mRNA_P-littoralis_Contig103.50.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig103.50.1
Unique NamemRNA_P-littoralis_Contig103.50.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig103.50.1 vs. uniprot
Match: A0A6H5J724_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J724_9PHAE)

HSP 1 Score: 164 bits (415), Expect = 3.800e-38
Identity = 90/158 (56.96%), Postives = 109/158 (68.99%), Query Frame = 1 
Query: 1261 KPCCLYLQVVGPAPSEKKVPPARRVELVRRGAKPVDLSITLGKPGMYTVYLTASRDWNGSGVGEDPAEQPIKIESFTLPDSLFAENHKPICHQCKKPLVGR--RALCKDALGSGPRCLRLVPPSGLSFLADLTVQAFVPPKLPRGRTCLKCRACVNTA 1728
            KPC LYLQV+GPAP++ KVPPA+ V L  R AKPVDL  TL KPG YT+Y+TAS  WNG GV EDP+EQPI+I+ F +PD+LF    +  C  C + L  R  R + KD LG GP  LRL+P SGLSFLADLTV   +P  L RG+   KC AC+ T+
Sbjct:  728 KPCHLYLQVIGPAPTQDKVPPAKMVTLGNRDAKPVDLLTTLSKPGRYTLYVTASNRWNGGGVCEDPSEQPIEIKHFCIPDNLFPAG-EACCIGCGEVLPYRPHRRVIKDPLGPGPLELRLIPRSGLSFLADLTVHVSIP--LLRGKGS-KCSACMTTS 881
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BLAST of mRNA_P-littoralis_Contig103.50.1 vs. uniprot
Match: D7FSN2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSN2_ECTSI)

HSP 1 Score: 157 bits (397), Expect = 4.090e-36
Identity = 88/157 (56.05%), Postives = 105/157 (66.88%), Query Frame = 1 
Query: 1261 KPCCLYLQVVGPAPSEKKVPPARRVELVRRGAKPVDLSITLGKPGMYTVYLTASRDWNGSGVGEDPAEQPIKIESFTLPDSLFAENHKPICHQCKKPLVGR--RALCKDALGSGPRCLRLVPPSGLSFLADLTVQAFVPPKLPRGRTCLKCRACVNT 1725
            KPC LYLQV+GPAP++ KVPP + V L  R AKPVDL  TL KPG YT+Y+TAS  WNG GV +DP+EQPI+I+ F +PD+LF       C  C + L  R  R + KD LG GP  LRL+P SGLSFLADLTV   +P  L RG+   KC AC  T
Sbjct:  247 KPCHLYLQVIGPAPTQDKVPPGKMVTLGDRDAKPVDLLTTLSKPGRYTLYVTASNRWNGGGVCKDPSEQPIEIKHFFIPDNLFPAGEAR-CIGCGEVLPYRPHRRVIKDPLGPGPLELRLIPRSGLSFLADLTVHVSIP--LLRGKGS-KCSACNTT 399
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig103.50.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5J724_9PHAE3.800e-3856.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FSN2_ECTSI4.090e-3656.05Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig103contigP-littoralis_Contig103:322229..325405 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size2151
