mRNA_P-littoralis_Contig1028.11.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig1028.11.1 vs. uniprot
Match: UPI0000161E54 (EsV-1-178/222 paralog 2 n=2 Tax=Ectocarpus siliculosus virus 1 TaxID=37665 RepID=UPI0000161E54) HSP 1 Score: 623 bits (1607), Expect = 5.290e-212 Identity = 316/402 (78.61%), Postives = 349/402 (86.82%), Query Frame = 1
Query: 1 MVKPSSDGSPRKKKKRREIQPRAFPEIIPGFLKTVGSLYPKEYLTASGNLPHKYKGTYCSQLFSRVRFEDKASQQLRTRTVSVGFLAATTQEKRDAFQSKIDEAVDHLSRERVLASLFANFVFMERLRDGSALPEPDRAFFKSCLSSCIKSKGGGSLNADFDRFSELTGLPRLVPPKKLNLDQQREHEASCMATSTSTRATHHTERRRISITRWFLRVRMSRGDLVYKKYATKIVNLAKKIIMELDGTPEHEQDLRENAREIDPGTDTDTIIEFARKEKEFSDRVRGDEKSAWTIKHLNWMFSTYVAESRRM*EEVVSRAHSSAPGEDNECRKKRYEFVKSELGEEFAYTPPKDTAVLPICSTGSVFIHIDMKTLKAWGLLHSNDAWWYKDVLRPFSKEANI 1206
MV+PSSDG+ KKKK ++I PRA P+ IPGFL+TV SLYP +YLTASGNLP KGTYC QLFSRVRF + SQQLRTRTVSVGF AATT EKRD FQSK+++AVDHLSRERVLASLFANFVFMERL++GSALPEPDRAFFKSCLSSCI S+GGGSLNADFDRFSE+TGL RLVPPK +NLDQQREHEA MAT+TSTRATHH E+RRISITRWFLR R+SRGDL KKYATK+ NLA+KII DGTPE Q LR +R IDPGTDT+ II+FA +EKEFSDR RGD KSA TIKHLNWMF+TYVAESRRM EE VSR+H APG+D CRKKR EF+K ELGEEF Y PPKDTAVLPICSTG+VFI+IDMKTL +WGLLHSNDAWWYKDVLRPFSKEAN+
Sbjct: 1 MVRPSSDGNSHKKKKHKKIPPRAPPKNIPGFLQTVASLYPNQYLTASGNLPKSCKGTYCCQLFSRVRFGKEVSQQLRTRTVSVGFRAATTDEKRDTFQSKVNDAVDHLSRERVLASLFANFVFMERLQNGSALPEPDRAFFKSCLSSCILSRGGGSLNADFDRFSEITGLTRLVPPKSMNLDQQREHEAQRMATATSTRATHHAEKRRISITRWFLRGRISRGDLDCKKYATKLYNLAEKIITNFDGTPEDTQKLRTMSRAIDPGTDTNIIIDFAWQEKEFSDRDRGDGKSAETIKHLNWMFNTYVAESRRMYEEAVSRSHLFAPGKDKACRKKRDEFMKHELGEEFTYAPPKDTAVLPICSTGAVFIYIDMKTLGSWGLLHSNDAWWYKDVLRPFSKEANV 402
BLAST of mRNA_P-littoralis_Contig1028.11.1 vs. uniprot
Match: Q6XLT6_9PHYC (FirrV-1-M1 n=1 Tax=Feldmannia irregularis virus a TaxID=231992 RepID=Q6XLT6_9PHYC) HSP 1 Score: 515 bits (1327), Expect = 8.710e-170 Identity = 266/374 (71.12%), Postives = 305/374 (81.55%), Query Frame = 1
Query: 85 PGFLKTVGSLYPKEYLTASGNLPHKYKGTYCSQLFSRVRFEDKASQQLRTRTVSVGFLAATTQEKRDAFQSKIDEAVDHLSRERVLASLFANFVFMERLRDGSALPEPDRAFFKSCLSSCIKSKGGGSLNADFDRFSELTGLPRLVPPKKLNLDQQREHEASCMATSTSTRATHHTERRRISITRWFLRVRMSRGDLVYKKYATKIVNLAKKIIMELDGTPEHEQDLRENAREIDPGTDTDTIIEFARKEKEFSDRVRGDEKSAWTIKHLNWMFSTYVAESRRM*EEVVSRAHSSAPGEDNECRKKRYEFVKSELGEEFAYTPPKDTAVLPICSTGSVFIHIDMKTLKAWGLLHSNDAWWYKDVLRPFSKEANI 1206
