mRNA_P-littoralis_Contig1029.24.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1029.24.1
Unique NamemRNA_P-littoralis_Contig1029.24.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1029.24.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1029contigP-littoralis_Contig1029:55113..55720 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size608
Hectar predicted targeting categoryother localisation
Exons1
Cds size345
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789365.9276118-UTR-P-littoralis_Contig1029:55112..553741680789365.9276118-UTR-P-littoralis_Contig1029:55112..55374Pylaiella littoralis U1_48UTRP-littoralis_Contig1029 55113..55374 -
1680789365.9529128-UTR-P-littoralis_Contig1029:55719..557201680789365.9529128-UTR-P-littoralis_Contig1029:55719..55720Pylaiella littoralis U1_48UTRP-littoralis_Contig1029 55720..55720 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789365.93811-CDS-P-littoralis_Contig1029:55374..557191680789365.93811-CDS-P-littoralis_Contig1029:55374..55719Pylaiella littoralis U1_48CDSP-littoralis_Contig1029 55375..55719 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1029.24.1prot_P-littoralis_Contig1029.24.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1029 55375..55719 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1029.24.1

>prot_P-littoralis_Contig1029.24.1 ID=prot_P-littoralis_Contig1029.24.1|Name=mRNA_P-littoralis_Contig1029.24.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=115bp
MWGCRSWLFYFALPATTREAKKKMKKITACERRVVVNARNRWSPRPQPFD
IDIDLKFRCAEGVGYCPHPRSGHALVCAVGGVMVCASASLCGDRQLGSCD
VFPIIHTRTNTAKT*
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mRNA from alignment at P-littoralis_Contig1029:55113..55720-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1029.24.1 ID=mRNA_P-littoralis_Contig1029.24.1|Name=mRNA_P-littoralis_Contig1029.24.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=608bp|location=Sequence derived from alignment at P-littoralis_Contig1029:55113..55720- (Pylaiella littoralis U1_48)
CATGTGGGGTTGTCGGTCTTGGCTTTTCTATTTTGCCCTGCCGGCAACGA
CACGGGAAGCAAAAAAAAAAATGAAAAAAATAACAGCGTGTGAGCGGCGT
GTGGTGGTTAACGCACGAAATCGATGGAGCCCTCGGCCCCAACCCTTCGA
CATCGACATCGACTTGAAATTTCGATGCGCGGAGGGGGTGGGTTACTGCC
CTCATCCACGATCGGGGCATGCTCTGGTGTGTGCCGTGGGCGGGGTGATG
GTGTGTGCTTCTGCAAGCCTTTGTGGCGATCGGCAACTCGGCTCTTGCGA
CGTTTTTCCTATAATACATACACGTACAAACACGGCGAAGACTTGATGTT
TTCGCCGCTCTGCGGTCACTGGCTGTTGCCGCCTTGACGTAATGTGTCCT
CGCTCGAGACTCTCAACGCCGCCGTACAATGTACTGCTTTTGCTCTCCCT
CGCGTTCCTCGTGCCGTATGTTCGCATAACGGGAGATTGCGTTGTCTCGT
CCGTGGGTGGAATTTGACGTGTCGTATTCTATCCGCTCTCTGCAGCAGGA
AGACCGGTCCTTGCACAGATTTTCAACACCTTTCACGAACTGATGTGCAA
CACCTTCC
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Coding sequence (CDS) from alignment at P-littoralis_Contig1029:55113..55720-

>mRNA_P-littoralis_Contig1029.24.1 ID=mRNA_P-littoralis_Contig1029.24.1|Name=mRNA_P-littoralis_Contig1029.24.1|organism=Pylaiella littoralis U1_48|type=CDS|length=345bp|location=Sequence derived from alignment at P-littoralis_Contig1029:55113..55720- (Pylaiella littoralis U1_48)
ATGTGGGGTTGTCGGTCTTGGCTTTTCTATTTTGCCCTGCCGGCAACGAC
ACGGGAAGCAAAAAAAAAAATGAAAAAAATAACAGCGTGTGAGCGGCGTG
TGGTGGTTAACGCACGAAATCGATGGAGCCCTCGGCCCCAACCCTTCGAC
ATCGACATCGACTTGAAATTTCGATGCGCGGAGGGGGTGGGTTACTGCCC
TCATCCACGATCGGGGCATGCTCTGGTGTGTGCCGTGGGCGGGGTGATGG
TGTGTGCTTCTGCAAGCCTTTGTGGCGATCGGCAACTCGGCTCTTGCGAC
GTTTTTCCTATAATACATACACGTACAAACACGGCGAAGACTTGA
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