mRNA_P-littoralis_Contig1029.6.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1029.6.1
Unique NamemRNA_P-littoralis_Contig1029.6.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig1029.6.1 vs. uniprot
Match: A0A6H5JNV8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNV8_9PHAE)

HSP 1 Score: 112 bits (280), Expect = 3.940e-28
Identity = 57/111 (51.35%), Postives = 80/111 (72.07%), Query Frame = 1
Query:    1 SVEATVRKRRLCFAGFVTRMREERLPKIALLGKLHGGARYLGGQEFDWLRRMQEDLEAFDIVVDKKEG-WEASAKRADEWYDRIDEGARRFTDEWLKKEGDLSETRRRKRE 330
            ++EATVRKRRLCFAGFV RM + RLPK  LLG + GG  Y GGQE DW+ R+ EDL AF++  +K+ G W+ SAK ++ WY+++++GA  F  +W ++E + S  R+R RE
Sbjct:   63 TIEATVRKRRLCFAGFVLRMEDSRLPKRMLLGAMAGGVGYRGGQESDWVSRLGEDLVAFNMGDEKEGGKWKESAKNSEVWYNKVEDGAAWFMRKWHRQEAEASAKRQRARE 173          
BLAST of mRNA_P-littoralis_Contig1029.6.1 vs. uniprot
Match: A0A6H5JX67_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JX67_9PHAE)

HSP 1 Score: 107 bits (268), Expect = 6.610e-27
Identity = 55/106 (51.89%), Postives = 75/106 (70.75%), Query Frame = 1
Query:    1 SVEATVRKRRLCFAGFVTRMREERLPKIALLGKLHGGARYLGGQEFDWLRRMQEDLEAFDIVVDKKEG-WEASAKRADEWYDRIDEGARRFTDEWLKKEGDLSETR 315
            ++EATVRKRRLCFAGFVTRM + RLPK  LLG + GG  Y GGQE DW+ R+ E L AF++  DK+ G W+ SAK  + WY+++++GA  F  +W ++E + S  R
Sbjct:   52 TIEATVRKRRLCFAGFVTRMEDNRLPKRMLLGAMAGGVGYRGGQERDWVSRLGEGLVAFNMGDDKEGGKWKESAKDPEVWYNKVEDGAAWFMRKWHRQEAEASAKR 157          
BLAST of mRNA_P-littoralis_Contig1029.6.1 vs. uniprot
Match: A0A6H5L2Q0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2Q0_9PHAE)

HSP 1 Score: 109 bits (272), Expect = 8.990e-27
Identity = 55/108 (50.93%), Postives = 78/108 (72.22%), Query Frame = 1
Query:    1 SVEATVRKRRLCFAGFVTRMREERLPKIALLGKLHGGARYLGGQEFDWLRRMQEDLEAFDIVVDKKEG-WEASAKRADEWYDRIDEGARRFTDEWLKKEGDLSETRRR 321
            ++EATVRKRRLCFAGFV RM++ RLPK  LLG + GG  Y GGQE DW+ R+ EDL AF++  +K+ G W+ SAK  + WY+++++GA  F  +W ++E + S  R+R
Sbjct:   79 TIEATVRKRRLCFAGFVMRMKDSRLPKRMLLGAMAGGVGYRGGQESDWVSRLGEDLVAFNMGDEKEGGKWKESAKDPEVWYNKVEDGAAWFMRKWHRQEAEASAKRQR 186          
BLAST of mRNA_P-littoralis_Contig1029.6.1 vs. uniprot
Match: A0A6H5L172_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L172_9PHAE)

