mRNA_P-littoralis_Contig1032.15.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1032.15.1
Unique NamemRNA_P-littoralis_Contig1032.15.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1032.15.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1032contigP-littoralis_Contig1032:28783..29290 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size508
Hectar predicted targeting categorymitochondrion
Exons1
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-04_000640.2
Cds size324
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789370.4808564-CDS-P-littoralis_Contig1032:28782..291061680789370.4808564-CDS-P-littoralis_Contig1032:28782..29106Pylaiella littoralis U1_48CDSP-littoralis_Contig1032 28783..29106 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789370.4909055-UTR-P-littoralis_Contig1032:29106..292901680789370.4909055-UTR-P-littoralis_Contig1032:29106..29290Pylaiella littoralis U1_48UTRP-littoralis_Contig1032 29107..29290 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1032.15.1prot_P-littoralis_Contig1032.15.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1032 28783..29106 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1032.15.1

>prot_P-littoralis_Contig1032.15.1 ID=prot_P-littoralis_Contig1032.15.1|Name=mRNA_P-littoralis_Contig1032.15.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=108bp
KGGSIKRYVFGFLSTRWFQRRPFRHPHYFRCGVIVLRKSVQKAWYLIPGT
TYGSHSCTATLPTYPTSSTATLGHMFVVNVLFSVLGPIRTTSHTGCKSCK
YRGSRSR*
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mRNA from alignment at P-littoralis_Contig1032:28783..29290+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1032.15.1 ID=mRNA_P-littoralis_Contig1032.15.1|Name=mRNA_P-littoralis_Contig1032.15.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=508bp|location=Sequence derived from alignment at P-littoralis_Contig1032:28783..29290+ (Pylaiella littoralis U1_48)
AAGGGTGGCAGCATCAAACGGTATGTGTTTGGATTTCTATCGACCAGATG
GTTCCAACGCCGCCCTTTTCGGCACCCACACTATTTCCGCTGCGGAGTAA
TTGTGCTTCGAAAATCGGTCCAGAAGGCGTGGTATCTTATACCTGGTACG
ACCTACGGTAGTCACTCTTGTACCGCTACGCTGCCGACGTACCCCACCTC
CAGCACCGCCACTCTCGGACACATGTTCGTTGTCAATGTTCTATTTTCAG
TCTTAGGTCCCATCCGCACCACTTCACACACAGGGTGCAAGTCTTGCAAA
TATAGAGGTTCACGCTCACGGTGAGGTCGACCATTTTCTTCCCGGTTCGT
CGCCCTCCCTCCGTCTTTTGCGGAACATCTGGCGTCTGGGCGGCGTAGTC
CCTCTCTGCATCCTCGACCGCGCCGTGCTTTCGCCCTTGGTGTCGCGCAA
AAACGGTTCTGATGTACATTGCTACCGTATACCACCGCTGTGAACAGAAA
AGGCCCGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig1032:28783..29290+

>mRNA_P-littoralis_Contig1032.15.1 ID=mRNA_P-littoralis_Contig1032.15.1|Name=mRNA_P-littoralis_Contig1032.15.1|organism=Pylaiella littoralis U1_48|type=CDS|length=324bp|location=Sequence derived from alignment at P-littoralis_Contig1032:28783..29290+ (Pylaiella littoralis U1_48)
AAGGGTGGCAGCATCAAACGGTATGTGTTTGGATTTCTATCGACCAGATG
GTTCCAACGCCGCCCTTTTCGGCACCCACACTATTTCCGCTGCGGAGTAA
TTGTGCTTCGAAAATCGGTCCAGAAGGCGTGGTATCTTATACCTGGTACG
ACCTACGGTAGTCACTCTTGTACCGCTACGCTGCCGACGTACCCCACCTC
CAGCACCGCCACTCTCGGACACATGTTCGTTGTCAATGTTCTATTTTCAG
TCTTAGGTCCCATCCGCACCACTTCACACACAGGGTGCAAGTCTTGCAAA
TATAGAGGTTCACGCTCACGGTGA
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