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-07_002500.1
Cds size2148
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789368.3807757-CDS-P-littoralis_Contig103:322230..3228391680789368.3807757-CDS-P-littoralis_Contig103:322230..322839Pylaiella littoralis U1_48CDSP-littoralis_Contig103 322231..322839 -
1680789368.39409-CDS-P-littoralis_Contig103:323522..3237471680789368.39409-CDS-P-littoralis_Contig103:323522..323747Pylaiella littoralis U1_48CDSP-littoralis_Contig103 323523..323747 -
1680789368.4050336-CDS-P-littoralis_Contig103:324091..3254051680789368.4050336-CDS-P-littoralis_Contig103:324091..325405Pylaiella littoralis U1_48CDSP-littoralis_Contig103 324092..325405 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig103.50.1prot_P-littoralis_Contig103.50.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig103 322231..325405 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig103.50.1

>prot_P-littoralis_Contig103.50.1 ID=prot_P-littoralis_Contig103.50.1|Name=mRNA_P-littoralis_Contig103.50.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=716bp
NGATGDASNSVGDGVEPMAEETAGAAARGANVCSSSSSSRSSSVVDEEPS
TSYVPSPSAEAPELRLPDDRQEDGAGVGICGSPIPATIAAAAEAPSYARA
LGEYNSPTHATVAAAAKFFSPLAHGARNCGSPMSPTVAAAAEALSSACAA
ASAASAASAAAAEKTTESLAGEARNEEYGTSAANAETLITHNCMRAPVGE
AKTSRVCAGGTAHPRQGAATAGEERDDAATTAPTSDESITSPVGSSPAAA
ASNADVSPAASASRGLQRPTVENQAVLPAGAGGAGGSHPSPKDGNITQSA
EAGSNASRPAGSSVEGAGIKGTATTATVPEAPPTAQVTSGSTSAATPPVV
GPTASSSGVPVSTTSGSGSSASASASASASASASASAAPVAPSTTIQAVK
KSAATSHSSSKARAPSAKRFKPCCLYLQVVGPAPSEKKVPPARRVELVRR
GAKPVDLSITLGKPGMYTVYLTASRDWNGSGVGEDPAEQPIKIESFTLPD
SLFAENHKPICHQCKKPLVGRRALCKDALGSGPRCLRLVPPSGLSFLADL
TVQAFVPPKLPRGRTCLKCRACVNTATTGGAPATPNPPTSATTKSGESLE
TLQSDGAVAVRVGTLKPAAGSGSNAVVAAAADPSATAVLDGGGRVVPVAP
VVRVVPPTPSVPQLMDAADFLAAAADADARTAVAEAATAAAAARPPDAAT
EPKSWSIHDALGLELP
