mRNA_P-littoralis_Contig1033.31.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1033.31.1
Unique NamemRNA_P-littoralis_Contig1033.31.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig1033.31.1 vs. uniprot
Match: A0A6H5K630_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K630_9PHAE)

HSP 1 Score: 110 bits (274), Expect = 3.300e-29
Identity = 58/88 (65.91%), Postives = 69/88 (78.41%), Query Frame = 1
Query:    1 AKERAARGDLNRSLHGRSRANHNRNARRGQDYIASGYRARIMLPITEGERSATMRPSSWNTPAAVLFPRYISYDRPRAAPVVEGSASQ 264
            AKERAARGDLNR L G SRANHNR +R+G D+IASG R +I+LP+T+ ERSATMR  S N  +AV+F RY+S  +PRA P VEG ASQ
Sbjct:   16 AKERAARGDLNRGLRGGSRANHNRTSRKGSDFIASGVRGQIILPVTDEERSATMRAPSRNPASAVMFSRYLSVVKPRADPTVEGGASQ 103          
BLAST of mRNA_P-littoralis_Contig1033.31.1 vs. uniprot
Match: A0A6H5K5X1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5X1_9PHAE)

HSP 1 Score: 118 bits (296), Expect = 3.590e-29
Identity = 62/88 (70.45%), Postives = 72/88 (81.82%), Query Frame = 1
Query:    1 AKERAARGDLNRSLHGRSRANHNRNARRGQDYIASGYRARIMLPITEGERSATMRPSSWNTPAAVLFPRYISYDRPRAAPVVEGSASQ 264
            AKERA RGDL RSLHG SRA HN+NAR+G+D+IASG R RI+LP+T+ ERSATMR  S N  +AV+FPRYIS D+P A PVV GSASQ
Sbjct:  554 AKERAERGDLQRSLHGVSRAKHNQNARKGEDFIASGIRGRIILPVTDAERSATMRAPSKNPASAVMFPRYISIDKPHADPVVGGSASQ 641          
BLAST of mRNA_P-littoralis_Contig1033.31.1 vs. uniprot
Match: A0A6H5KB63_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB63_9PHAE)

HSP 1 Score: 108 bits (270), Expect = 5.020e-29
Identity = 55/76 (72.37%), Postives = 64/76 (84.21%), Query Frame = 1
Query:    1 AKERAARGDLNRSLHGRSRANHNRNARRGQDYIASGYRARIMLPITEGERSATMRPSSWNTPAAVLFPRYISYDRP 228
            AKER ARGDL RSLHG SRANHN+NAR+G+D+IASG R RIMLP+T+ ERSATMR  S N  +AV+FPRYIS D+P
Sbjct:   16 AKERTARGDLQRSLHGVSRANHNKNARKGEDFIASGIRGRIMLPVTDAERSATMRAPSRNPVSAVMFPRYISIDKP 91          
BLAST of mRNA_P-littoralis_Contig1033.31.1 vs. uniprot
Match: A0A6H5KZP5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZP5_9PHAE)

HSP 1 Score: 105 bits (262), Expect = 1.520e-26
Identity = 53/80 (66.25%), Postives = 64/80 (80.00%), Query Frame = 1
Query:   25 DLNRSLHGRSRANHNRNARRGQDYIASGYRARIMLPITEGERSATMRPSSWNTPAAVLFPRYISYDRPRAAPVVEGSASQ 264
            DLNR LHG SRANHNR +R+G D+IASG R +I+LP+T+ ERSATMR  S N  +AV+FPRY+S  +PRA P VEGSASQ
Sbjct:   89 DLNRGLHGGSRANHNRTSRKGNDFIASGVRGQIILPVTDEERSATMRAPSRNPASAVMFPRYLSVVKPRADPTVEGSASQ 168          
BLAST of mRNA_P-littoralis_Contig1033.31.1 vs. uniprot
Match: A0A6H5JS87_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS87_9PHAE)