P FL+TVG LYP++ LTASGNLP KYKG+YC+QLFSRVRF + SQ+LR RTVSVGFLAAT R+ FQSK++EAVDHLSRERVLASLF+NFV+MERLRDGS LPEPD FF SCLSSCI+SKGG SLNADFDRFS LTGL RLVPPK LNL QQR+ EA+ MATSTSTRATHH+E+RRISITRWFL R+S G+ K YATK+ LAKKII + +GT E +Q LRE A+ +D G D + IIEFA KEKEFSD ++K A TI HL+WMF TYV+ESRR EEV+SRAHS PGE+ E KKR EF+K ELG PP+DT+VLPICSTGSVFIH+DMKTLK+WGL HSNDAWWYK+VLRPFS+EANI
Sbjct: 39 PPFLETVGKLYPQQCLTASGNLPRKYKGSYCAQLFSRVRFGNAVSQKLRRRTVSVGFLAATMDSTRETFQSKVNEAVDHLSRERVLASLFSNFVYMERLRDGSTLPEPDVKFFGSCLSSCIRSKGG-SLNADFDRFSSLTGLSRLVPPKHLNLGQQRQFEANQMATSTSTRATHHSEKRRISITRWFLWERISGGNSRPKDYATKLFILAKKIITDFEGTEEQKQKLREMAKALDSGMDPEPIIEFALKEKEFSDNFSANQKCAPTIAHLDWMFKTYVSESRRKYEEVLSRAHSLFPGEEKEISKKRNEFMKRELGRGDIIAPPRDTSVLPICSTGSVFIHVDMKTLKSWGLFHSNDAWWYKNVLRPFSREANI 411
BLAST of mRNA_P-littoralis_Contig1028.11.1 vs. uniprot
Match: UPI0000161E53 (EsV-1-178/222 paralog 1 n=1 Tax=Ectocarpus siliculosus virus 1 TaxID=37665 RepID=UPI0000161E53) HSP 1 Score: 445 bits (1145), Expect = 3.850e-145 Identity = 222/279 (79.57%), Postives = 244/279 (87.46%), Query Frame = 1
Query: 370 MERLRDGSALPEPDRAFFKSCLSSCIKSKGGGSLNADFDRFSELTGLPRLVPPKKLNLDQQREHEASCMATSTSTRATHHTERRRISITRWFLRVRMSRGDLVYKKYATKIVNLAKKIIMELDGTPEHEQDLRENAREIDPGTDTDTIIEFARKEKEFSDRVRGDEKSAWTIKHLNWMFSTYVAESRRM*EEVVSRAHSSAPGEDNECRKKRYEFVKSELGEEFAYTPPKDTAVLPICSTGSVFIHIDMKTLKAWGLLHSNDAWWYKDVLRPFSKEANI 1206
MERL++GSALPEPDRAFFKSCLSSCI S+GGGSLNADFDRFSE+TGL RLVPPK +NLDQQREHEA MAT+TSTRATHH E+RRISITRWFLR R+SRGDL KKYATK+ NLA+KII DGTPE Q LR +R IDPGTDT+ II+FA +EK+FSDR RGD KSA TIKHLNWMF+TYVAESRRM EE VSR+H APG+D CRKKR EFVK ELGEEF Y PPKDTAVLPICSTG+VFI+IDMKTL +WGLLHSNDAWWYKDVLRPFSKEAN+
Sbjct: 1 MERLQNGSALPEPDRAFFKSCLSSCILSRGGGSLNADFDRFSEITGLTRLVPPKSMNLDQQREHEAQRMATATSTRATHHAEKRRISITRWFLRGRISRGDLDCKKYATKLYNLAEKIITNFDGTPEDTQKLRTMSRAIDPGTDTNIIIDFAWQEKKFSDRDRGDGKSAETIKHLNWMFNTYVAESRRMYEEAVSRSHLFAPGKDKACRKKRDEFVKHELGEEFTYAPPKDTAVLPICSTGAVFIYIDMKTLGSWGLLHSNDAWWYKDVLRPFSKEANV 279
BLAST of mRNA_P-littoralis_Contig1028.11.1 vs. uniprot
Match: A0A6H5JA56_9PHAE (DDE_Tnp_1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA56_9PHAE) HSP 1 Score: 288 bits (736), Expect = 2.210e-82 Identity = 184/358 (51.40%), Postives = 219/358 (61.17%), Query Frame = 2
Query: 1169 RMFSDRSPRKLISMRKKNAKYASSERGFLSSLLESGPDKCPWMIGESFLTDGVQIKLLLVTGTH-EESIPWVKSAERGGVQQAASGRCSARKPIGRGKRCVQHQERSGVSKHQKRP--RGDVRGPGTG*GDQRFFGYGRNLGEEGSRGNSQELDVRVRG*LSQGHSCITFGQVRDFQAQEPTVRSGHRSSEKREEKNF------LSHD---------VYSYCKSW*ANGAALFRETLQKGRKLMRFDRFRATQKTLAKIADKYMGHVGDTCRVMLFGKASFPSFRAQKGRASAPRKAMIREMASRGVVLMVDEYNTSKKCPGCKADTVEDKERRIRSCTNFKVGSPEESCRLHRLTPE 2188