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mRNA from alignment at P-littoralis_Contig103:322229..325405-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig103.50.1 ID=mRNA_P-littoralis_Contig103.50.1|Name=mRNA_P-littoralis_Contig103.50.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3177bp|location=Sequence derived from alignment at P-littoralis_Contig103:322229..325405- (Pylaiella littoralis U1_48)
AACGGGGCAACGGGCGATGCGTCGAACAGCGTGGGTGACGGTGTTGAACC
CATGGCGGAGGAGACGGCGGGGGCAGCAGCAAGGGGTGCGAATGTTTGCA
GCAGCAGCAGCAGCAGCAGAAGTAGCAGCGTGGTCGACGAGGAGCCGTCT
ACGTCGTACGTACCGTCTCCCAGCGCGGAAGCGCCCGAGCTTCGCTTACC
GGATGATAGACAAGAGGATGGTGCCGGTGTGGGGATCTGCGGGTCGCCCA
TCCCTGCAACGATTGCCGCTGCTGCCGAGGCTCCTTCTTATGCTCGTGCT
TTGGGGGAATATAACTCGCCCACGCATGCTACGGTTGCCGCTGCTGCCAA
GTTTTTTTCTCCTCTTGCTCACGGTGCGAGGAACTGTGGTTCGCCGATGT
CTCCCACGGTTGCCGCTGCTGCTGAGGCTCTTTCTTCTGCTTGTGCCGCT
GCCTCCGCTGCCAGTGCTGCTAGTGCTGCCGCAGCGGAAAAAACTACTGA
ATCTCTCGCTGGCGAGGCAAGAAACGAGGAGTATGGAACGAGCGCTGCCA
ACGCCGAAACGCTCATCACGCACAATTGTATGCGTGCCCCCGTCGGCGAA
GCTAAAACGTCTAGGGTATGCGCAGGGGGCACGGCACATCCCAGGCAAGG
AGCGGCCACCGCGGGCGAAGAGAGGGACGATGCAGCCACCACAGCTCCAA
CCTCCGACGAGAGCATTACGAGCCCTGTCGGTTCGTCACCGGCAGCAGCC
GCCAGCAACGCCGACGTTTCTCCCGCCGCGTCCGCGTCGCGTGGGTTGCA
ACGACCTACCGTTGAGAATCAGGCCGTCCTCCCTGCCGGCGCGGGGGGGG
CTGGTGGTTCTCATCCTTCTCCGAAAGACGGAAATATTACGCAGTCAGCG
GAAGCTGGCAGCAACGCGAGCAGACCAGCCGGGTCTAGCGTCGAGGGTGC
TGGAATTAAGGGGACCGCGACGACGGCAACGGTACCGGAAGCGCCACCAA
CAGCTCAGGTAACGTCGGGATCAACCTCTGCGGCCACACCGCCAGTCGTG
GGTCCTACCGCGAGCAGTTCAGGAGTACCGGTCTCCACGACCTCGGGTTC
AGGCTCTTCGGCTTCGGCTTCGGCTTCGGCTTCGGCTTCGGCTTCGGCTT
CGGCTTCGGCTGCACCGGTGGCTCCGTCGACGACGATTCAGGCGGTGAAA
AAGTCAGCAGCAACATCGCATAGCAGCTCAAAGGCGAGGGCGCCTTCTGC
CAAGCGGTTTAAGCCCTGCTGCTTGTATCTACAGGTCGTTGGGCCTGCCC
CATCTGAGAAAAAGGTGAGGTCCCCTCTCTGGCGTTTCTTGTGTGCCTGT
TGTTTTTTTATCCTTCCGGACTTTTATGGCAACCCCCCCCCCTCCCCCCC
CGCCCCCGCCTCTCTCGCTCCCTTCGCCCCCCCTACCAGACCACCGACCT
TGTGTAAAAAATCAAGCTCTATCGTTTTCGTTTTTTTTCTTTGAAGTGGA
TACTCGCTGCATGGATAGTGTATCGGCATTGATTGATGTTAATTCGATGA
TAAGCCTTGGCCTTGGTGGCCTCACGCTGTCCGTGTTTGTCGTTCTCAAT
ATTCTGTGCCTGTGTCTCCCTCCCCCCTCCCCCCGCCTCCCTGGTGAATA
TGTTGCAGGTGCCGCCAGCAAGGAGAGTGGAGCTCGTGAGGCGAGGCGCG
AAGCCGGTGGACCTGTCGATTACTCTGGGGAAGCCGGGGATGTACACGGT