HSP 1 Score: 107 bits (266), Expect = 3.840e-26
Identity = 58/115 (50.43%), Postives = 79/115 (68.70%), Query Frame = 1
Query:    1 SVEATVRKRRLCFAGFVTRMREERLPKIALLGKLHGGARYLGGQEFDWLRRMQEDLEAFDIVVDKKEG--WEASAKRADEWYDRIDEGARRFTDEWLKKEGDLSETRRRKRERDA 339
            ++EATVRKRRL FAGFV RM + RL K  LLG + GG  Y GGQE DW+ R+ EDL AF  + D+KEG  W+ SAK  + WY+++++GA  F  +W ++E + S  R+R RE +A
Sbjct:   52 TIEATVRKRRLWFAGFVMRMEDSRLSKRMLLGAMAGGVGYRGGQESDWVSRLGEDLVAFFNMGDEKEGGKWKESAKDPEVWYNKVEDGAAWFMRKWHRQEAEASAKRQRAREAEA 166          
BLAST of mRNA_P-littoralis_Contig1029.6.1 vs. uniprot
Match: A0A6H5LD24_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LD24_9PHAE)

HSP 1 Score: 111 bits (278), Expect = 5.520e-26
Identity = 58/110 (52.73%), Postives = 77/110 (70.00%), Query Frame = 1
Query:    1 SVEATVRKRRLCFAGFVTRMREERLPKIALLGKLHGGARYLGGQEFDWLRRMQEDLEAFDIVVDKKEG-WEASAKRADEWYDRIDEGARRFTDEWLKKEGDLSETRRRKR 327
            ++EATVRKRRLCFAGFV RM + RLPK  LLG + GG  Y GGQE DW+ R+ EDL AF +  +K+ G W+ SAK  + WYD+I++GA  F  +W ++E + S  R+R R
Sbjct:  373 TIEATVRKRRLCFAGFVMRMEDNRLPKRMLLGAMAGGTGYRGGQESDWVYRLGEDLVAFGMKEEKEGGRWKESAKDQEAWYDKIEDGAAWFMRKWHRQEAEASAKRQRAR 482          
BLAST of mRNA_P-littoralis_Contig1029.6.1 vs. uniprot
Match: A0A6H5KGF6_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGF6_9PHAE)

HSP 1 Score: 106 bits (265), Expect = 9.920e-26
Identity = 56/114 (49.12%), Postives = 79/114 (69.30%), Query Frame = 1
Query:    1 SVEATVRKRRLCFAGFVTRMREERLPKIALLGKLHGGARYLGGQEFDWLRRMQEDLEAFDIVVDKKEG-WEASAKRADEWYDRIDEGARRFTDEWLKKEGDLSETRRRKRERDA 339
            ++EATVRKRRLCFAGFV RM + RLPK  LLG + GG  Y GGQE DW+ R+ EDL AF++  +K+ G W+ SAK  + WY+++++ A  F  +W ++E + S   +R RE +A
Sbjct:   79 TIEATVRKRRLCFAGFVMRMEDSRLPKHMLLGAMAGGVGYRGGQESDWVSRLGEDLVAFNMGDEKEGGKWKESAKDPEVWYNKVEDVATWFMRKWHRQEAETSAKHQRAREAEA 192          
BLAST of mRNA_P-littoralis_Contig1029.6.1 vs. uniprot
Match: A0A6H5JGX2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGX2_9PHAE)

HSP 1 Score: 111 bits (277), Expect = 1.270e-25
Identity = 57/114 (50.00%), Postives = 81/114 (71.05%), Query Frame = 1
Query:    1 SVEATVRKRRLCFAGFVTRMREERLPKIALLGKLHGGARYLGGQEFDWLRRMQEDLEAFDIVVDKKEG-WEASAKRADEWYDRIDEGARRFTDEWLKKEGDLSETRRRKRERDA 339
            ++EATVRKRRLCFAGFV RM + RLPK  LLG + GG  Y GGQE DW+ R+ EDL AF++  +K+ G W+ SAK  + WY+++++GA  F  +W ++E + S  R+R +E +A
Sbjct:  697 TIEATVRKRRLCFAGFVMRMEDSRLPKRMLLGAMAGGVGYRGGQESDWVSRLGEDLVAFNMSDEKEGGKWKESAKDPEVWYNKVEDGAAWFMRKWHRQEAEASAKRQRAKEAEA 810          
BLAST of mRNA_P-littoralis_Contig1029.6.1 vs. uniprot
Match: A0A6H5JYX0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYX0_9PHAE)

