSPVWGYAGSCTDGSMDG-MPLDDSDASSGE 6068
R FFSTASSEPRY CLRSG SSP W AGS GS DG MP+D SDAS E
Sbjct: 52 RGFFSTASSEPRYHCLRSGFSSPAWSNAGSWV-GSADGVMPVDMSDASGEE 101 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1033.4.16 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig1033.4.16 >prot_P-littoralis_Contig1033.4.16 ID=prot_P-littoralis_Contig1033.4.16|Name=mRNA_P-littoralis_Contig1033.4.16|organism=Pylaiella littoralis U1_48|type=polypeptide|length=2038bp MDSAPRSVLRDRSNDDEIATKSLIRGFMNNGGGGAKQQKKVASSSAPSSIback to top mRNA from alignment at P-littoralis_Contig1033:6909..21936- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig1033.4.16 ID=mRNA_P-littoralis_Contig1033.4.16|Name=mRNA_P-littoralis_Contig1033.4.16|organism=Pylaiella littoralis U1_48|type=mRNA|length=15028bp|location=Sequence derived from alignment at P-littoralis_Contig1033:6909..21936- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig1033:6909..21936- >mRNA_P-littoralis_Contig1033.4.16 ID=mRNA_P-littoralis_Contig1033.4.16|Name=mRNA_P-littoralis_Contig1033.4.16|organism=Pylaiella littoralis U1_48|type=CDS|length=6114bp|location=Sequence derived from alignment at P-littoralis_Contig1033:6909..21936- (Pylaiella littoralis U1_48)back to top |