mRNA_P-littoralis_Contig1033.29.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1033.29.1
Unique NamemRNA_P-littoralis_Contig1033.29.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1033.29.1 vs. uniprot
Match: A0A6H5JIR5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIR5_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 1.020e-15
Identity = 39/72 (54.17%), Postives = 49/72 (68.06%), Query Frame = 1 
Query:  235 FEDVPNAGKVNELAQNIANHIEDGLRGDTDRAVSVVLERGDALFNGRLDWLGTLWAEVKGLPPTTHLIVACW 450
            F D+ +    N+ A+ +   +  GL GDT+R V+ V +RGDALFNGRLDWLG LWA VKGL PT  LI+A W
Sbjct:   92 FGDIQDNTPANDAARGMRTLLVGGLHGDTNRVVAAVHKRGDALFNGRLDWLGELWAVVKGLQPTADLILARW 163
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1033.29.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JIR5_9PHAE1.020e-1554.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1033contigP-littoralis_Contig1033:75879..76745 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size455
Hectar predicted targeting categoryother localisation
Exons3
Cds size453
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789371.502406-CDS-P-littoralis_Contig1033:75878..760041680789371.502406-CDS-P-littoralis_Contig1033:75878..76004Pylaiella littoralis U1_48CDSP-littoralis_Contig1033 75879..76004 +
1680789371.5137763-CDS-P-littoralis_Contig1033:76207..763301680789371.5137763-CDS-P-littoralis_Contig1033:76207..76330Pylaiella littoralis U1_48CDSP-littoralis_Contig1033 76208..76330 +
1680789371.523251-CDS-P-littoralis_Contig1033:76541..767451680789371.523251-CDS-P-littoralis_Contig1033:76541..76745Pylaiella littoralis U1_48CDSP-littoralis_Contig1033 76542..76745 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1033.29.1prot_P-littoralis_Contig1033.29.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1033 75879..76745 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1033.29.1

>prot_P-littoralis_Contig1033.29.1 ID=prot_P-littoralis_Contig1033.29.1|Name=mRNA_P-littoralis_Contig1033.29.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=151bp
MSRTLDGRRPARRTRRRTRRRRRRRRTAMTQKTSARSSLCQQQGRGEESE
EDNDCMSMQDSDDEEETDEAAVQYMRGAFEDVPNAGKVNELAQNIANHIE
DGLRGDTDRAVSVVLERGDALFNGRLDWLGTLWAEVKGLPPTTHLIVACW
T
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mRNA from alignment at P-littoralis_Contig1033:75879..76745+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1033.29.1 ID=mRNA_P-littoralis_Contig1033.29.1|Name=mRNA_P-littoralis_Contig1033.29.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=867bp|location=Sequence derived from alignment at P-littoralis_Contig1033:75879..76745+ (Pylaiella littoralis U1_48)
ATGTCTCGCACACTTGATGGCAGGCGGCCAGCGAGGAGAACCAGGCGGCG
GACGAGGAGGAGGAGGAGGAGGAGGAGGACAGCGATGACGCAGAAAACCA
GCGCAAGAAGCAGCCTGTGTCAGCAAGTATGTTGAAGCCTGGGAGGTTAG
AGTCGAATGAGTACGGGTGACAAAAAAACGGCGTGTTCTTTTTTCCTTCT
TGCGTTATCTATGAACCATCGCTTTTCTCTCTTTGCTTTCTCCCACGTCC
CCCCGCAAACCTGAACTCGCCTGACGAGTGTCTTTGAGTCTCACGCTCTC
CTCGTTGCGCTTGCGAATTCTGATTGGAGCAAGGTCGAGGAGAGGAGTCT
GAAGAAGATAACGATTGCATGAGCATGCAGGATTCGGACGATGAGGAAGA
GACCGACGAGGCGGCTGTCCAATACATGCGTGGTGCTTTCGAGGATGTTC
CGGTGAGAATGGCAGTGCATATTGTTGCCTGCTCGCACATTTCAGACATC
ATGCAGCCAATGTTTCCTTTTGGTGTGACCTCGCATAGTCAGACTGGCAC
GAGTTGTTTCACTTGTGTTTCATAACCATCGCAACGAGAGCCTGTTTGGG
ATGATATTTTCAATCGCTTTTATCTTTTGTTTGTCCGCGGCCGTGTGGTT
GACGATGAAGCAGAATGCTGGCAAGGTCAACGAGCTGGCCCAGAACATTG
CGAACCATATCGAGGACGGTCTTCGCGGGGACACAGATCGTGCCGTGTCG
GTGGTGCTTGAGAGAGGGGACGCCCTCTTCAACGGGCGTCTCGACTGGCT
CGGTACACTTTGGGCGGAGGTCAAAGGTCTTCCTCCTACAACGCACTTGA
TTGTCGCGTGTTGGACG
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Coding sequence (CDS) from alignment at P-littoralis_Contig1033:75879..76745+

>mRNA_P-littoralis_Contig1033.29.1 ID=mRNA_P-littoralis_Contig1033.29.1|Name=mRNA_P-littoralis_Contig1033.29.1|organism=Pylaiella littoralis U1_48|type=CDS|length=453bp|location=Sequence derived from alignment at P-littoralis_Contig1033:75879..76745+ (Pylaiella littoralis U1_48)
ATGTCTCGCACACTTGATGGCAGGCGGCCAGCGAGGAGAACCAGGCGGCG
GACGAGGAGGAGGAGGAGGAGGAGGAGGACAGCGATGACGCAGAAAACCA
GCGCAAGAAGCAGCCTGTGTCAGCAACAAGGTCGAGGAGAGGAGTCTGAA
GAAGATAACGATTGCATGAGCATGCAGGATTCGGACGATGAGGAAGAGAC
CGACGAGGCGGCTGTCCAATACATGCGTGGTGCTTTCGAGGATGTTCCGA
ATGCTGGCAAGGTCAACGAGCTGGCCCAGAACATTGCGAACCATATCGAG
GACGGTCTTCGCGGGGACACAGATCGTGCCGTGTCGGTGGTGCTTGAGAG
AGGGGACGCCCTCTTCAACGGGCGTCTCGACTGGCTCGGTACACTTTGGG
CGGAGGTCAAAGGTCTTCCTCCTACAACGCACTTGATTGTCGCGTGTTGG
ACG
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