mRNA_P-littoralis_Contig1031.12.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1031.12.1
Unique NamemRNA_P-littoralis_Contig1031.12.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig1031.12.1 vs. uniprot
Match: A0A6H5KAS5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAS5_9PHAE)

HSP 1 Score: 117 bits (293), Expect = 7.080e-27
Identity = 93/218 (42.66%), Postives = 118/218 (54.13%), Query Frame = 3
Query:    6 LAQRAMRLVALNQVRDKKVYRIKLTAGVDMAEGSTRQQVWYSKGIKYLKGGKSNRHWVAEADFAKSWRPSRERVGGDSSVDDARASMDAHQDAAPSREKRPRVCQQNSQDPXXXXENR-GGAREGSGRPKGSYGPERMRTLLHKCEAFLRDGMAQSAHEATRDISAAKMLAAAVAVENNWAELTKPYLKSQANKGVGRKSAIRKLAKKRSQWENAATA 656
            LAQR   LV++ Q +  K YR++LTA V  +E     Q W S  IK  KG  + R W AE  FA +WRPS     G+    DA A      +AAP REKRPR C+  +         + GGAR GSGRPKGSYG +R+R    +   ++  G    A  A+RD+    ML A   V  +       +LK Q+N+GVGRK A+RKLAK RSQ E AA A
Sbjct:   25 LAQRGGELVSVRQEKSPKKYRVELTAHVHGSE-----QRWCSPYIKCPKGRNTGRDWAAEDRFAATWRPSFS--SGNVPHTDASA---GEAEAAPPREKRPRDCRHAAASTEDAPAAKVGGARPGSGRPKGSYGWKRVREAAQQLNDYIERGQPHCALIASRDLPG-DMLDAVKEVHQHQEVWGPAFLKRQSNRGVGRKEALRKLAKHRSQLEKAAAA 231          
BLAST of mRNA_P-littoralis_Contig1031.12.1 vs. uniprot
Match: A0A6H5JU25_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU25_9PHAE)

HSP 1 Score: 117 bits (293), Expect = 1.090e-26
Identity = 93/218 (42.66%), Postives = 118/218 (54.13%), Query Frame = 3
Query:    6 LAQRAMRLVALNQVRDKKVYRIKLTAGVDMAEGSTRQQVWYSKGIKYLKGGKSNRHWVAEADFAKSWRPSRERVGGDSSVDDARASMDAHQDAAPSREKRPRVCQQNSQDPXXXXENR-GGAREGSGRPKGSYGPERMRTLLHKCEAFLRDGMAQSAHEATRDISAAKMLAAAVAVENNWAELTKPYLKSQANKGVGRKSAIRKLAKKRSQWENAATA 656
            LAQR   LV++ Q +  K YR++LTA V  +E     Q W S  IK  KG  + R W AE  FA +WRPS     G+    DA A      +AAP REKRPR C+  +         + GGAR GSGRPKGSYG +R+R    +   ++  G    A  A+RD+    ML A   V  +       +LK Q+N+GVGRK A+RKLAK RSQ E AA A
Sbjct:   25 LAQRGGELVSVRQEKSPKKYRVELTAHVHGSE-----QRWCSPYIKCPKGRNTGRDWAAEDRFAATWRPSFS--SGNVPHTDASA---GEAEAAPPREKRPRDCRHAAASTEDAPAAKVGGARPGSGRPKGSYGWKRVREAAQQLNDYIERGQPHCALIASRDLPG-DMLDAVKEVHQHQEVWGPAFLKRQSNRGVGRKEALRKLAKHRSQLEKAAAA 231          
BLAST of mRNA_P-littoralis_Contig1031.12.1 vs. uniprot
Match: D7G0B2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0B2_ECTSI)

