mRNA_P-littoralis_Contig103.62.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig103.62.1
Unique NamemRNA_P-littoralis_Contig103.62.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig103.62.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig103contigP-littoralis_Contig103:340897..341552 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size656
Hectar predicted targeting categorysignal peptide
Exons1
Cds size378
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789366.8491716-UTR-P-littoralis_Contig103:340896..3408981680789366.8491716-UTR-P-littoralis_Contig103:340896..340898Pylaiella littoralis U1_48UTRP-littoralis_Contig103 340897..340898 -
1680789366.8672159-UTR-P-littoralis_Contig103:341276..3415521680789366.8672159-UTR-P-littoralis_Contig103:341276..341552Pylaiella littoralis U1_48UTRP-littoralis_Contig103 341277..341552 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789366.858383-CDS-P-littoralis_Contig103:340898..3412761680789366.858383-CDS-P-littoralis_Contig103:340898..341276Pylaiella littoralis U1_48CDSP-littoralis_Contig103 340899..341276 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig103.62.1prot_P-littoralis_Contig103.62.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig103 340899..341276 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig103.62.1

>prot_P-littoralis_Contig103.62.1 ID=prot_P-littoralis_Contig103.62.1|Name=mRNA_P-littoralis_Contig103.62.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=126bp
MCGGWVRLALTRTSTFVVLAGVCVCLASILVWLGRVAYLLRAQMAILLSV
CLLRCLSVCLPVCLSVCPYVCLSDFVPVRAHILQLPGKTHDFFRTACACF
MLWISMRIRSPSRFFVSHRAPTICL*
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mRNA from alignment at P-littoralis_Contig103:340897..341552-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig103.62.1 ID=mRNA_P-littoralis_Contig103.62.1|Name=mRNA_P-littoralis_Contig103.62.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=656bp|location=Sequence derived from alignment at P-littoralis_Contig103:340897..341552- (Pylaiella littoralis U1_48)
GGGGAGCGACCGCATCGGCCGCACTCCGTACGATACCGAACCCCTCAGAC
CAGCAGCAGCGGCGGCAAAAGCAAAAAGAAGTGGGCATAGAAGGCGACTT
TAATACATATTTCGTGCTATTATGGAATTACAAAAAAAAAACTCACCGCG
CGGGTGCTATGTAGGCCGACCTATACGGGAGGCATTCTCGTTTTGCCAGA
GGCACTGATCATACCCACCTGTAAATGTGGGGGGAGGGGTGGTGACGACC
AATCCAGCGCGTTCGTTTAGTTGGGGATGTGTGGAGGGTGGGTTCGTTTA
GCTCTCACACGCACAAGTACGTTTGTTGTTCTGGCGGGGGTGTGTGTATG
CCTTGCAAGCATCTTGGTGTGGCTAGGCAGGGTGGCATATTTATTGAGGG
CGCAGATGGCGATCTTACTATCGGTCTGTCTGTTGAGATGCCTGTCTGTC
TGCCTGCCTGTCTGTCTGTCTGTCTGTCCGTATGTCTGCCTGTCTGACTT
CGTGCCTGTGCGTGCTCATATATTGCAGCTTCCAGGGAAAACCCACGACT
TTTTTCGCACTGCATGCGCTTGTTTTATGCTCTGGATATCAATGAGAATC
AGATCCCCTTCCCGGTTTTTCGTTTCACATCGAGCGCCCACGATTTGTCT
GTGAGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig103:340897..341552-

>mRNA_P-littoralis_Contig103.62.1 ID=mRNA_P-littoralis_Contig103.62.1|Name=mRNA_P-littoralis_Contig103.62.1|organism=Pylaiella littoralis U1_48|type=CDS|length=378bp|location=Sequence derived from alignment at P-littoralis_Contig103:340897..341552- (Pylaiella littoralis U1_48)
ATGTGTGGAGGGTGGGTTCGTTTAGCTCTCACACGCACAAGTACGTTTGT
TGTTCTGGCGGGGGTGTGTGTATGCCTTGCAAGCATCTTGGTGTGGCTAG
GCAGGGTGGCATATTTATTGAGGGCGCAGATGGCGATCTTACTATCGGTC
TGTCTGTTGAGATGCCTGTCTGTCTGCCTGCCTGTCTGTCTGTCTGTCTG
TCCGTATGTCTGCCTGTCTGACTTCGTGCCTGTGCGTGCTCATATATTGC
AGCTTCCAGGGAAAACCCACGACTTTTTTCGCACTGCATGCGCTTGTTTT
ATGCTCTGGATATCAATGAGAATCAGATCCCCTTCCCGGTTTTTCGTTTC
ACATCGAGCGCCCACGATTTGTCTGTGA
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