HSP 1 Score: 105 bits (263), Expect = 1.280e-25
Identity = 58/115 (50.43%), Postives = 80/115 (69.57%), Query Frame = 1
Query:    1 SVEATVRKRRLCFAGFVT-RMREERLPKIALLGKLHGGARYLGGQEFDWLRRMQEDLEAFDIVVDKKEG-WEASAKRADEWYDRIDEGARRFTDEWLKKEGDLSETRRRKRERDA 339
            ++EATVRKRRLCFAGFV  RM + RLPK  LLG + GG  Y GGQE DW+ R+ EDL AF++  +K+ G W+ SAK  + WY++I++GA     +W ++E + S  R+R RE +A
Sbjct:   77 TIEATVRKRRLCFAGFVVVRMEDSRLPKRMLLGAMAGGVGYRGGQESDWVSRLGEDLVAFNMGDEKEGGKWKESAKGPEVWYNKIEDGAAWLMRKWHRQEAEASAKRQRARETEA 191          
BLAST of mRNA_P-littoralis_Contig1029.6.1 vs. uniprot
Match: A0A6H5K0C0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0C0_9PHAE)

HSP 1 Score: 107 bits (268), Expect = 2.280e-25
Identity = 53/102 (51.96%), Postives = 74/102 (72.55%), Query Frame = 1
Query:    1 SVEATVRKRRLCFAGFVTRMREERLPKIALLGKLHGGARYLGGQEFDWLRRMQEDLEAFDIVVDKKEG-WEASAKRADEWYDRIDEGARRFTDEWLKKEGDL 303
            ++EATVRKRRLCFAGFV RM + RLPK  LLG + GG  Y GGQE DW+ R+ EDL AF++  +K+ G W+ SAK  + WY+++ +GA RF  +W ++E ++
Sbjct:  227 TIEATVRKRRLCFAGFVMRMEDSRLPKRMLLGAMAGGVGYRGGQESDWVSRLGEDLVAFNMGDEKEGGKWKESAKDPEVWYNKVKDGAARFMRKWHRQEAEV 328          
BLAST of mRNA_P-littoralis_Contig1029.6.1 vs. uniprot
Match: A0A6H5L649_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L649_9PHAE)

HSP 1 Score: 107 bits (266), Expect = 2.430e-25
Identity = 56/111 (50.45%), Postives = 78/111 (70.27%), Query Frame = 1
Query:    1 SVEATVRKRRLCFAGFVTRMREERLPKIALLGKLHGGARYLGGQEFDWLRRMQEDLEAFDIVVDKKEG-WEASAKRADEWYDRIDEGARRFTDEWLKKEGDLSETRRRKRE 330
            ++EATVRKRRLCFAGFV RM + RLPK  LLG + GG  Y GGQE DW+ R+ EDL AF++  +K+ G W+ SAK  + WY ++++GA  F  +W ++E + S  R+R+ E
Sbjct:  183 TIEATVRKRRLCFAGFVMRMEDNRLPKHILLGAMAGGVGYRGGQEDDWVSRLGEDLVAFNMGDEKEGGKWKESAKDPEVWYHKVEDGAAWFMRKWHRQEAEESAKRQREGE 293          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1029.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JNV8_9PHAE3.940e-2851.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JX67_9PHAE6.610e-2751.89Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5L2Q0_9PHAE8.990e-2750.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L172_9PHAE3.840e-2650.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5LD24_9PHAE5.520e-2652.73Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KGF6_9PHAE9.920e-2649.12Uncharacterized protein n=4 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JGX2_9PHAE1.270e-2550.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JYX0_9PHAE1.280e-2550.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K0C0_9PHAE2.280e-2551.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L649_9PHAE2.430e-2550.45Reverse transcriptase domain-containing protein n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1029contigP-littoralis_Contig1029:26970..27401 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog7739.XP_002592449.1
PFAMsRVT_1
Model size432
Max annot lvl33208|Metazoa
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.69e-05
EggNOG OGsKOG1075@1|root,KOG1075@2759|Eukaryota,3A35Z@33154|Opisthokonta,3BQYF@33208|Metazoa,3D7GC@33213|Bilateria,48EZY@7711|Chordata
DescriptionRibonuclease H protein
Cds size432
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789366.1881425-CDS-P-littoralis_Contig1029:26969..274011680789366.1881425-CDS-P-littoralis_Contig1029:26969..27401Pylaiella littoralis U1_48CDSP-littoralis_Contig1029 26970..27401 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1029.6.1prot_P-littoralis_Contig1029.6.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1029 26970..27401 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1029.6.1

