mRNA_P-littoralis_Contig1031.8.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1031.8.1
Unique NamemRNA_P-littoralis_Contig1031.8.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1031.8.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1031contigP-littoralis_Contig1031:36921..37352 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size432
Hectar predicted targeting categoryother localisation
Exons1
Cds size303
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789370.163178-UTR-P-littoralis_Contig1031:36920..369371680789370.163178-UTR-P-littoralis_Contig1031:36920..36937Pylaiella littoralis U1_48UTRP-littoralis_Contig1031 36921..36937 +
1680789370.1884675-UTR-P-littoralis_Contig1031:37240..373521680789370.1884675-UTR-P-littoralis_Contig1031:37240..37352Pylaiella littoralis U1_48UTRP-littoralis_Contig1031 37241..37352 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789370.1795483-CDS-P-littoralis_Contig1031:36937..372401680789370.1795483-CDS-P-littoralis_Contig1031:36937..37240Pylaiella littoralis U1_48CDSP-littoralis_Contig1031 36938..37240 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1031.8.1prot_P-littoralis_Contig1031.8.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1031 36938..37240 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1031.8.1

>prot_P-littoralis_Contig1031.8.1 ID=prot_P-littoralis_Contig1031.8.1|Name=mRNA_P-littoralis_Contig1031.8.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=101bp
MQDVTGDAGSTFVWSTFACHPRTTVRRKVGGVGGQRRFVGQIHIFCVIVG
LLYTTYMIRISQQHCALSRFLEELFENILIGTGILLFREESTCRVGVWYR
*
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mRNA from alignment at P-littoralis_Contig1031:36921..37352+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1031.8.1 ID=mRNA_P-littoralis_Contig1031.8.1|Name=mRNA_P-littoralis_Contig1031.8.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=432bp|location=Sequence derived from alignment at P-littoralis_Contig1031:36921..37352+ (Pylaiella littoralis U1_48)
CACATGATCTCTCGCTGATGCAAGATGTGACAGGCGATGCTGGGTCAACA
TTCGTTTGGTCTACATTTGCCTGTCATCCGAGAACCACCGTGCGACGGAA
GGTGGGGGGGGTGGGGGGCCAGAGGCGATTCGTAGGACAGATTCATATTT
TTTGTGTTATAGTCGGACTGTTGTACACGACCTACATGATACGTATTTCG
CAGCAGCATTGTGCGTTGTCACGATTTCTTGAAGAGCTTTTTGAAAACAT
ATTGATTGGTACTGGCATCCTCCTTTTCAGGGAAGAATCGACATGTAGAG
TGGGTGTATGGTATCGTTGAGTCACCAACGCGAGTATGCAAACTCAAACC
ACAACGATTGGGTGCGGGCCTGGCTTGTGCTGCAGATGGTTTCACGCTGT
TCCGGACAAAATGGGAAGATGACCCTCGCGCG
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Coding sequence (CDS) from alignment at P-littoralis_Contig1031:36921..37352+

>mRNA_P-littoralis_Contig1031.8.1 ID=mRNA_P-littoralis_Contig1031.8.1|Name=mRNA_P-littoralis_Contig1031.8.1|organism=Pylaiella littoralis U1_48|type=CDS|length=303bp|location=Sequence derived from alignment at P-littoralis_Contig1031:36921..37352+ (Pylaiella littoralis U1_48)
ATGCAAGATGTGACAGGCGATGCTGGGTCAACATTCGTTTGGTCTACATT
TGCCTGTCATCCGAGAACCACCGTGCGACGGAAGGTGGGGGGGGTGGGGG
GCCAGAGGCGATTCGTAGGACAGATTCATATTTTTTGTGTTATAGTCGGA
CTGTTGTACACGACCTACATGATACGTATTTCGCAGCAGCATTGTGCGTT
GTCACGATTTCTTGAAGAGCTTTTTGAAAACATATTGATTGGTACTGGCA
TCCTCCTTTTCAGGGAAGAATCGACATGTAGAGTGGGTGTATGGTATCGT
TGA
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