mRNA_P-littoralis_Contig1028.9.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1028.9.1
Unique NamemRNA_P-littoralis_Contig1028.9.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig1028.9.1 vs. uniprot
Match: D8LP44_ECTSI (EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP44_ECTSI)

HSP 1 Score: 163 bits (413), Expect = 2.280e-45
Identity = 90/222 (40.54%), Postives = 128/222 (57.66%), Query Frame = 1
Query:    1 HVAGGAGFCEGIVTLIDAGAIIDSRLNTGWTPLYLAACRGHLDAVKIFLRKK------------------------------------CAHEGDAVALEGAANMNHPGIVSLLCDFGVIDTDGSSLCAAVDGRAEACMKLLVRRRGGHVDIDACAYVNIANDLNSLLLYTLELGRVYAPRFARYLPDQGVDTTSKVQFQVGSMPKLSDTLLMAATLTLRHAE 558
            H+A G GFC+G+V LIDAGA +DSR++ G T +Y+AAC G+LDAVKI L+++                                    C+ EG   ALE AA  NH  I++ L D GV DTDG++LC A++GR+EAC+KLLV RRGG+  +    Y N  +  ++ L+     GR YAPR  R+L D G DT  KV+F++  + +++   L+AA + LRH +
Sbjct:  119 HLATGEGFCDGMVALIDAGANVDSRMSNGSTAMYIAACTGNLDAVKILLQERANPMLCVGPTHPLDIATHGGHLGVVQELVQRFGVDGCSDEGAIGALETAAYENHQTILTFLLDAGVKDTDGTALCDAIEGRSEACLKLLVGRRGGNAHMAESHYTNTDSACDNALVCAFGAGRGYAPRMTRFLLDHGADTKKKVRFEIKGLGEIAGGPLVAAKIILRHEQ 340          
BLAST of mRNA_P-littoralis_Contig1028.9.1 vs. uniprot
Match: A0A6H5KSL5_9PHAE (Uncharacterized protein n=2 Tax=root TaxID=1 RepID=A0A6H5KSL5_9PHAE)

HSP 1 Score: 127 bits (319), Expect = 1.440e-31
Identity = 80/191 (41.88%), Postives = 109/191 (57.07%), Query Frame = 1
Query:    1 HVAGGAGFCEGIVTLIDAGAIIDSRLNTGWT-PLYLAACRGHLDAVKIFLRK----KCAHEGDAVALEGAANMNHPGIVSLLCDFGVIDTDGSSLCAAVDGRAEACMKLLVRRRGGHVDIDACAYVNIANDLNSLLLYTLELGRVYAPRFARYLPDQGVDTTSKVQFQVGSMPKLSDTLLMAATLTLRHAE 558
            ++A   G  E +  L    A  +  L  G T PL +A   GHL  V+  +++     CA EG   ALE AA  NH  I++ L D GVIDTDG++LC A++GR EAC+KLLV RRGG   +    Y NI N   + LL     GR +APR  R+L D G DT +KV+F +  + ++ D  L+AA +TLRH +
Sbjct:  165 YIAACLGNLEAVEILFQKKA--NPLLRVGPTHPLDIATHGGHLGVVQELVQRFGIDGCADEGAIGALETAAYENHEAIMTFLLDAGVIDTDGTALCDAIEGRNEACLKLLVSRRGGSEHMVERNYTNIDNARENPLLCAFGTGRGHAPRITRFLLDHGADTKNKVRFGIEGLGEMIDEPLVAAKITLRHEQ 353          
BLAST of mRNA_P-littoralis_Contig1028.9.1 vs. uniprot
Match: A0A6H5K5A5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5A5_9PHAE)

HSP 1 Score: 128 bits (321), Expect = 7.290e-31
Identity = 68/144 (47.22%), Postives = 91/144 (63.19%), Query Frame = 1
Query:    1 HVAGGAGFCEGIVTLIDAGAIIDSRLNTGWTPLYLAACRGHLDAVKIFLRKKCAHEGDAVALEGAANMNHPGIVSLLCDFGVIDTDGSSLCAAVDGRAEACMKLLVRRRGGHVDIDACAYVNIANDLNSLLLYTLELGRVYAPR 432
            H+A G  F E    L+ AGA ++ RL  G TPLYL+AC G L AV+I +R K      ++ ++    +    + +LLCD G +DTDG++ CAAV+GRA  C+KLLVRRRGG+V IDACAYVNIA   +SL+   +  G    PR
Sbjct:   50 HLAAGGAFGEITTALVGAGANVNCRLKNGATPLYLSACCGRLGAVRILIRGKA---NPSLPMDMNLPLLRQLVWALLCDSGAVDTDGTACCAAVEGRATECVKLLVRRRGGYVGIDACAYVNIAKGQDSLIHLQIRRGHCCTPR 190          
BLAST of mRNA_P-littoralis_Contig1028.9.1 vs. uniprot
Match: A0A6H5JL58_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL58_9PHAE)