>prot_P-littoralis_Contig1029.6.1 ID=prot_P-littoralis_Contig1029.6.1|Name=mRNA_P-littoralis_Contig1029.6.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=144bp
SVEATVRKRRLCFAGFVTRMREERLPKIALLGKLHGGARYLGGQEFDWLR
RMQEDLEAFDIVVDKKEGWEASAKRADEWYDRIDEGARRFTDEWLKKEGD
LSETRRRKRERDAAEGQALTKRGRTDGGDKREEGYVGAQGQRGS
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mRNA from alignment at P-littoralis_Contig1029:26970..27401-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1029.6.1 ID=mRNA_P-littoralis_Contig1029.6.1|Name=mRNA_P-littoralis_Contig1029.6.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=432bp|location=Sequence derived from alignment at P-littoralis_Contig1029:26970..27401- (Pylaiella littoralis U1_48)
AGCGTTGAGGCCACCGTGCGCAAACGGCGACTGTGCTTCGCAGGATTCGT TACGCGCATGAGAGAGGAGAGACTCCCGAAAATTGCTCTTTTGGGAAAAT TGCATGGGGGAGCGAGGTATCTGGGGGGGCAAGAGTTTGACTGGCTGAGG CGAATGCAGGAGGACCTCGAAGCGTTCGACATCGTGGTCGACAAAAAAGA GGGGTGGGAGGCAAGTGCCAAGAGAGCTGACGAGTGGTACGACAGGATCG ACGAGGGTGCGCGGCGGTTCACGGACGAGTGGCTCAAGAAAGAGGGAGAC TTATCAGAGACACGTCGACGGAAAAGGGAGAGGGATGCGGCTGAGGGGCA GGCCTTGACCAAAAGAGGGAGAACGGATGGCGGGGATAAACGAGAGGAGG GGTACGTGGGGGCACAAGGGCAGCGGGGTAGT
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Coding sequence (CDS) from alignment at P-littoralis_Contig1029:26970..27401-

>mRNA_P-littoralis_Contig1029.6.1 ID=mRNA_P-littoralis_Contig1029.6.1|Name=mRNA_P-littoralis_Contig1029.6.1|organism=Pylaiella littoralis U1_48|type=CDS|length=432bp|location=Sequence derived from alignment at P-littoralis_Contig1029:26970..27401- (Pylaiella littoralis U1_48)
AGCGTTGAGGCCACCGTGCGCAAACGGCGACTGTGCTTCGCAGGATTCGT
TACGCGCATGAGAGAGGAGAGACTCCCGAAAATTGCTCTTTTGGGAAAAT
TGCATGGGGGAGCGAGGTATCTGGGGGGGCAAGAGTTTGACTGGCTGAGG
CGAATGCAGGAGGACCTCGAAGCGTTCGACATCGTGGTCGACAAAAAAGA
GGGGTGGGAGGCAAGTGCCAAGAGAGCTGACGAGTGGTACGACAGGATCG
ACGAGGGTGCGCGGCGGTTCACGGACGAGTGGCTCAAGAAAGAGGGAGAC
TTATCAGAGACACGTCGACGGAAAAGGGAGAGGGATGCGGCTGAGGGGCA
GGCCTTGACCAAAAGAGGGAGAACGGATGGCGGGGATAAACGAGAGGAGG
GGTACGTGGGGGCACAAGGGCAGCGGGGTAGT
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