R FS + K ++ K+N++YASSE G+LSSLL SGPDKCPWMIGESFLTDGVQIKLLLVT H ++ P G + + G+ +S P R DV G + S ++ + G + +C+ FG D++ RS + +R+++ + L ++ YCKSW ANGAAL ETLQ+ RK +RFDRFRATQKTLAKIADKYMGHVGD CRVMLFGKASF RAQKGRASAPRKA+IREMASRGVVLMV+EYNTSKKCPGC DTVEDKERRIRSC NFK+GSPEESCRLH LTPE
Sbjct: 433 RPFSKEANIKCLA-NKENSRYASSEHGYLSSLLGSGPDKCPWMIGESFLTDGVQIKLLLVTLEHGRKAFPGSTQLNEAGYNKLPRADVQLESLLREGRGVYN------ISSLLDSPSIREDVVVMSADPGQAKVINV--------SSATARTWARQDPGVILNSSTCV-FGD--DYRRDTLASRSDKYETFRRKDQPYGVAIDRLRNEKKRTSCLATFIRYCKSWCANGAALLLETLQEARKFLRFDRFRATQKTLAKIADKYMGHVGDPCRVMLFGKASF---RAQKGRASAPRKALIREMASRGVVLMVEEYNTSKKCPGCGEDTVEDKERRIRSCKNFKIGSPEESCRLHPLTPE 769
BLAST of mRNA_P-littoralis_Contig1028.11.1 vs. uniprot
Match: A0A6H5K772_9PHAE (DDE_Tnp_1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K772_9PHAE) HSP 1 Score: 241 bits (614), Expect = 1.710e-65 Identity = 121/141 (85.82%), Postives = 130/141 (92.20%), Query Frame = 3
Query: 1350 LEHMRKAFPGSSQLNEAGYNKLPRADAQLESLLDEGRGVYNIKSVLESASIRNDLVVMSADPGQAKVINVSSATAETWAKRDPEAILKSSTCVFGDDYRRDTLASRSDKYETFRRKNQPYGVAIDRLRNEKKRTSCLTTFI 1772
L+H RKAF GSS+LNEAGYNKLPRA+AQLESLL EGRGVYNI S+LES SIR D+VVMSADPGQAKVINVSSATA TWAK+DP ILK+STCVFGDDYRRDTLASRSD+YETFRRK+QPYGVAIDRL NEKKRTSCL TFI
Sbjct: 557 LDHGRKAFSGSSELNEAGYNKLPRANAQLESLLKEGRGVYNISSLLESTSIREDVVVMSADPGQAKVINVSSATASTWAKQDPGVILKTSTCVFGDDYRRDTLASRSDEYETFRRKDQPYGVAIDRLSNEKKRTSCLATFI 697
BLAST of mRNA_P-littoralis_Contig1028.11.1 vs. uniprot
Match: D8LP46_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP46_ECTSI) HSP 1 Score: 115 bits (287), Expect = 8.570e-23 Identity = 57/67 (85.07%), Postives = 61/67 (91.04%), Query Frame = 3
Query: 1350 LEHMRKAFPGSSQLNEAGYNKLPRADAQLESLLDEGRGVYNIKSVLESASIRNDLVVMSADPGQAKV 1550
LEH RKAF GSS+LNEAGYNKLPRADAQLESLL EGRGVYNI S+LES SIR D++VMSADPGQAKV
Sbjct: 654 LEHGRKAFSGSSELNEAGYNKLPRADAQLESLLKEGRGVYNISSLLESTSIREDVIVMSADPGQAKV 720
BLAST of mRNA_P-littoralis_Contig1028.11.1 vs. uniprot
Match: A0A836CHM9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHM9_9STRA) HSP 1 Score: 99.0 bits (245), Expect = 1.030e-17 Identity = 90/322 (27.95%), Postives = 149/322 (46.27%), Query Frame = 1
Query: 283 DAFQSKIDEAVDHLSRERVLASLFANFVFMERLRDGSALPEPDRAFFKSCLSSCIKSKGGG-SLNADFDRFSELTGLPRLVPPKKLNLDQQREHEASCMATSTSTRATHHTERRRISITRWFLRVRMSRGDLVY--KKYATKIVNLAKKIIMELDGTPEHEQD----LRENAREIDPGTDTDTIIEFARKEKEFSDRVRGDEKSAWTIKHLNWMFSTYVAESRRM*EEVVSRAHSSAPG--EDNECRKKRYEFVKSELGEEFAYTPPKDTAVLPICSTGSVFIHIDMKTL-----KAWGLLHSNDAWWYKDVLRPFSKEANI 1206
