mRNA_P-littoralis_Contig1033.26.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1033.26.1
Unique NamemRNA_P-littoralis_Contig1033.26.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1033.26.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1033contigP-littoralis_Contig1033:72336..72866 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LRF1
PFAMsDDE_1
Model size407
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue2.5e-09
EggNOG OGs2DCSR@1|root,2S5KN@2759|Eukaryota
Cds size405
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789371.4512901-CDS-P-littoralis_Contig1033:72336..726241680789371.4512901-CDS-P-littoralis_Contig1033:72336..72624Pylaiella littoralis U1_48CDSP-littoralis_Contig1033 72337..72624 -
1680789371.4672391-CDS-P-littoralis_Contig1033:72749..728661680789371.4672391-CDS-P-littoralis_Contig1033:72749..72866Pylaiella littoralis U1_48CDSP-littoralis_Contig1033 72750..72866 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1033.26.1prot_P-littoralis_Contig1033.26.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1033 72337..72866 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1033.26.1

>prot_P-littoralis_Contig1033.26.1 ID=prot_P-littoralis_Contig1033.26.1|Name=mRNA_P-littoralis_Contig1033.26.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=135bp
VSRRPASKWEREKASQLSRSAASAHQHIITSFVKGSGGPIERTRNDGSVE
LVAGVVATPLPTTGVPTVQCPYCPKKFMCTQASAIHVGMRHPQAKKDEGE
RLLKLLLEPSASVTKMPWEGVGMGLVWVADFKTGR
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mRNA from alignment at P-littoralis_Contig1033:72336..72866-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1033.26.1 ID=mRNA_P-littoralis_Contig1033.26.1|Name=mRNA_P-littoralis_Contig1033.26.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=531bp|location=Sequence derived from alignment at P-littoralis_Contig1033:72336..72866- (Pylaiella littoralis U1_48)
GTTTCTCGTCGCCCGGCCTCGAAGTGGGAGAGGGAAAAAGCGTCACAGCT
GTCAAGATCCGCCGCTTCTGCACATCAGCACATCATTACCTCCTTCGTCA
AAGGATCCGGCGGGCCGGTGAGTTTGCAAAATAAAAGCTCGGCTGCCGCA
TGCCTACTGTACGGCGGAATTTTCCGTCTAACCGCTGCTATCCGAATGCT
GTGTCACTACTGGGTTTCTCCTTTCGATCTCGTCTGTCGCAGATTGAGCG
CACTCGGAACGATGGGTCTGTTGAGCTTGTAGCGGGTGTTGTGGCCACCC
CACTGCCCACCACTGGCGTACCGACTGTCCAGTGCCCCTACTGCCCCAAG
AAGTTCATGTGCACCCAGGCATCCGCGATCCACGTCGGAATGCGCCACCC
TCAAGCCAAGAAGGACGAGGGGGAGCGGCTTCTAAAGTTGCTGCTCGAAC
CGTCAGCATCTGTCACCAAGATGCCATGGGAGGGAGTGGGTATGGGGCTG
GTTTGGGTCGCTGATTTCAAGACGGGGCGCG
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Coding sequence (CDS) from alignment at P-littoralis_Contig1033:72336..72866-

>mRNA_P-littoralis_Contig1033.26.1 ID=mRNA_P-littoralis_Contig1033.26.1|Name=mRNA_P-littoralis_Contig1033.26.1|organism=Pylaiella littoralis U1_48|type=CDS|length=405bp|location=Sequence derived from alignment at P-littoralis_Contig1033:72336..72866- (Pylaiella littoralis U1_48)
GTTTCTCGTCGCCCGGCCTCGAAGTGGGAGAGGGAAAAAGCGTCACAGCT
GTCAAGATCCGCCGCTTCTGCACATCAGCACATCATTACCTCCTTCGTCA
AAGGATCCGGCGGGCCGATTGAGCGCACTCGGAACGATGGGTCTGTTGAG
CTTGTAGCGGGTGTTGTGGCCACCCCACTGCCCACCACTGGCGTACCGAC
TGTCCAGTGCCCCTACTGCCCCAAGAAGTTCATGTGCACCCAGGCATCCG
CGATCCACGTCGGAATGCGCCACCCTCAAGCCAAGAAGGACGAGGGGGAG
CGGCTTCTAAAGTTGCTGCTCGAACCGTCAGCATCTGTCACCAAGATGCC
ATGGGAGGGAGTGGGTATGGGGCTGGTTTGGGTCGCTGATTTCAAGACGG
GGCGC
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