mRNA_P-littoralis_Contig1033.20.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1033.20.1
Unique NamemRNA_P-littoralis_Contig1033.20.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1033.20.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1033contigP-littoralis_Contig1033:58850..59355 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size507
Hectar predicted targeting categorysignal peptide
Exons1
Cds size330
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789370.712215-CDS-P-littoralis_Contig1033:58849..591791680789370.712215-CDS-P-littoralis_Contig1033:58849..59179Pylaiella littoralis U1_48CDSP-littoralis_Contig1033 58850..59179 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789370.7249568-UTR-P-littoralis_Contig1033:59179..593551680789370.7249568-UTR-P-littoralis_Contig1033:59179..59355Pylaiella littoralis U1_48UTRP-littoralis_Contig1033 59180..59355 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1033.20.1prot_P-littoralis_Contig1033.20.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1033 58850..59179 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1033.20.1

>prot_P-littoralis_Contig1033.20.1 ID=prot_P-littoralis_Contig1033.20.1|Name=mRNA_P-littoralis_Contig1033.20.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=110bp
CCSLLPARACFCCRLLCFAVVRVCRCSFSFASPLLSNINLLHFTSRHRSI
CNAFPAGGQGEGCLSCQQVCNMLRSRPHCARCTEPKPKCWVNYQHTKLFR
VMRSHAQVA*
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mRNA from alignment at P-littoralis_Contig1033:58850..59355+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1033.20.1 ID=mRNA_P-littoralis_Contig1033.20.1|Name=mRNA_P-littoralis_Contig1033.20.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=506bp|location=Sequence derived from alignment at P-littoralis_Contig1033:58850..59355+ (Pylaiella littoralis U1_48)
TGCTGTTCCCTGCTGCCCGCACGCGCCTGTTTTTGCTGTCGTTTGCTCTG
TTTTGCTGTAGTCCGCGTCTGTCGGTGTTCGTTCTCGTTCGCTTCCCCAT
TACTTTCTAACATCAATCTGCTCCATTTTACTTCACGGCATAGATCTATT
TGTAATGCTTTTCCAGCAGGGGGGCAGGGCGAAGGGTGTCTATCCTGCCA
GCAAGTATGCAACATGCTGCGGTCTCGACCACATTGTGCACGGTGCACAG
AGCCAAAGCCTAAATGCTGGGTAAACTATCAGCACACGAAACTGTTCCGA
GTTATGCGCAGTCATGCACAGGTCGCATAGGTTGGATATGATATTTCGCT
TACCTCGCGTAGTTTGATACGTCAGAGTCAGAGATATCACTCAGTCGCGC
TCTAGTCTACGCAAGAGGGGAAGGTGTCGTGTAGGTCGATTTACATTGCC
TTGCCGCCCTGTTGGATCGATCCAACTAGAGAGTTGTCGTCTTTTTAACG
GTCACG
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Coding sequence (CDS) from alignment at P-littoralis_Contig1033:58850..59355+

>mRNA_P-littoralis_Contig1033.20.1 ID=mRNA_P-littoralis_Contig1033.20.1|Name=mRNA_P-littoralis_Contig1033.20.1|organism=Pylaiella littoralis U1_48|type=CDS|length=330bp|location=Sequence derived from alignment at P-littoralis_Contig1033:58850..59355+ (Pylaiella littoralis U1_48)
TGCTGTTCCCTGCTGCCCGCACGCGCCTGTTTTTGCTGTCGTTTGCTCTG
TTTTGCTGTAGTCCGCGTCTGTCGGTGTTCGTTCTCGTTCGCTTCCCCAT
TACTTTCTAACATCAATCTGCTCCATTTTACTTCACGGCATAGATCTATT
TGTAATGCTTTTCCAGCAGGGGGGCAGGGCGAAGGGTGTCTATCCTGCCA
GCAAGTATGCAACATGCTGCGGTCTCGACCACATTGTGCACGGTGCACAG
AGCCAAAGCCTAAATGCTGGGTAAACTATCAGCACACGAAACTGTTCCGA
GTTATGCGCAGTCATGCACAGGTCGCATAG
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