HSP 1 Score: 104 bits (260), Expect = 1.020e-22
Identity = 69/193 (35.75%), Postives = 103/193 (53.37%), Query Frame = 1
Query:    1 HVAGGAGFCEGIVTLIDAGAIIDSRLNTGWTPLYLAACRGHLDAVKIFLRKKC-----AHEGDAVALEGAANMNH-------------PGIVSLLCDFGVIDTDGSSLCAAVDGRAEACMKLLVRRRGGHVDIDACAYVNIANDLNSLLLYT------------LELGRVYAPRFARYLPDQGVDTTSKVQFQ 489
            HVA   GF +G+V LI AGA +DS      TPLY++A +G L+ V+I +  K      A++G+++ L+ AA   H               IV+ L D G +D +G +LCAAV+GR E C+KLL+       +    AY N+A+D ++L +Y+             ELG  Y+PR  R L D G D  S+V+++
Sbjct:  109 HVAAAKGFHKGMVMLIHAGANVDSEQEGRATPLYISARQGRLEDVRILVGAKVNPLLPAYDGESLPLDAAAENGHLEVVRELVQRFGIDDIVTFLFDNGAVDAEGIALCAAVEGRREECIKLLL------ANTSTRAYANMAHD-STLPMYSNQLFQDTPLVSAFELGGFYSPRITRLLLDAGADVASRVRYE 294          
BLAST of mRNA_P-littoralis_Contig1028.9.1 vs. uniprot
Match: A0A6H5JNS0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNS0_9PHAE)

HSP 1 Score: 97.1 bits (240), Expect = 2.070e-20
Identity = 74/207 (35.75%), Postives = 107/207 (51.69%), Query Frame = 1
Query:    1 HVAGGAGFCEGIVTLIDAGA--IIDSRLNTGWT-------PLYLAACRGHLDAVKIFLRK----KCAHEGDAVALEGAANMNHPGIVSLLCDFGVIDTDGSSLCAAVDGRAEACMKLLVRRRGGHVDIDACAYVNIANDL------NSL-----LLYTLELGRVYAPRFARYLPDQGVDTTSKVQFQ-VGSMPKLSDTLLMAATLTL 546
            HVA   GF +G+V LI AG    + ++ N           PL +AA  G L  V+   ++     C+ +G A AL  AA+ N   IV+ L D GV+D +G +LCAAV+GR E C++LL+R +G + +  A AY N+ +D       N L     L+   ELG  Y+PR  R L   G D  S+V+++ +     + DT L  A  TL
Sbjct:  108 HVAAAKGFHKGMVMLIHAGVKGFVGAKANPILAAYDGESLPLDVAAENGQLGVVRELEQRFGIDGCSCDGGAQALVEAASQNQVDIVTFLFDNGVVDAEGIALCAAVEGRREECIELLLRTQGCNANAIARAYANMTHDTTLPMYSNQLFPDTPLVSAFELGGFYSPRITRLLLGAGADVASRVRYEGIEGDCVMHDTPLTIAESTL 314          
BLAST of mRNA_P-littoralis_Contig1028.9.1 vs. uniprot
Match: A0A6H5K1W5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1W5_9PHAE)

HSP 1 Score: 93.6 bits (231), Expect = 7.700e-19
Identity = 57/148 (38.51%), Postives = 86/148 (58.11%), Query Frame = 1
Query:   94 PLYLAACRGHLDAVKIFLRK----KCAHEGDAVALEGAANMNHPGIVSLLCDFGVIDTDGSSLCAAVDGRAEACMKLLVRRRGGHVDIDACAYVNIANDLNSLLLYT------------LELGRVYAPRFARYLPDQGVDTTSKVQFQ 489
            PL  AA  G+L  V+  +++     C+ +G A AL  AA+ N   IV+ L D GV+D +G +LCAAV+GR E  +KLL+RR+G + +    AY N+A+D ++L +Y+             ELG  Y+PR  R L D G D  S+V+++
Sbjct:  152 PLDAAAENGYLGVVRELVQRFGIDGCSRDGGAQALVEAASQNQTDIVTFLFDNGVVDAEGIALCAAVEGRREEFVKLLLRRQGCNANTSTRAYANMAHD-STLPMYSNQLFQDTPLVSAFELGGFYSPRITRLLLDAGADVASRVRYE 298          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1028.9.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D8LP44_ECTSI2.280e-4540.54EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A6H5KSL5_9PHAE1.440e-3141.88Uncharacterized protein n=2 Tax=root TaxID=1 RepID... [more]
A0A6H5K5A5_9PHAE7.290e-3147.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JL58_9PHAE1.020e-2235.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JNS0_9PHAE2.070e-2035.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K1W5_9PHAE7.700e-1938.51Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1028contigP-littoralis_Contig1028:45477..46034 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog654926.Q8QNQ8_ESV1K
Model size558
Max annot lvl10239|Viruses
Hectar predicted targeting categoryother localisation
GOsGO:0008150,GO:0010941,GO:0016032,GO:0019048,GO:0019050,GO:0019054,GO:0033668,GO:0035821,GO:0039526,GO:0042981,GO:0043067,GO:0043069,GO:0044003,GO:0044068,GO:0044403,GO:0044419,GO:0044531,GO:0044532,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051701,GO:0051704,GO:0051817,GO:0052040,GO:0052041,GO:0052150,GO:0052248,GO:0052433,GO:0052490,GO:0060548,GO:0065007
Exons1
Evalue1.3e-48
EggNOG OGs4QB1T@10239|Viruses,4QUVA@35237|dsDNA viruses no RNA stage
Descriptionaspartic-type endopeptidase activity
Cds size558
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789365.483413-CDS-P-littoralis_Contig1028:45476..460341680789365.483413-CDS-P-littoralis_Contig1028:45476..46034Pylaiella littoralis U1_48CDSP-littoralis_Contig1028 45477..46034 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1028.9.1prot_P-littoralis_Contig1028.9.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1028 45477..46034 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1028.9.1