HSP 1 Score: 81.6 bits (200), Expect = 8.440e-16
Identity = 57/132 (43.18%), Postives = 72/132 (54.55%), Query Frame = 3
Query:  123 WYSKGIKYLKGGKSNRHWVAEADFAKSWRPSRERVGGDSSVDDARASMDAHQDAAPSREKRPRVCQQNSQDPXXXXENRGGAREGSGRPKGSYGPERMRTLLHKCEAFLRDGMAQSAHEATRDISAAKMLAA 518
            WYS+ + Y +  K  R WVAE +FAK+WRPS        S  DAR   +  + A P REKRPR CQ            R  AREG GRPKGS+G +R+R LLH+ +  +  G    A    RD+ +A MLAA
Sbjct:    8 WYSEYMGYPESNKKARDWVAEENFAKAWRPSHSSGSAVLSKADARLRSE-DKPALPPREKRPRDCQPTCSAIHTPPAKRA-AREGEGRPKGSFGRKRLRALLHQYKVQVEQGQLTFARLQLRDLGSA-MLAA 136          
BLAST of mRNA_P-littoralis_Contig1031.12.1 vs. uniprot
Match: A0A6H5JUL0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUL0_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 5.230e-13
Identity = 53/127 (41.73%), Postives = 69/127 (54.33%), Query Frame = 3
Query:  279 DAAPSREKRPRVCQQNSQDPXXXXEN-RGGAREGSGRPKGSYGPERMRTLLHKCEAFLRDGMAQSAHEATRDISAAKMLAAAVAVENNWAELTKPYLKSQANKGVGRKSAIRKLAKKRSQWENAATA 656
            +  P REKRPR CQ  ++         RGGAR G+GRPKGSYG  R+R    +   +L  G  Q A   +RD+  A ML A              +LK Q+N+G+GRK A+RKLAK +SQ +  A A
Sbjct:   25 EVTPPREKRPRDCQHAAESTGDAPPGKRGGARPGAGRPKGSYGRNRLRQAAQQLNGYLERGQLQCAQMVSRDLPGA-MLDAVKEAHQQEVVYRPAFLKRQSNRGLGRKEALRKLAKHQSQLQKEAAA 150          
BLAST of mRNA_P-littoralis_Contig1031.12.1 vs. uniprot
Match: A0A6H5JVH8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVH8_9PHAE)

HSP 1 Score: 77.4 bits (189), Expect = 5.930e-13
Identity = 49/101 (48.51%), Postives = 65/101 (64.36%), Query Frame = 3
Query:  357 RGGAREGSGRPKGSYGPERMRTLLHKCEAFLRDGMAQSAHEATRDISAAKMLAAAVAVENNWAELTKP-YLKSQANKGVGRKSAIRKLAKKRSQWENAATA 656
            RGGAR G+GRPKGSYG +R+R    +   +L  G  Q A   +RD+  A  ++ AV   +   E+ +P +LK Q+N+GVGRK A+RKLAK RSQ E AA A
Sbjct:  139 RGGARPGAGRPKGSYGRKRLRQAAQQLNYYLERGQLQCAQMVSRDLPGA--MSYAVKEAHQQEEVYRPAFLKRQSNRGVGRKEALRKLAKHRSQLEKAAVA 237          
BLAST of mRNA_P-littoralis_Contig1031.12.1 vs. uniprot
Match: D7G5I2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5I2_ECTSI)

HSP 1 Score: 66.2 bits (160), Expect = 3.700e-10
Identity = 52/125 (41.60%), Postives = 73/125 (58.40%), Query Frame = 3
Query:   57 KVYRIKLTAGVDMAEGSTRQQVWYSKGIKYLKGGKSNRHWVAEADFAKSWRPSRERVGGD--SSVDDARASMDAHQDA--APSREKRPRVCQQNSQDPXXXXENRGGAREGSGRPKGSYGPERMR 419
            K YRI L A  D+ EG  ++  W S  IK  KG K+ R   AE  F + WRPS    GG+    + D+R  ++A  +A  A +R KRPR C  ++ +     E RGG REG+GRP+GS+GP+++R
Sbjct:   36 KSYRIHLVA--DLREGVRKE--WRSTPIKRPKGRKTGRDRGAEHKFFEDWRPSE---GGNVVERLRDSRHRIEAEAEAEVAAARTKRPRDCHASAAE-HARPEKRGGKREGAGRPRGSFGPKKLR 152          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1031.12.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5KAS5_9PHAE7.080e-2742.66Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JU25_9PHAE1.090e-2642.66Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
D7G0B2_ECTSI8.440e-1643.18Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JUL0_9PHAE5.230e-1341.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JVH8_9PHAE5.930e-1348.51Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G5I2_ECTSI3.700e-1041.60Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1031contigP-littoralis_Contig1031:77743..78401 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size660
Hectar predicted targeting categorymitochondrion
Exons1
Cds size657
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789370.3100922-CDS-P-littoralis_Contig1031:77742..783991680789370.3100922-CDS-P-littoralis_Contig1031:77742..78399Pylaiella littoralis U1_48CDSP-littoralis_Contig1031 77743..78399 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789370.321597-UTR-P-littoralis_Contig1031:78399..784011680789370.321597-UTR-P-littoralis_Contig1031:78399..78401Pylaiella littoralis U1_48UTRP-littoralis_Contig1031 78400..78401 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1031.12.1prot_P-littoralis_Contig1031.12.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1031 77743..78399 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1031.12.1

