mRNA_P-littoralis_Contig1029.6.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig1029.6.1 vs. uniprot
Match: A0A6H5JNV8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNV8_9PHAE) HSP 1 Score: 112 bits (280), Expect = 3.940e-28 Identity = 57/111 (51.35%), Postives = 80/111 (72.07%), Query Frame = 1
Query: 1 SVEATVRKRRLCFAGFVTRMREERLPKIALLGKLHGGARYLGGQEFDWLRRMQEDLEAFDIVVDKKEG-WEASAKRADEWYDRIDEGARRFTDEWLKKEGDLSETRRRKRE 330
++EATVRKRRLCFAGFV RM + RLPK LLG + GG Y GGQE DW+ R+ EDL AF++ +K+ G W+ SAK ++ WY+++++GA F +W ++E + S R+R RE
Sbjct: 63 TIEATVRKRRLCFAGFVLRMEDSRLPKRMLLGAMAGGVGYRGGQESDWVSRLGEDLVAFNMGDEKEGGKWKESAKNSEVWYNKVEDGAAWFMRKWHRQEAEASAKRQRARE 173
BLAST of mRNA_P-littoralis_Contig1029.6.1 vs. uniprot
Match: A0A6H5JX67_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JX67_9PHAE) HSP 1 Score: 107 bits (268), Expect = 6.610e-27 Identity = 55/106 (51.89%), Postives = 75/106 (70.75%), Query Frame = 1
Query: 1 SVEATVRKRRLCFAGFVTRMREERLPKIALLGKLHGGARYLGGQEFDWLRRMQEDLEAFDIVVDKKEG-WEASAKRADEWYDRIDEGARRFTDEWLKKEGDLSETR 315
++EATVRKRRLCFAGFVTRM + RLPK LLG + GG Y GGQE DW+ R+ E L AF++ DK+ G W+ SAK + WY+++++GA F +W ++E + S R
Sbjct: 52 TIEATVRKRRLCFAGFVTRMEDNRLPKRMLLGAMAGGVGYRGGQERDWVSRLGEGLVAFNMGDDKEGGKWKESAKDPEVWYNKVEDGAAWFMRKWHRQEAEASAKR 157
BLAST of mRNA_P-littoralis_Contig1029.6.1 vs. uniprot
Match: A0A6H5L2Q0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2Q0_9PHAE) HSP 1 Score: 109 bits (272), Expect = 8.990e-27 Identity = 55/108 (50.93%), Postives = 78/108 (72.22%), Query Frame = 1
Query: 1 SVEATVRKRRLCFAGFVTRMREERLPKIALLGKLHGGARYLGGQEFDWLRRMQEDLEAFDIVVDKKEG-WEASAKRADEWYDRIDEGARRFTDEWLKKEGDLSETRRR 321
++EATVRKRRLCFAGFV RM++ RLPK LLG + GG Y GGQE DW+ R+ EDL AF++ +K+ G W+ SAK + WY+++++GA F +W ++E + S R+R
Sbjct: 79 TIEATVRKRRLCFAGFVMRMKDSRLPKRMLLGAMAGGVGYRGGQESDWVSRLGEDLVAFNMGDEKEGGKWKESAKDPEVWYNKVEDGAAWFMRKWHRQEAEASAKRQR 186
BLAST of mRNA_P-littoralis_Contig1029.6.1 vs. uniprot
Match: A0A6H5L172_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L172_9PHAE) HSP 1 Score: 107 bits (266), Expect = 3.840e-26 Identity = 58/115 (50.43%), Postives = 79/115 (68.70%), Query Frame = 1
Query: 1 SVEATVRKRRLCFAGFVTRMREERLPKIALLGKLHGGARYLGGQEFDWLRRMQEDLEAFDIVVDKKEG--WEASAKRADEWYDRIDEGARRFTDEWLKKEGDLSETRRRKRERDA 339
++EATVRKRRL FAGFV RM + RL K LLG + GG Y GGQE DW+ R+ EDL AF + D+KEG W+ SAK + WY+++++GA F +W ++E + S R+R RE +A
