mRNA_P-littoralis_Contig1030.35.3 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1030.35.3
Unique NamemRNA_P-littoralis_Contig1030.35.3
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1030.35.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1030contigP-littoralis_Contig1030:80052..80609 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size254
Hectar predicted targeting categoryother localisation
Exons3
Cds size252
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789369.8621662-CDS-P-littoralis_Contig1030:80053..801231680789369.8621662-CDS-P-littoralis_Contig1030:80053..80123Pylaiella littoralis U1_48CDSP-littoralis_Contig1030 80054..80123 -
1680789369.8718884-CDS-P-littoralis_Contig1030:80414..805421680789369.8718884-CDS-P-littoralis_Contig1030:80414..80542Pylaiella littoralis U1_48CDSP-littoralis_Contig1030 80415..80542 -
1680789369.8853123-CDS-P-littoralis_Contig1030:80555..806091680789369.8853123-CDS-P-littoralis_Contig1030:80555..80609Pylaiella littoralis U1_48CDSP-littoralis_Contig1030 80556..80609 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1030.35.3prot_P-littoralis_Contig1030.35.3Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1030 80054..80609 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1030.35.3

>prot_P-littoralis_Contig1030.35.3 ID=prot_P-littoralis_Contig1030.35.3|Name=mRNA_P-littoralis_Contig1030.35.3|organism=Pylaiella littoralis U1_48|type=polypeptide|length=84bp
CGRRLVGQRRRLGAAVLFEEEEEEEEEEEGIPDLTTTGPCSAWGLGVVTL
TAQCADEREDGCDSPATHQWNGHVSAVLYSLTSF
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mRNA from alignment at P-littoralis_Contig1030:80052..80609-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1030.35.3 ID=mRNA_P-littoralis_Contig1030.35.3|Name=mRNA_P-littoralis_Contig1030.35.3|organism=Pylaiella littoralis U1_48|type=mRNA|length=558bp|location=Sequence derived from alignment at P-littoralis_Contig1030:80052..80609- (Pylaiella littoralis U1_48)
TGTGGACGACGACTCGTCGGGCAGCGACGACGACTCGGAGCCGCAGTACT
TTTCGTACGAAGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAA
GGGATTCCGGATCTGACGACTACGGGCCCATGTTCGGCATGGGGGCTGGG
AGTGGTGACTCTGACGGCACAGTGTGCGGATGAACGAGAGGATGGGTGAG
ATGATGACTGTGTGCTACTGTGGATAGTCCTCGAGAGATCCGTAATTGAA
CTTGCGAGGGGAATTGGCAAGGAGGTCGGGCAATGTTTTCATTTATTTGT
TGCACACCCGCGCAAGATGTAGTTAATATGCTCTCGTAGGACTTCGCGCG
TTTCCCACCATGGCCAGACGAAACAGCAGGCGGAATTTCCTCATCAGCAT
TGGCGTGTTGACGTCTGCACCCGTTTTACCTCACGCGGCCCCAACTCCAT
CTGCTGCCCGTTCGTTCATTTTTGCGTTTCCATCAGGTGCGACTCACCGG
CAACTCATCAGTGGAACGGGCACGTATCTGCTGTGCTGTACAGTCTGACG
AGTTTTTT
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Coding sequence (CDS) from alignment at P-littoralis_Contig1030:80052..80609-

>mRNA_P-littoralis_Contig1030.35.3 ID=mRNA_P-littoralis_Contig1030.35.3|Name=mRNA_P-littoralis_Contig1030.35.3|organism=Pylaiella littoralis U1_48|type=CDS|length=252bp|location=Sequence derived from alignment at P-littoralis_Contig1030:80052..80609- (Pylaiella littoralis U1_48)
TGTGGACGACGACTCGTCGGGCAGCGACGACGACTCGGAGCCGCAGTACT
TTTCGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGGGATTCCGGATC
TGACGACTACGGGCCCATGTTCGGCATGGGGGCTGGGAGTGGTGACTCTG
ACGGCACAGTGTGCGGATGAACGAGAGGATGGGTGCGACTCACCGGCAAC
TCATCAGTGGAACGGGCACGTATCTGCTGTGCTGTACAGTCTGACGAGTT
TT
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