mRNA_P-littoralis_Contig1028.9.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig1028.9.1 vs. uniprot
Match: D8LP44_ECTSI (EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP44_ECTSI) HSP 1 Score: 163 bits (413), Expect = 2.280e-45 Identity = 90/222 (40.54%), Postives = 128/222 (57.66%), Query Frame = 1
Query: 1 HVAGGAGFCEGIVTLIDAGAIIDSRLNTGWTPLYLAACRGHLDAVKIFLRKK------------------------------------CAHEGDAVALEGAANMNHPGIVSLLCDFGVIDTDGSSLCAAVDGRAEACMKLLVRRRGGHVDIDACAYVNIANDLNSLLLYTLELGRVYAPRFARYLPDQGVDTTSKVQFQVGSMPKLSDTLLMAATLTLRHAE 558
H+A G GFC+G+V LIDAGA +DSR++ G T +Y+AAC G+LDAVKI L+++ C+ EG ALE AA NH I++ L D GV DTDG++LC A++GR+EAC+KLLV RRGG+ + Y N + ++ L+ GR YAPR R+L D G DT KV+F++ + +++ L+AA + LRH +
Sbjct: 119 HLATGEGFCDGMVALIDAGANVDSRMSNGSTAMYIAACTGNLDAVKILLQERANPMLCVGPTHPLDIATHGGHLGVVQELVQRFGVDGCSDEGAIGALETAAYENHQTILTFLLDAGVKDTDGTALCDAIEGRSEACLKLLVGRRGGNAHMAESHYTNTDSACDNALVCAFGAGRGYAPRMTRFLLDHGADTKKKVRFEIKGLGEIAGGPLVAAKIILRHEQ 340
BLAST of mRNA_P-littoralis_Contig1028.9.1 vs. uniprot
Match: A0A6H5KSL5_9PHAE (Uncharacterized protein n=2 Tax=root TaxID=1 RepID=A0A6H5KSL5_9PHAE) HSP 1 Score: 127 bits (319), Expect = 1.440e-31 Identity = 80/191 (41.88%), Postives = 109/191 (57.07%), Query Frame = 1
Query: 1 HVAGGAGFCEGIVTLIDAGAIIDSRLNTGWT-PLYLAACRGHLDAVKIFLRK----KCAHEGDAVALEGAANMNHPGIVSLLCDFGVIDTDGSSLCAAVDGRAEACMKLLVRRRGGHVDIDACAYVNIANDLNSLLLYTLELGRVYAPRFARYLPDQGVDTTSKVQFQVGSMPKLSDTLLMAATLTLRHAE 558
++A G E + L A + L G T PL +A GHL V+ +++ CA EG ALE AA NH I++ L D GVIDTDG++LC A++GR EAC+KLLV RRGG + Y NI N + LL GR +APR R+L D G DT +KV+F + + ++ D L+AA +TLRH +
Sbjct: 165 YIAACLGNLEAVEILFQKKA--NPLLRVGPTHPLDIATHGGHLGVVQELVQRFGIDGCADEGAIGALETAAYENHEAIMTFLLDAGVIDTDGTALCDAIEGRNEACLKLLVSRRGGSEHMVERNYTNIDNARENPLLCAFGTGRGHAPRITRFLLDHGADTKNKVRFGIEGLGEMIDEPLVAAKITLRHEQ 353
BLAST of mRNA_P-littoralis_Contig1028.9.1 vs. uniprot
Match: A0A6H5K5A5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5A5_9PHAE) HSP 1 Score: 128 bits (321), Expect = 7.290e-31 Identity = 68/144 (47.22%), Postives = 91/144 (63.19%), Query Frame = 1
Query: 1 HVAGGAGFCEGIVTLIDAGAIIDSRLNTGWTPLYLAACRGHLDAVKIFLRKKCAHEGDAVALEGAANMNHPGIVSLLCDFGVIDTDGSSLCAAVDGRAEACMKLLVRRRGGHVDIDACAYVNIANDLNSLLLYTLELGRVYAPR 432
H+A G F E L+ AGA ++ RL G TPLYL+AC G L AV+I +R K ++ ++ + + +LLCD G +DTDG++ CAAV+GRA C+KLLVRRRGG+V IDACAYVNIA +SL+ + G PR
Sbjct: 50 HLAAGGAFGEITTALVGAGANVNCRLKNGATPLYLSACCGRLGAVRILIRGKA---NPSLPMDMNLPLLRQLVWALLCDSGAVDTDGTACCAAVEGRATECVKLLVRRRGGYVGIDACAYVNIAKGQDSLIHLQIRRGHCCTPR 190
BLAST of mRNA_P-littoralis_Contig1028.9.1 vs. uniprot
Match: A0A6H5JL58_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL58_9PHAE) HSP 1 Score: 104 bits (260), Expect = 1.020e-22 Identity = 69/193 (35.75%), Postives = 103/193 (53.37%), Query Frame = 1
Query: 1 HVAGGAGFCEGIVTLIDAGAIIDSRLNTGWTPLYLAACRGHLDAVKIFLRKKC-----AHEGDAVALEGAANMNH-------------PGIVSLLCDFGVIDTDGSSLCAAVDGRAEACMKLLVRRRGGHVDIDACAYVNIANDLNSLLLYT------------LELGRVYAPRFARYLPDQGVDTTSKVQFQ 489