Sbjct: 52 TIEATVRKRRLWFAGFVMRMEDSRLSKRMLLGAMAGGVGYRGGQESDWVSRLGEDLVAFFNMGDEKEGGKWKESAKDPEVWYNKVEDGAAWFMRKWHRQEAEASAKRQRAREAEA 166
BLAST of mRNA_P-littoralis_Contig1029.6.1 vs. uniprot
Match: A0A6H5LD24_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LD24_9PHAE) HSP 1 Score: 111 bits (278), Expect = 5.520e-26 Identity = 58/110 (52.73%), Postives = 77/110 (70.00%), Query Frame = 1
Query: 1 SVEATVRKRRLCFAGFVTRMREERLPKIALLGKLHGGARYLGGQEFDWLRRMQEDLEAFDIVVDKKEG-WEASAKRADEWYDRIDEGARRFTDEWLKKEGDLSETRRRKR 327
++EATVRKRRLCFAGFV RM + RLPK LLG + GG Y GGQE DW+ R+ EDL AF + +K+ G W+ SAK + WYD+I++GA F +W ++E + S R+R R
Sbjct: 373 TIEATVRKRRLCFAGFVMRMEDNRLPKRMLLGAMAGGTGYRGGQESDWVYRLGEDLVAFGMKEEKEGGRWKESAKDQEAWYDKIEDGAAWFMRKWHRQEAEASAKRQRAR 482
BLAST of mRNA_P-littoralis_Contig1029.6.1 vs. uniprot
Match: A0A6H5KGF6_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGF6_9PHAE) HSP 1 Score: 106 bits (265), Expect = 9.920e-26 Identity = 56/114 (49.12%), Postives = 79/114 (69.30%), Query Frame = 1
Query: 1 SVEATVRKRRLCFAGFVTRMREERLPKIALLGKLHGGARYLGGQEFDWLRRMQEDLEAFDIVVDKKEG-WEASAKRADEWYDRIDEGARRFTDEWLKKEGDLSETRRRKRERDA 339
++EATVRKRRLCFAGFV RM + RLPK LLG + GG Y GGQE DW+ R+ EDL AF++ +K+ G W+ SAK + WY+++++ A F +W ++E + S +R RE +A
Sbjct: 79 TIEATVRKRRLCFAGFVMRMEDSRLPKHMLLGAMAGGVGYRGGQESDWVSRLGEDLVAFNMGDEKEGGKWKESAKDPEVWYNKVEDVATWFMRKWHRQEAETSAKHQRAREAEA 192
BLAST of mRNA_P-littoralis_Contig1029.6.1 vs. uniprot
Match: A0A6H5JGX2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGX2_9PHAE) HSP 1 Score: 111 bits (277), Expect = 1.270e-25 Identity = 57/114 (50.00%), Postives = 81/114 (71.05%), Query Frame = 1
Query: 1 SVEATVRKRRLCFAGFVTRMREERLPKIALLGKLHGGARYLGGQEFDWLRRMQEDLEAFDIVVDKKEG-WEASAKRADEWYDRIDEGARRFTDEWLKKEGDLSETRRRKRERDA 339
++EATVRKRRLCFAGFV RM + RLPK LLG + GG Y GGQE DW+ R+ EDL AF++ +K+ G W+ SAK + WY+++++GA F +W ++E + S R+R +E +A
Sbjct: 697 TIEATVRKRRLCFAGFVMRMEDSRLPKRMLLGAMAGGVGYRGGQESDWVSRLGEDLVAFNMSDEKEGGKWKESAKDPEVWYNKVEDGAAWFMRKWHRQEAEASAKRQRAKEAEA 810
BLAST of mRNA_P-littoralis_Contig1029.6.1 vs. uniprot
Match: A0A6H5JYX0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYX0_9PHAE) HSP 1 Score: 105 bits (263), Expect = 1.280e-25 Identity = 58/115 (50.43%), Postives = 80/115 (69.57%), Query Frame = 1
Query: 1 SVEATVRKRRLCFAGFVT-RMREERLPKIALLGKLHGGARYLGGQEFDWLRRMQEDLEAFDIVVDKKEG-WEASAKRADEWYDRIDEGARRFTDEWLKKEGDLSETRRRKRERDA 339
++EATVRKRRLCFAGFV RM + RLPK LLG + GG Y GGQE DW+ R+ EDL AF++ +K+ G W+ SAK + WY++I++GA +W ++E + S R+R RE +A
