mRNA_P-littoralis_Contig103.100.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig103.100.1
Unique NamemRNA_P-littoralis_Contig103.100.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig103.100.1 vs. uniprot
Match: A0A6H5KHG3_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHG3_9PHAE)

HSP 1 Score: 143 bits (360), Expect = 1.780e-38
Identity = 86/167 (51.50%), Postives = 103/167 (61.68%), Query Frame = 3 
Query:  291 MTARPVGAASPDADDSEFFGDPE---GEELEGLLGQTPYIAEVPPAVAELEQHACSDPTTIRAKIATLAAELAIGARCNHATPLVTWKEDKVAASTCGLHQANIIAGIRMQDVLDRQTQRGEDVGYCLAARVRNQVYHEAAKDLGCYGAGNQCKAAKCMSAALGVFA 782
            MTARP GAA    +D+  F DP    GEELEGLL  +P      P +A + QHA   P TIR  I   AA LA  + C H  PLVTWK+D+ AA+TCG  QA +++    + VLDRQ     D GYCLA RVRNQVY++ + DL C+G GNQC A  CM AAL VFA
Sbjct:    1 MTARPDGAAEEGGEDT-LFDDPVEVVGEELEGLLRLSPPSTSSTPVLAIITQHAIDSPETIRDFIEETAARLAKESGCQHEAPLVTWKQDREAATTCGRLQAGVLS----RKVLDRQMTHDGDPGYCLAKRVRNQVYYDTSIDLDCHGKGNQCSAGTCMKAALQVFA 162
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BLAST of mRNA_P-littoralis_Contig103.100.1 vs. uniprot
Match: A0A6H5KG83_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG83_9PHAE)

HSP 1 Score: 105 bits (263), Expect = 1.500e-24
Identity = 69/144 (47.92%), Postives = 91/144 (63.19%), Query Frame = 3 
Query:  360 GEELEGLLG-QTPYIAEVPPAVAELEQHACSDPTTIRAKIATLAAELAIGARCNHATPLVTWKEDKVAASTCGLHQAN--IIAGIRMQDVLDRQTQRGEDVGYCLAARVRNQVYHEAAKDLGCYGAGNQCKAAKCMSAALGVFA 782
            GE   GL+  + P ++    AVA L QHA   P TI + I   A ELA G  C+H  P V+W+ED  + ++CGLHQ+   ++A +R+QDV  R     +D GYC+A RVRNQ Y++ AKDLGC+G GNQ KA +CM AA  VFA
Sbjct:   25 GELCSGLVRVEPPSLSSEDTAVAIL-QHARLHPETIGSFIQKKAEELAEGV-CDHHQPPVSWQEDP-STTSCGLHQSASAVLAAVRLQDVFTRYK---DDPGYCVAKRVRNQGYYDTAKDLGCFGRGNQLKAGECMCAATKVFA 162
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BLAST of mRNA_P-littoralis_Contig103.100.1 vs. uniprot
Match: A0A6H5KKJ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKJ8_9PHAE)

HSP 1 Score: 69.7 bits (169), Expect = 7.390e-12
Identity = 36/59 (61.02%), Postives = 42/59 (71.19%), Query Frame = 3 
Query:  606 RMQDVLDRQTQRGEDVGYCLAARVRNQVYHEAAKDLGCYGAGNQCKAAKCMSAALGVFA 782
            R QDV  R     +D GYC+A RVRNQVY++ AKDLGC+G GNQ KA +CM AA  VFA
Sbjct:   16 RQQDVCTRYK---DDPGYCVAKRVRNQVYYDTAKDLGCFGRGNQLKAGECMRAATKVFA 71
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BLAST of mRNA_P-littoralis_Contig103.100.1 vs. uniprot
Match: D7G5X1_ECTSI (Ubiquitinyl hydrolase 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5X1_ECTSI)

HSP 1 Score: 67.4 bits (163), Expect = 1.780e-10
Identity = 34/58 (58.62%), Postives = 40/58 (68.97%), Query Frame = 3 
Query:  609 MQDVLDRQTQRGEDVGYCLAARVRNQVYHEAAKDLGCYGAGNQCKAAKCMSAALGVFA 782
            +Q VLDR+  R  D GYCLA RVR+QVY+ A+ DL C G GNQC A  CM AA  V+A
Sbjct:   63 VQKVLDREVSRDGDAGYCLAKRVRHQVYYGASADLLCKGMGNQCTAGACMRAAAQVYA 120
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BLAST of mRNA_P-littoralis_Contig103.100.1 vs. uniprot
Match: A0A6H5KBF5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBF5_9PHAE)