HSP 1 Score: 103 bits (258), Expect = 2.080e-26
Identity = 53/76 (69.74%), Postives = 64/76 (84.21%), Query Frame = 1
Query:    1 AKERAARGDLNRSLHGRSRANHNRNARRGQDYIASGYRARIMLPITEGERSATMRPSSWNTPAAVLFPRYISYDRP 228
            AKERAARGDL RSLHG SRANHN+N R+G+++IASG R RIMLP+T+ ERSATMR  S N+ +AV+FPRYIS  +P
Sbjct:   81 AKERAARGDLYRSLHGVSRANHNKNERKGEEFIASGIRGRIMLPVTDAERSATMRAPSRNSVSAVMFPRYISIHKP 156          
BLAST of mRNA_P-littoralis_Contig1033.31.1 vs. uniprot
Match: A0A6H5L2C2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2C2_9PHAE)

HSP 1 Score: 97.4 bits (241), Expect = 9.980e-24
Identity = 50/76 (65.79%), Postives = 61/76 (80.26%), Query Frame = 1
Query:    1 AKERAARGDLNRSLHGRSRANHNRNARRGQDYIASGYRARIMLPITEGERSATMRPSSWNTPAAVLFPRYISYDRP 228
            AKERAARGDLNR L G SRANHNR +R+G D+IASG R +I+LP+T+ ERSATMR  S N  +AV+FPRY+S  +P
Sbjct:   91 AKERAARGDLNRGLQGGSRANHNRTSRKGNDFIASGVRGQIILPVTDEERSATMRAPSRNPASAVMFPRYLSVVKP 166          
BLAST of mRNA_P-littoralis_Contig1033.31.1 vs. uniprot
Match: A0A6H5JR14_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR14_9PHAE)

HSP 1 Score: 97.8 bits (242), Expect = 7.830e-22
Identity = 51/86 (59.30%), Postives = 64/86 (74.42%), Query Frame = 1
Query:    1 AKERAARGDLNRSLHGRSRANHNRNARRGQDYIASGYRARIMLPITEGERSATMRPSSWNTPAAVLFPRYISYDRPRAAPVVEGSA 258
            AKER ARGD+ R LHG  RAN+NRNAR+G+D++ASGYRA +MLP+ EGERS  +R  + ++  AVL P YIS   P A PV +GSA
Sbjct:  684 AKERGARGDILRGLHGPCRANYNRNARKGRDFVASGYRAEVMLPVGEGERSVRIRARTKDSDEAVLSPWYISVAAPGATPVADGSA 769          
BLAST of mRNA_P-littoralis_Contig1033.31.1 vs. uniprot
Match: A0A6H5K6I9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6I9_9PHAE)

HSP 1 Score: 94.7 bits (234), Expect = 3.430e-21
Identity = 52/83 (62.65%), Postives = 61/83 (73.49%), Query Frame = 1
Query:    1 AKERAARGDLNRSLHGRSRANHNRNARRGQDYIASGYRARIMLPITEGERSATMRPSSWNTPAAVLFPRYISYDRPRAAPVVE 249
            AKER+ RGDLNR LHG SRAN NRNAR G D+I S YR+RIML +T+ E +  +R  S N+P AVL PRYIS +   AAPVVE
Sbjct:  262 AKERSVRGDLNRGLHGGSRANFNRNARSGNDFIDSDYRSRIMLAVTQAEAAENVRARSRNSPNAVLCPRYISVEPLAAAPVVE 344          
BLAST of mRNA_P-littoralis_Contig1033.31.1 vs. uniprot
Match: A0A6H5K731_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K731_9PHAE)

HSP 1 Score: 88.6 bits (218), Expect = 9.520e-21
Identity = 44/68 (64.71%), Postives = 55/68 (80.88%), Query Frame = 1
Query:   43 HGRSRANHNRNARRGQDYIASGYRARIMLPITEGERSATMRPSSWNTPAAVLFPRYISYDRPRAAPVV 246
            HG SRANH +NAR+G+D+IASG R RIMLP+++ ERSATMR  S +  +AV+FPRYIS D+P A PVV
Sbjct:   43 HGVSRANHIKNARKGEDFIASGIRGRIMLPVSDAERSATMRAPSRDPVSAVMFPRYISIDKPHADPVV 110          
BLAST of mRNA_P-littoralis_Contig1033.31.1 vs. uniprot
Match: D7FZI2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZI2_ECTSI)

