mRNA_P-littoralis_Contig1030.14.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1030.14.1
Unique NamemRNA_P-littoralis_Contig1030.14.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1030.14.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1030contigP-littoralis_Contig1030:47394..48978 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size403
Hectar predicted targeting categoryother localisation
Exons2
Cds size381
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789369.7949438-UTR-P-littoralis_Contig1030:47393..474141680789369.7949438-UTR-P-littoralis_Contig1030:47393..47414Pylaiella littoralis U1_48UTRP-littoralis_Contig1030 47394..47414 -
1680789369.8233294-UTR-P-littoralis_Contig1030:48977..489781680789369.8233294-UTR-P-littoralis_Contig1030:48977..48978Pylaiella littoralis U1_48UTRP-littoralis_Contig1030 48978..48978 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789369.8043835-CDS-P-littoralis_Contig1030:47414..477141680789369.8043835-CDS-P-littoralis_Contig1030:47414..47714Pylaiella littoralis U1_48CDSP-littoralis_Contig1030 47415..47714 -
1680789369.8132834-CDS-P-littoralis_Contig1030:48896..489771680789369.8132834-CDS-P-littoralis_Contig1030:48896..48977Pylaiella littoralis U1_48CDSP-littoralis_Contig1030 48897..48977 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1030.14.1prot_P-littoralis_Contig1030.14.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1030 47415..48977 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1030.14.1

>prot_P-littoralis_Contig1030.14.1 ID=prot_P-littoralis_Contig1030.14.1|Name=mRNA_P-littoralis_Contig1030.14.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=127bp
MLLKHDRKGTEPPAWLLKLLMPVTDDQLRSSVETHSTKIASLVSAVKSLQ
EQRTQPPSRGRSRDGSKKREHTKHQGSGRTKILKKDFAPCTYPGCYRPHT
HPVEDCGHRRNDEKHGFVRTAVTKQG*
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mRNA from alignment at P-littoralis_Contig1030:47394..48978-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1030.14.1 ID=mRNA_P-littoralis_Contig1030.14.1|Name=mRNA_P-littoralis_Contig1030.14.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1585bp|location=Sequence derived from alignment at P-littoralis_Contig1030:47394..48978- (Pylaiella littoralis U1_48)
CATGCTACTAAAGCATGATCGGAAAGGGACGGAACCACCAGCCTGGCTCT
TGAAGCTACTCATGCCCGTGACAGACGACCAGGTGAACACAGTTGACCGT
ATGCCTCGCGTCGAGTGCGGTAGCATTAGCCCACGTGTTGCCAGTAACAG
CGCTGACCCTGCAGCACCACAACAACCCCGCAATGTACCTCTGTTATCAC
ACGTACCTTCCACGAACGACACTCTACCATCTTGCAATAACAGATCATCT
ACCGTACAACCTAGAGATCTTGAGAGCGAGACCCCCCCATTTTGTCACAA
CAACAACGACAGCAGATCATCTGCCGTACAATCCAGAGACCTTGGGGTAG
AATTTGTCCGAGTCAGGCCAGCCACCGTCGCTGCCACAGGAACGGACACT
CCGGTAGGTGCAAACGCTACACAAGGACTTAGCAACCCTGCTAGCGCACG
CACCATGCGGGAGTCGGCTGCTCCTGTCATGACTCCAACAACCCCGCAAT
TTTTCTCTCACACACAAGTCGGACCCCAACCGTCTGCTCACCAAGCAGGA
ACCAACAGCCGATTTGTTTTGAAACCAACAGATTTGCCGAAGGACCTCGT
TTTTTCCGGCGAACAAACTCAGGACGTCGTTGAGCTTCTTACTCTTTTTC
GCGCTCGGGTAAAACTCAACTCAGTTGACGGTTGCCCAGATGACGTAGTT
GACCAACGTGCCATCAAGTACTTGCCACTCCTCGTGCGAGGGGCTGCCAA
TGACAGTCTTTTGCAGTTGGCCGCAGGTACTCTTGAGTGGAGAACAGAGA
GTGTAATCTCGAATCTTCGGACTTCGGGACAAAGCACTCGACCAATCTCC
CCAACTACTTGGACAGAGTGGTGCCAAGCATTCAGCTTCCTTTTTTCCGC
GCCAAATCGCATTTCTATTTTAGCGCGTGAAATTACGACGATCAAACAAA
CAGAATCACAATCAGTGGACATGTATGCCCTGAAAGTCACGCAAGCGTGC
ACCCGTCTGATCGCCGAAGCCACCCGCTCTGCCCCACCCACTACTAGCCC
CCACGAACACGCATGGGATGTTTTTCTCACAGCTACGTTCGAAAATGGTC
TCCTTCCCGGGATCAGGCTTGAGTGTATCCGAGAAAACCCTGTTCTCAGT
TTCCAGGAGGCTCGCGTTCGCGCGAAAAAACATGAATCAAACAACTTACG
AGGCACACCCCTTACACCCCAAAGCCCAACTACCTATGCTTCGGCCGTGT
CGCACAACCCACAGCTGCGCTCATCAGTGGAGACCCACTCCACCAAAATT
GCGAGTCTGGTCTCCGCGGTCAAGAGTCTCCAAGAACAACGAACCCAACC
TCCATCTCGGGGCCGCAGCCGCGACGGGAGTAAGAAGCGGGAGCACACCA
AACACCAGGGGTCTGGCAGGACCAAAATCCTAAAGAAAGATTTTGCTCCA
TGCACATACCCCGGGTGCTACCGTCCGCACACTCACCCCGTTGAGGACTG
CGGTCACCGCAGGAACGACGAGAAGCACGGGTTCGTCCGCACCGCCGTCA
CGAAGCAGGGATGACGGGGCCCGAATTGGGTCCCC
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Coding sequence (CDS) from alignment at P-littoralis_Contig1030:47394..48978-

>mRNA_P-littoralis_Contig1030.14.1 ID=mRNA_P-littoralis_Contig1030.14.1|Name=mRNA_P-littoralis_Contig1030.14.1|organism=Pylaiella littoralis U1_48|type=CDS|length=381bp|location=Sequence derived from alignment at P-littoralis_Contig1030:47394..48978- (Pylaiella littoralis U1_48)
ATGCTACTAAAGCATGATCGGAAAGGGACGGAACCACCAGCCTGGCTCTT
GAAGCTACTCATGCCCGTGACAGACGACCAGCTGCGCTCATCAGTGGAGA
CCCACTCCACCAAAATTGCGAGTCTGGTCTCCGCGGTCAAGAGTCTCCAA
GAACAACGAACCCAACCTCCATCTCGGGGCCGCAGCCGCGACGGGAGTAA
GAAGCGGGAGCACACCAAACACCAGGGGTCTGGCAGGACCAAAATCCTAA
AGAAAGATTTTGCTCCATGCACATACCCCGGGTGCTACCGTCCGCACACT
CACCCCGTTGAGGACTGCGGTCACCGCAGGAACGACGAGAAGCACGGGTT
CGTCCGCACCGCCGTCACGAAGCAGGGATGA
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