GTACCTGACGGCCTCTCGGGATTGGAACGGCAGCGGGGTGGGCGAGGACC
CAGCGGAGCAGCCGATCAAGATCGAAAGCTTCACCCTTCCGGACAGCCTG
TTCGCCGAAAATCACAAACCTATCTGCCATCAGGTATGTATGATAGATTC
TTCCGAGTCACGGTCACCGTACATACACAAGAGGGCACGATATTTCCAAG
CCGTGAGTACAGACCTTCTTGTTCTTGTTCTTGTTCTTGCTGCTGCTGCT
GCTGCTACTGTTGCTGCGGTCGTTGTTGTCGTTGTTGTTGTATAACTAGA
ACGCGAGGTCTGGTCACTTTGCGACGAGCGTGTTGTTGTGAAGGGACAAC
GGGTTTTTTTTTGTGATTGCGTTTGTTGCCGGGCGGGAGGGACGGCGAGA
AGCACGGTACGCACCAGCCGAGCCGAGCCGGCCATGACACGATATGATAT
ATTCTTGATGGAACTGCGATTAGCTATTTGAGCTGACGGAAATTCCTGAC
GGCAGGGTGTAACAGCTTTTTTTTTATTCTGATTTTTCGTACGTACGTGC
CCCCGGAAGGTGTTCTAAATAGTTGTCTGTGGCATTCGTACGAGTATGAT
GCAGTTGAGTCACTGCCCTTCAGGCGGGTCCTTCTTTCCCTCCCCGCCCC
CGAGGCGGTTTCGTTTGTACGTACGTAAGAGTAGTGTACATCCTTCGCTT
TGACCATTTATGCGCCATCCCCCCCTTACCCCCCCCACCGTCGCTGGTGT
ACGATATCGTGTTTCTTCCCACGCGCATCTGCGGTTCGTTGCGTTGTGCC
GGTTGTTTCCTTTTAGTGCAAAAAGCCTCTCGTCGGCAGACGAGCGCTCT
GCAAGGACGCCCTCGGCTCGGGTCCTCGTTGCCTGCGTTTGGTGCCCCCC
TCGGGCCTAAGCTTCCTCGCCGACCTGACTGTCCAGGCGTTTGTGCCGCC
CAAGCTACCCAGGGGGCGCACTTGCCTGAAGTGCCGTGCTTGCGTCAACA
CTGCCACCACCGGGGGAGCGCCTGCTACTCCTAACCCCCCCACTTCCGCC
ACGACCAAAAGCGGTGAGTCGCTCGAAACGTTACAGAGTGACGGCGCTGT
TGCTGTGAGGGTTGGGACACTGAAACCGGCCGCCGGCAGTGGGAGCAACG
CGGTAGTGGCTGCGGCGGCGGACCCTTCTGCTACTGCGGTTCTTGATGGC
GGAGGGCGGGTCGTCCCTGTCGCCCCTGTCGTCCGCGTCGTACCACCGAC
GCCTTCTGTGCCGCAGCTGATGGATGCCGCGGATTTTCTTGCTGCTGCTG
CTGATGCTGATGCAAGAACAGCTGTTGCTGAGGCCGCTACCGCCGCCGCC
GCCGCCCGCCCCCCCGACGCCGCCACTGAACCAAAGTCATGGTCGATCCA
CGACGCTCTGGGGCTGGAGCTCCCCTC
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Coding sequence (CDS) from alignment at P-littoralis_Contig103:322229..325405-

>mRNA_P-littoralis_Contig103.50.1 ID=mRNA_P-littoralis_Contig103.50.1|Name=mRNA_P-littoralis_Contig103.50.1|organism=Pylaiella littoralis U1_48|type=CDS|length=2148bp|location=Sequence derived from alignment at P-littoralis_Contig103:322229..325405- (Pylaiella littoralis U1_48)
AACGGGGCAACGGGCGATGCGTCGAACAGCGTGGGTGACGGTGTTGAACC
CATGGCGGAGGAGACGGCGGGGGCAGCAGCAAGGGGTGCGAATGTTTGCA
GCAGCAGCAGCAGCAGCAGAAGTAGCAGCGTGGTCGACGAGGAGCCGTCT
ACGTCGTACGTACCGTCTCCCAGCGCGGAAGCGCCCGAGCTTCGCTTACC