>prot_P-littoralis_Contig1031.12.1 ID=prot_P-littoralis_Contig1031.12.1|Name=mRNA_P-littoralis_Contig1031.12.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=219bp
MLAQRAMRLVALNQVRDKKVYRIKLTAGVDMAEGSTRQQVWYSKGIKYLK
GGKSNRHWVAEADFAKSWRPSRERVGGDSSVDDARASMDAHQDAAPSREK
RPRVCQQNSQDPPPPPENRGGAREGSGRPKGSYGPERMRTLLHKCEAFLR
DGMAQSAHEATRDISAAKMLAAAVAVENNWAELTKPYLKSQANKGVGRKS
AIRKLAKKRSQWENAATAA
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mRNA from alignment at P-littoralis_Contig1031:77743..78401-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1031.12.1 ID=mRNA_P-littoralis_Contig1031.12.1|Name=mRNA_P-littoralis_Contig1031.12.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=659bp|location=Sequence derived from alignment at P-littoralis_Contig1031:77743..78401- (Pylaiella littoralis U1_48)
CAATGTTAGCCCAACGAGCAATGCGTCTTGTCGCCCTGAACCAAGTCAGG GACAAAAAGGTGTATCGTATCAAGCTTACAGCAGGAGTCGATATGGCTGA AGGGTCAACCAGGCAGCAAGTATGGTACAGTAAGGGCATCAAGTACCTCA AGGGCGGCAAATCTAATCGCCACTGGGTGGCCGAGGCGGACTTCGCGAAA AGCTGGCGGCCAAGCCGCGAGCGTGTGGGTGGTGACAGCAGCGTGGATGA TGCTCGTGCCAGCATGGATGCACACCAAGATGCCGCTCCTTCCCGAGAAA AGCGGCCACGGGTCTGTCAACAAAATTCTCAGGATCCACCGCCACCTCCT GAGAACCGCGGTGGAGCACGCGAAGGCAGCGGTAGGCCGAAGGGGAGCTA CGGCCCTGAGAGGATGCGGACGCTCCTGCACAAGTGTGAAGCGTTCCTTC GAGACGGCATGGCTCAATCTGCGCACGAAGCGACGCGGGATATTTCTGCT GCCAAGATGCTTGCTGCGGCGGTTGCGGTGGAAAACAATTGGGCGGAGTT GACTAAACCGTACCTCAAAAGTCAAGCCAACAAGGGCGTGGGCAGGAAGA GCGCTATTAGGAAGCTGGCGAAGAAGAGGTCACAGTGGGAGAACGCGGCA ACAGCAGCC
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Coding sequence (CDS) from alignment at P-littoralis_Contig1031:77743..78401-

>mRNA_P-littoralis_Contig1031.12.1 ID=mRNA_P-littoralis_Contig1031.12.1|Name=mRNA_P-littoralis_Contig1031.12.1|organism=Pylaiella littoralis U1_48|type=CDS|length=657bp|location=Sequence derived from alignment at P-littoralis_Contig1031:77743..78401- (Pylaiella littoralis U1_48)
ATGTTAGCCCAACGAGCAATGCGTCTTGTCGCCCTGAACCAAGTCAGGGA
CAAAAAGGTGTATCGTATCAAGCTTACAGCAGGAGTCGATATGGCTGAAG
GGTCAACCAGGCAGCAAGTATGGTACAGTAAGGGCATCAAGTACCTCAAG
GGCGGCAAATCTAATCGCCACTGGGTGGCCGAGGCGGACTTCGCGAAAAG
CTGGCGGCCAAGCCGCGAGCGTGTGGGTGGTGACAGCAGCGTGGATGATG
CTCGTGCCAGCATGGATGCACACCAAGATGCCGCTCCTTCCCGAGAAAAG
CGGCCACGGGTCTGTCAACAAAATTCTCAGGATCCACCGCCACCTCCTGA
GAACCGCGGTGGAGCACGCGAAGGCAGCGGTAGGCCGAAGGGGAGCTACG
GCCCTGAGAGGATGCGGACGCTCCTGCACAAGTGTGAAGCGTTCCTTCGA
GACGGCATGGCTCAATCTGCGCACGAAGCGACGCGGGATATTTCTGCTGC
CAAGATGCTTGCTGCGGCGGTTGCGGTGGAAAACAATTGGGCGGAGTTGA
CTAAACCGTACCTCAAAAGTCAAGCCAACAAGGGCGTGGGCAGGAAGAGC
GCTATTAGGAAGCTGGCGAAGAAGAGGTCACAGTGGGAGAACGCGGCAAC
AGCAGCC
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