>prot_P-littoralis_Contig1028.9.1 ID=prot_P-littoralis_Contig1028.9.1|Name=mRNA_P-littoralis_Contig1028.9.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=186bp
HVAGGAGFCEGIVTLIDAGAIIDSRLNTGWTPLYLAACRGHLDAVKIFLR
KKCAHEGDAVALEGAANMNHPGIVSLLCDFGVIDTDGSSLCAAVDGRAEA
CMKLLVRRRGGHVDIDACAYVNIANDLNSLLLYTLELGRVYAPRFARYLP
DQGVDTTSKVQFQVGSMPKLSDTLLMAATLTLRHAE
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mRNA from alignment at P-littoralis_Contig1028:45477..46034+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1028.9.1 ID=mRNA_P-littoralis_Contig1028.9.1|Name=mRNA_P-littoralis_Contig1028.9.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=558bp|location=Sequence derived from alignment at P-littoralis_Contig1028:45477..46034+ (Pylaiella littoralis U1_48)
CACGTCGCCGGGGGGGCAGGATTTTGCGAAGGCATTGTGACCTTGATCGA CGCCGGCGCAATAATTGACAGTCGCCTGAACACCGGATGGACTCCCCTGT ACCTTGCGGCGTGCCGTGGTCACCTTGACGCCGTAAAAATCTTCCTTCGA AAAAAGTGCGCGCACGAAGGAGACGCGGTGGCTCTCGAAGGGGCCGCGAA CATGAACCATCCGGGCATCGTGAGTCTCCTCTGTGACTTTGGGGTGATAG ACACGGATGGATCATCCTTGTGTGCCGCCGTCGACGGTCGTGCCGAAGCG TGTATGAAGCTGTTGGTGAGGAGGCGGGGAGGACACGTGGATATCGATGC TTGTGCGTATGTCAACATCGCCAACGATCTGAACAGTCTTCTACTCTACA CGCTAGAGCTTGGACGCGTTTATGCCCCCAGATTCGCGAGGTATTTGCCC GATCAGGGGGTCGATACAACATCAAAAGTTCAATTCCAAGTCGGATCTAT GCCGAAGCTTTCTGATACACTCCTGATGGCCGCCACACTGACTCTCCGTC ACGCGGAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig1028:45477..46034+

>mRNA_P-littoralis_Contig1028.9.1 ID=mRNA_P-littoralis_Contig1028.9.1|Name=mRNA_P-littoralis_Contig1028.9.1|organism=Pylaiella littoralis U1_48|type=CDS|length=558bp|location=Sequence derived from alignment at P-littoralis_Contig1028:45477..46034+ (Pylaiella littoralis U1_48)
CACGTCGCCGGGGGGGCAGGATTTTGCGAAGGCATTGTGACCTTGATCGA
CGCCGGCGCAATAATTGACAGTCGCCTGAACACCGGATGGACTCCCCTGT
ACCTTGCGGCGTGCCGTGGTCACCTTGACGCCGTAAAAATCTTCCTTCGA
AAAAAGTGCGCGCACGAAGGAGACGCGGTGGCTCTCGAAGGGGCCGCGAA
CATGAACCATCCGGGCATCGTGAGTCTCCTCTGTGACTTTGGGGTGATAG
ACACGGATGGATCATCCTTGTGTGCCGCCGTCGACGGTCGTGCCGAAGCG
TGTATGAAGCTGTTGGTGAGGAGGCGGGGAGGACACGTGGATATCGATGC
TTGTGCGTATGTCAACATCGCCAACGATCTGAACAGTCTTCTACTCTACA
CGCTAGAGCTTGGACGCGTTTATGCCCCCAGATTCGCGAGGTATTTGCCC
GATCAGGGGGTCGATACAACATCAAAAGTTCAATTCCAAGTCGGATCTAT
GCCGAAGCTTTCTGATACACTCCTGATGGCCGCCACACTGACTCTCCGTC
ACGCGGAA
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