GGATGATAGACAAGAGGATGGTGCCGGTGTGGGGATCTGCGGGTCGCCCA
TCCCTGCAACGATTGCCGCTGCTGCCGAGGCTCCTTCTTATGCTCGTGCT
TTGGGGGAATATAACTCGCCCACGCATGCTACGGTTGCCGCTGCTGCCAA
GTTTTTTTCTCCTCTTGCTCACGGTGCGAGGAACTGTGGTTCGCCGATGT
CTCCCACGGTTGCCGCTGCTGCTGAGGCTCTTTCTTCTGCTTGTGCCGCT
GCCTCCGCTGCCAGTGCTGCTAGTGCTGCCGCAGCGGAAAAAACTACTGA
ATCTCTCGCTGGCGAGGCAAGAAACGAGGAGTATGGAACGAGCGCTGCCA
ACGCCGAAACGCTCATCACGCACAATTGTATGCGTGCCCCCGTCGGCGAA
GCTAAAACGTCTAGGGTATGCGCAGGGGGCACGGCACATCCCAGGCAAGG
AGCGGCCACCGCGGGCGAAGAGAGGGACGATGCAGCCACCACAGCTCCAA
CCTCCGACGAGAGCATTACGAGCCCTGTCGGTTCGTCACCGGCAGCAGCC
GCCAGCAACGCCGACGTTTCTCCCGCCGCGTCCGCGTCGCGTGGGTTGCA
ACGACCTACCGTTGAGAATCAGGCCGTCCTCCCTGCCGGCGCGGGGGGGG
CTGGTGGTTCTCATCCTTCTCCGAAAGACGGAAATATTACGCAGTCAGCG
GAAGCTGGCAGCAACGCGAGCAGACCAGCCGGGTCTAGCGTCGAGGGTGC
TGGAATTAAGGGGACCGCGACGACGGCAACGGTACCGGAAGCGCCACCAA
CAGCTCAGGTAACGTCGGGATCAACCTCTGCGGCCACACCGCCAGTCGTG
GGTCCTACCGCGAGCAGTTCAGGAGTACCGGTCTCCACGACCTCGGGTTC
AGGCTCTTCGGCTTCGGCTTCGGCTTCGGCTTCGGCTTCGGCTTCGGCTT
CGGCTTCGGCTGCACCGGTGGCTCCGTCGACGACGATTCAGGCGGTGAAA
AAGTCAGCAGCAACATCGCATAGCAGCTCAAAGGCGAGGGCGCCTTCTGC
CAAGCGGTTTAAGCCCTGCTGCTTGTATCTACAGGTCGTTGGGCCTGCCC
CATCTGAGAAAAAGGTGCCGCCAGCAAGGAGAGTGGAGCTCGTGAGGCGA
GGCGCGAAGCCGGTGGACCTGTCGATTACTCTGGGGAAGCCGGGGATGTA
CACGGTGTACCTGACGGCCTCTCGGGATTGGAACGGCAGCGGGGTGGGCG
AGGACCCAGCGGAGCAGCCGATCAAGATCGAAAGCTTCACCCTTCCGGAC
AGCCTGTTCGCCGAAAATCACAAACCTATCTGCCATCAGTGCAAAAAGCC
TCTCGTCGGCAGACGAGCGCTCTGCAAGGACGCCCTCGGCTCGGGTCCTC
GTTGCCTGCGTTTGGTGCCCCCCTCGGGCCTAAGCTTCCTCGCCGACCTG
ACTGTCCAGGCGTTTGTGCCGCCCAAGCTACCCAGGGGGCGCACTTGCCT
GAAGTGCCGTGCTTGCGTCAACACTGCCACCACCGGGGGAGCGCCTGCTA
CTCCTAACCCCCCCACTTCCGCCACGACCAAAAGCGGTGAGTCGCTCGAA
ACGTTACAGAGTGACGGCGCTGTTGCTGTGAGGGTTGGGACACTGAAACC
GGCCGCCGGCAGTGGGAGCAACGCGGTAGTGGCTGCGGCGGCGGACCCTT
CTGCTACTGCGGTTCTTGATGGCGGAGGGCGGGTCGTCCCTGTCGCCCCT
GTCGTCCGCGTCGTACCACCGACGCCTTCTGTGCCGCAGCTGATGGATGC
CGCGGATTTTCTTGCTGCTGCTGCTGATGCTGATGCAAGAACAGCTGTTG
CTGAGGCCGCTACCGCCGCCGCCGCCGCCCGCCCCCCCGACGCCGCCACT
GAACCAAAGTCATGGTCGATCCACGACGCTCTGGGGCTGGAGCTCCCC
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