HSP 1 Score: 89.0 bits (219), Expect = 1.020e-18
Identity = 50/85 (58.82%), Postives = 58/85 (68.24%), Query Frame = 1
Query:    1 AKERAARGDLNRSLHGRSRANHNRNARRGQDYIASGYRARIMLPITEGERSATMRPSSWNTPAAVLFPRYISYDRPRAAPVVEGS 255
            AKER+ RGDLNR LHG SRAN NRNAR G D+  S YR RIML +T+   +  +R  S N+P AVL PRYIS +   A PVVE S
Sbjct:  934 AKERSVRGDLNRGLHGGSRANFNRNARSGDDFNVSDYRGRIMLAVTQAVAAENVRSRSRNSPNAVLCPRYISVEPLAATPVVETS 1018          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1033.31.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A6H5K630_9PHAE3.300e-2965.91Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K5X1_9PHAE3.590e-2970.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KB63_9PHAE5.020e-2972.37Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KZP5_9PHAE1.520e-2666.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JS87_9PHAE2.080e-2669.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L2C2_9PHAE9.980e-2465.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JR14_9PHAE7.830e-2259.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K6I9_9PHAE3.430e-2162.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K731_9PHAE9.520e-2164.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FZI2_ECTSI1.020e-1858.82Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1033contigP-littoralis_Contig1033:77729..77992 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size265
Hectar predicted targeting categoryother localisation
Exons1
Cds size264
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789371.5541785-CDS-P-littoralis_Contig1033:77728..779921680789371.5541785-CDS-P-littoralis_Contig1033:77728..77992Pylaiella littoralis U1_48CDSP-littoralis_Contig1033 77729..77992 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1033.31.1prot_P-littoralis_Contig1033.31.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1033 77729..77992 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1033.31.1

>prot_P-littoralis_Contig1033.31.1 ID=prot_P-littoralis_Contig1033.31.1|Name=mRNA_P-littoralis_Contig1033.31.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=88bp
AKERAARGDLNRSLHGRSRANHNRNARRGQDYIASGYRARIMLPITEGER
SATMRPSSWNTPAAVLFPRYISYDRPRAAPVVEGSASQ
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mRNA from alignment at P-littoralis_Contig1033:77729..77992-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1033.31.1 ID=mRNA_P-littoralis_Contig1033.31.1|Name=mRNA_P-littoralis_Contig1033.31.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=264bp|location=Sequence derived from alignment at P-littoralis_Contig1033:77729..77992- (Pylaiella littoralis U1_48)
GCGAAGGAGAGGGCAGCACGGGGGGACCTGAATCGTAGTCTGCACGGGCG TTCCCGCGCAAACCACAATCGGAATGCGCGGAGAGGACAGGACTACATCG CGTCCGGATACCGGGCACGGATCATGCTCCCAATAACGGAAGGAGAGCGG TCTGCTACCATGCGGCCTAGCTCCTGGAACACTCCCGCAGCTGTTCTGTT CCCGCGGTACATCAGCTACGACAGACCCCGCGCGGCCCCTGTGGTAGAGG GTAGTGCATCCCAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig1033:77729..77992-

>mRNA_P-littoralis_Contig1033.31.1 ID=mRNA_P-littoralis_Contig1033.31.1|Name=mRNA_P-littoralis_Contig1033.31.1|organism=Pylaiella littoralis U1_48|type=CDS|length=264bp|location=Sequence derived from alignment at P-littoralis_Contig1033:77729..77992- (Pylaiella littoralis U1_48)
GCGAAGGAGAGGGCAGCACGGGGGGACCTGAATCGTAGTCTGCACGGGCG
TTCCCGCGCAAACCACAATCGGAATGCGCGGAGAGGACAGGACTACATCG
CGTCCGGATACCGGGCACGGATCATGCTCCCAATAACGGAAGGAGAGCGG
TCTGCTACCATGCGGCCTAGCTCCTGGAACACTCCCGCAGCTGTTCTGTT
CCCGCGGTACATCAGCTACGACAGACCCCGCGCGGCCCCTGTGGTAGAGG
GTAGTGCATCCCAG
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