HSP 1 Score: 63.9 bits (154), Expect = 7.280e-10
Identity = 33/54 (61.11%), Postives = 36/54 (66.67%), Query Frame = 3 
Query:  618 VLDRQTQRGEDVGYCLAARVRNQVYHEAAKDLGCYGAGNQCKAAKCMSAALGVF 779
            VLDRQ  R  D GYCLA RVR QVY+EA+ DL C G  NQC A  CM AA  V+
Sbjct:    3 VLDRQVSRDGDAGYCLANRVRYQVYYEASADLLCKGMDNQCTAGACMRAAAQVY 56
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BLAST of mRNA_P-littoralis_Contig103.100.1 vs. uniprot
Match: A0A6H5JMB2_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMB2_9PHAE)

HSP 1 Score: 61.2 bits (147), Expect = 7.780e-9
Identity = 32/51 (62.75%), Postives = 36/51 (70.59%), Query Frame = 3 
Query:  627 RQTQRGEDVGYCLAARVRNQVYHEAAKDLGCYGAGNQCKAAKCMSAALGVF 779
            RQ +   D GYCLA RVRNQVY++   DL   GAGNQC AA+CM AAL VF
Sbjct:    9 RQLKLDGDPGYCLAKRVRNQVYYDTPTDLLAKGAGNQCTAAECMVAALKVF 59
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig103.100.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5KHG3_9PHAE1.780e-3851.50Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KG83_9PHAE1.500e-2447.92Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KKJ8_9PHAE7.390e-1261.02Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G5X1_ECTSI1.780e-1058.62Ubiquitinyl hydrolase 1 n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KBF5_9PHAE7.280e-1061.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JMB2_9PHAE7.780e-962.75Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig103contigP-littoralis_Contig103:570269..571798 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size783
Hectar predicted targeting categoryother localisation
Exons2
Cds size672
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789369.7400196-UTR-P-littoralis_Contig103:570268..5703781680789369.7400196-UTR-P-littoralis_Contig103:570268..570378Pylaiella littoralis U1_48UTRP-littoralis_Contig103 570269..570378 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789369.7518094-CDS-P-littoralis_Contig103:570378..5708821680789369.7518094-CDS-P-littoralis_Contig103:570378..570882Pylaiella littoralis U1_48CDSP-littoralis_Contig103 570379..570882 +
1680789369.7625866-CDS-P-littoralis_Contig103:571630..5717981680789369.7625866-CDS-P-littoralis_Contig103:571630..571798Pylaiella littoralis U1_48CDSP-littoralis_Contig103 571631..571798 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig103.100.1prot_P-littoralis_Contig103.100.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig103 570379..571798 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig103.100.1