HVA GF +G+V LI AGA +DS TPLY++A +G L+ V+I + K A++G+++ L+ AA H IV+ L D G +D +G +LCAAV+GR E C+KLL+ + AY N+A+D ++L +Y+ ELG Y+PR R L D G D S+V+++
Sbjct: 109 HVAAAKGFHKGMVMLIHAGANVDSEQEGRATPLYISARQGRLEDVRILVGAKVNPLLPAYDGESLPLDAAAENGHLEVVRELVQRFGIDDIVTFLFDNGAVDAEGIALCAAVEGRREECIKLLL------ANTSTRAYANMAHD-STLPMYSNQLFQDTPLVSAFELGGFYSPRITRLLLDAGADVASRVRYE 294
BLAST of mRNA_P-littoralis_Contig1028.9.1 vs. uniprot
Match: A0A6H5JNS0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNS0_9PHAE) HSP 1 Score: 97.1 bits (240), Expect = 2.070e-20 Identity = 74/207 (35.75%), Postives = 107/207 (51.69%), Query Frame = 1
Query: 1 HVAGGAGFCEGIVTLIDAGA--IIDSRLNTGWT-------PLYLAACRGHLDAVKIFLRK----KCAHEGDAVALEGAANMNHPGIVSLLCDFGVIDTDGSSLCAAVDGRAEACMKLLVRRRGGHVDIDACAYVNIANDL------NSL-----LLYTLELGRVYAPRFARYLPDQGVDTTSKVQFQ-VGSMPKLSDTLLMAATLTL 546
HVA GF +G+V LI AG + ++ N PL +AA G L V+ ++ C+ +G A AL AA+ N IV+ L D GV+D +G +LCAAV+GR E C++LL+R +G + + A AY N+ +D N L L+ ELG Y+PR R L G D S+V+++ + + DT L A TL
Sbjct: 108 HVAAAKGFHKGMVMLIHAGVKGFVGAKANPILAAYDGESLPLDVAAENGQLGVVRELEQRFGIDGCSCDGGAQALVEAASQNQVDIVTFLFDNGVVDAEGIALCAAVEGRREECIELLLRTQGCNANAIARAYANMTHDTTLPMYSNQLFPDTPLVSAFELGGFYSPRITRLLLGAGADVASRVRYEGIEGDCVMHDTPLTIAESTL 314
BLAST of mRNA_P-littoralis_Contig1028.9.1 vs. uniprot
Match: A0A6H5K1W5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1W5_9PHAE) HSP 1 Score: 93.6 bits (231), Expect = 7.700e-19 Identity = 57/148 (38.51%), Postives = 86/148 (58.11%), Query Frame = 1
Query: 94 PLYLAACRGHLDAVKIFLRK----KCAHEGDAVALEGAANMNHPGIVSLLCDFGVIDTDGSSLCAAVDGRAEACMKLLVRRRGGHVDIDACAYVNIANDLNSLLLYT------------LELGRVYAPRFARYLPDQGVDTTSKVQFQ 489
PL AA G+L V+ +++ C+ +G A AL AA+ N IV+ L D GV+D +G +LCAAV+GR E +KLL+RR+G + + AY N+A+D ++L +Y+ ELG Y+PR R L D G D S+V+++
Sbjct: 152 PLDAAAENGYLGVVRELVQRFGIDGCSRDGGAQALVEAASQNQTDIVTFLFDNGVVDAEGIALCAAVEGRREEFVKLLLRRQGCNANTSTRAYANMAHD-STLPMYSNQLFQDTPLVSAFELGGFYSPRITRLLLDAGADVASRVRYE 298 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1028.9.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig1028.9.1 >prot_P-littoralis_Contig1028.9.1 ID=prot_P-littoralis_Contig1028.9.1|Name=mRNA_P-littoralis_Contig1028.9.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=186bp HVAGGAGFCEGIVTLIDAGAIIDSRLNTGWTPLYLAACRGHLDAVKIFLRback to top mRNA from alignment at P-littoralis_Contig1028:45477..46034+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig1028.9.1 ID=mRNA_P-littoralis_Contig1028.9.1|Name=mRNA_P-littoralis_Contig1028.9.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=558bp|location=Sequence derived from alignment at P-littoralis_Contig1028:45477..46034+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig1028:45477..46034+ >mRNA_P-littoralis_Contig1028.9.1 ID=mRNA_P-littoralis_Contig1028.9.1|Name=mRNA_P-littoralis_Contig1028.9.1|organism=Pylaiella littoralis U1_48|type=CDS|length=558bp|location=Sequence derived from alignment at P-littoralis_Contig1028:45477..46034+ (Pylaiella littoralis U1_48)back to top |