Sbjct: 77 TIEATVRKRRLCFAGFVVVRMEDSRLPKRMLLGAMAGGVGYRGGQESDWVSRLGEDLVAFNMGDEKEGGKWKESAKGPEVWYNKIEDGAAWLMRKWHRQEAEASAKRQRARETEA 191
BLAST of mRNA_P-littoralis_Contig1029.6.1 vs. uniprot
Match: A0A6H5K0C0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0C0_9PHAE) HSP 1 Score: 107 bits (268), Expect = 2.280e-25 Identity = 53/102 (51.96%), Postives = 74/102 (72.55%), Query Frame = 1
Query: 1 SVEATVRKRRLCFAGFVTRMREERLPKIALLGKLHGGARYLGGQEFDWLRRMQEDLEAFDIVVDKKEG-WEASAKRADEWYDRIDEGARRFTDEWLKKEGDL 303
++EATVRKRRLCFAGFV RM + RLPK LLG + GG Y GGQE DW+ R+ EDL AF++ +K+ G W+ SAK + WY+++ +GA RF +W ++E ++
Sbjct: 227 TIEATVRKRRLCFAGFVMRMEDSRLPKRMLLGAMAGGVGYRGGQESDWVSRLGEDLVAFNMGDEKEGGKWKESAKDPEVWYNKVKDGAARFMRKWHRQEAEV 328
BLAST of mRNA_P-littoralis_Contig1029.6.1 vs. uniprot
Match: A0A6H5L649_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L649_9PHAE) HSP 1 Score: 107 bits (266), Expect = 2.430e-25 Identity = 56/111 (50.45%), Postives = 78/111 (70.27%), Query Frame = 1
Query: 1 SVEATVRKRRLCFAGFVTRMREERLPKIALLGKLHGGARYLGGQEFDWLRRMQEDLEAFDIVVDKKEG-WEASAKRADEWYDRIDEGARRFTDEWLKKEGDLSETRRRKRE 330
++EATVRKRRLCFAGFV RM + RLPK LLG + GG Y GGQE DW+ R+ EDL AF++ +K+ G W+ SAK + WY ++++GA F +W ++E + S R+R+ E
Sbjct: 183 TIEATVRKRRLCFAGFVMRMEDNRLPKHILLGAMAGGVGYRGGQEDDWVSRLGEDLVAFNMGDEKEGGKWKESAKDPEVWYHKVEDGAAWFMRKWHRQEAEESAKRQREGE 293 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1029.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig1029.6.1 >prot_P-littoralis_Contig1029.6.1 ID=prot_P-littoralis_Contig1029.6.1|Name=mRNA_P-littoralis_Contig1029.6.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=144bp SVEATVRKRRLCFAGFVTRMREERLPKIALLGKLHGGARYLGGQEFDWLRback to top mRNA from alignment at P-littoralis_Contig1029:26970..27401- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig1029.6.1 ID=mRNA_P-littoralis_Contig1029.6.1|Name=mRNA_P-littoralis_Contig1029.6.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=432bp|location=Sequence derived from alignment at P-littoralis_Contig1029:26970..27401- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig1029:26970..27401- >mRNA_P-littoralis_Contig1029.6.1 ID=mRNA_P-littoralis_Contig1029.6.1|Name=mRNA_P-littoralis_Contig1029.6.1|organism=Pylaiella littoralis U1_48|type=CDS|length=432bp|location=Sequence derived from alignment at P-littoralis_Contig1029:26970..27401- (Pylaiella littoralis U1_48)back to top |