>prot_P-littoralis_Contig103.100.1 ID=prot_P-littoralis_Contig103.100.1|Name=mRNA_P-littoralis_Contig103.100.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=224bp
MSTCGSPDAKRPRTDISGSVGGGDNFKVKASCAPISPQKVQQQQQQEEGN
ETGAAAAGPSMTARPVGAASPDADDSEFFGDPEGEELEGLLGQTPYIAEV
PPAVAELEQHACSDPTTIRAKIATLAAELAIGARCNHATPLVTWKEDKVA
ASTCGLHQANIIAGIRMQDVLDRQTQRGEDVGYCLAARVRNQVYHEAAKD
LGCYGAGNQCKAAKCMSAALGVFA
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mRNA from alignment at P-littoralis_Contig103:570269..571798+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig103.100.1 ID=mRNA_P-littoralis_Contig103.100.1|Name=mRNA_P-littoralis_Contig103.100.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1530bp|location=Sequence derived from alignment at P-littoralis_Contig103:570269..571798+ (Pylaiella littoralis U1_48)
CGCAGAAACCCCCCTATGCAAAGAGCAGGTCACCACTGACATATTCAGCA
CCCTCTTGCCCGCGGTAGAGGAGCGTATTTCCACCCAAACAACCGCGGAT
AGGCTTGAGGATGAGTACCTGCGGTAGCCCCGACGCCAAGCGTCCCCGCA
CAGACATCAGCGGTTCCGTTGGGGGAGGTGACAATTTCAAGGTGAAAGCC
AGCTGTGCGCCAATTTCACCGCAAAAAGTTCAGCAGCAGCAGCAGCAGGA
AGAAGGTAACGAAACCGGCGCTGCCGCGGCAGGGCCTTCGATGACGGCCA
GGCCCGTTGGCGCCGCCAGTCCTGATGCTGATGATTCCGAGTTCTTCGGC
GACCCCGAAGGGGAGGAGCTGGAGGGGTTGCTGGGGCAGACGCCATACAT
TGCGGAGGTGCCCCCCGCCGTGGCGGAGCTTGAACAGCATGCCTGTAGCG
ACCCGACCACGATCAGGGCTAAGATCGCGACACTGGCAGCGGAGTTGGCA
ATTGGAGCGAGATGCAACCACGCTACGCCTCTTGTGACATGGAAGGAGGA
TAAGGTCGCCGCGAGTACTTGTGGGCTTCACCAGGCTAACATCATAGCCG
GGATACGCATGCAGGTTGGTCAAGCAAAAAATAAAAGCATACCGCCGGAA
CAACAGCAGCAGCAGCAGACTTATCCAGTTGAAAACATACCGTCCAATGT
ACAGTAGTGGCACATGAACATGAGCATCACATGTGGTATACACTGAGACA
TCATAGTCTTGTACTTCGAGTATGTATGTGTAGTTAGGAGTATGTATGTG
CGTATATACTGTATGTATAATATGGATATATATATATATATGTATTGTCT
GTGTGCAATATACTACTGTATTTGTACTTCGTATGTACGGCTGTACTGCT
GTATACTCCGTACGAGTATTTATATTACACGTTATCTACAGCAGCTGTAC
TGCTGTATGTAAATATTATATCATACACGCAGTATACTTCGTGTACGATG
TACTGCTGTATGTTTAGTCCGGGCTTGAAAATGCGGTGGCGGCAGTGGGG
GACTGTTTGCACTGTCCTAAAGTAAAAAGAGCTTTTGTTATATATACATA
GGATGTATCCAATTTTATAGATACCAATATTGAGAGTGTATGCCGCCTGT
ACAGAGATACCCTCCCCCCCCCCTGCCGTGTCGTTGGTAAAGCAGTGCAC
AGCAGTCGCCCTCCTGGGTTACTTCTAGCCTCGCAGCCAACTGAAAATGG
TCGTTTGTCCAATGGTGTTTGCGTCCTACAAAAGTGCATCAGGAATAACT
TTGTCCTGACAGGCGAGCAGATTCCCAATCCCACTGCCCTCCACGCGCGG
TTCCTTGAACAGGATGTTCTCGACCGGCAGACGCAAAGGGGTGAAGATGT
TGGGTACTGCCTCGCGGCGCGTGTGCGCAACCAGGTGTATCATGAGGCCG
CAAAGGACCTCGGGTGCTATGGAGCCGGCAACCAGTGCAAGGCTGCGAAG
TGCATGAGTGCAGCTCTTGGCGTTTTCGCC
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Coding sequence (CDS) from alignment at P-littoralis_Contig103:570269..571798+

>mRNA_P-littoralis_Contig103.100.1 ID=mRNA_P-littoralis_Contig103.100.1|Name=mRNA_P-littoralis_Contig103.100.1|organism=Pylaiella littoralis U1_48|type=CDS|length=672bp|location=Sequence derived from alignment at P-littoralis_Contig103:570269..571798+ (Pylaiella littoralis U1_48)
ATGAGTACCTGCGGTAGCCCCGACGCCAAGCGTCCCCGCACAGACATCAG
CGGTTCCGTTGGGGGAGGTGACAATTTCAAGGTGAAAGCCAGCTGTGCGC
CAATTTCACCGCAAAAAGTTCAGCAGCAGCAGCAGCAGGAAGAAGGTAAC
GAAACCGGCGCTGCCGCGGCAGGGCCTTCGATGACGGCCAGGCCCGTTGG
CGCCGCCAGTCCTGATGCTGATGATTCCGAGTTCTTCGGCGACCCCGAAG
GGGAGGAGCTGGAGGGGTTGCTGGGGCAGACGCCATACATTGCGGAGGTG
CCCCCCGCCGTGGCGGAGCTTGAACAGCATGCCTGTAGCGACCCGACCAC
GATCAGGGCTAAGATCGCGACACTGGCAGCGGAGTTGGCAATTGGAGCGA
GATGCAACCACGCTACGCCTCTTGTGACATGGAAGGAGGATAAGGTCGCC
GCGAGTACTTGTGGGCTTCACCAGGCTAACATCATAGCCGGGATACGCAT
GCAGGATGTTCTCGACCGGCAGACGCAAAGGGGTGAAGATGTTGGGTACT
GCCTCGCGGCGCGTGTGCGCAACCAGGTGTATCATGAGGCCGCAAAGGAC
CTCGGGTGCTATGGAGCCGGCAACCAGTGCAAGGCTGCGAAGTGCATGAG
TGCAGCTCTTGGCGTTTTCGCC
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