D +K DH S+ RV ASL AN++F+ L++ LP + AFFK+CLS C + G ++ F FS TG+ P + E++A MA + T H RR ++ +W L+V++ RG + + K + ++ L ++ + E D LR+ + + D I + +F D+ S ++HL + Y+ E RR + + S A+++ P D+ ++ R + L F PPK + LPI + FI + K++ K + D WWYK ++ PFSK+ANI
Sbjct: 125 DTIINKFTAVSDHASKVRVNASLLANYIFIRALQEDDQLPVANAAFFKACLSCCRGAVTGCVAVKQRFVEFSAATGITAYQPMP--GTTRVFENQADDMAVAAKTFIKVHFNDRRQTLLKWGLKVKL-RGRVPFNQKVFERRVGELCSFVLSDRS-----EMDVMAALRDELQRLGFNNCFDDIEQLCCTVMDF---YGSDDPSK--LRHLLELQEMYLTEDRRQYDSICSEAYTAFPKLQPDDTNKEARQALLDQWL---FYEAPPKIMSPLPINHNAATFIRLCRKSICELFPKLNVCIEDGDPWWYKVIMDPFSKDANI 430
BLAST of mRNA_P-littoralis_Contig1028.11.1 vs. uniprot
Match: Q8QNA9_ESV1K (EsV-1-178 n=3 Tax=root TaxID=1 RepID=Q8QNA9_ESV1K) HSP 1 Score: 84.0 bits (206), Expect = 5.020e-13 Identity = 64/192 (33.33%), Postives = 90/192 (46.88%), Query Frame = 2
Query: 1658 CITFGQVRD------FQAQEPTVRSGHRSSEKREEKNFLSHDVY---------------------SYCKSW*ANGAALFRETLQKGRKLMRFDRFRATQKTLAKIADKYMGHVGDTCRVMLFGKASFPSFRAQKGRASAPRKAMIREMASRGVVLMVDEYNTSKKCPGCKADTVEDKE--RRIRSCTNFKVG 2146
C G VR+ + E + +SG E RE+K S+D Y +YC+ +F E +++ RK RF R QKT+ K+A D ++LFG SF RA+KG ASAPRK ++R + SR V M+DE+ TSK CPG + D + +R+R CT VG
Sbjct: 459 CRCVGSVREKSTDWEMKGTEYSAKSGRTMLEGREKKR-RSNDEYGRCFPRFSAVKKKTARKSSFVAYCRVAAETFKVMFAEKMKRARKRSRFHSSRLVQKTVDKLASSMAACPSDRKNIVLFGNGSF---RAKKGHASAPRKKLVRAICSRVNVGMLDEFRTSKMCPGGCGGEMTDVQGGQRVRQCTTVSVG 646
BLAST of mRNA_P-littoralis_Contig1028.11.1 vs. uniprot
Match: A0A835YVY1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVY1_9STRA) HSP 1 Score: 82.8 bits (203), Expect = 1.270e-12 Identity = 96/325 (29.54%), Postives = 134/325 (41.23%), Query Frame = 2
Query: 1283 KCPWMIGESFLTDGVQIKLLLVTGTHEES-IPWVKSAERGGVQQAASGRCSARK--PIGRGKRCVQHQERSGVSKHQKRPRGDVRG---PGTG*GDQRFFGYGRNLGEEGSRGNSQELDVRVRG*LSQGHSCITFGQVRDFQAQEPTVRSGHRSSEKREEKNFLSHDVY---------------------SYCKSW*ANGAALFRETLQKGRKLMRFDRFRATQKTLAKIADKYMGHVGDTCR-VMLFGKASFPSFRAQKGRASAPRKAMIREMASRGVVLMVDEYNTSKKCPGCKADTVEDKERRIRSCTNFKVGSPEESCRLH 2173
+CP + SFLTDGVQ+KL LVT + P + + G + S + R+ IGRG V+ +S D+ G G LGEE R N+ L ++ R F + + SE++EEK + Y +YC+ W LF E LQ R+ F R+ A Q+ +A +AD + R V+ FG ASF +A+ G ASAPRK +IRE VV++V E TS CPGC+ +T+E+ R TN V C LH
Sbjct: 444 RCPLFVDASFLTDGVQVKLHLVTSALDNGGAPGLWGLAKAGYRALGSTPRTMREIIDIGRGVYNVEAITSESLS--------DLDGVIISAFDPGQVEIVSGVEALGEEWRRPNAAAL--------------MSTATRRGFAGDRYREDTLAKLSEEKEEKRRRDNGAYGGALDALTGQRRRTSALAEYAAYCRVWAQESPHLFEELLQDTRRHHTFRRYSAVQRAVAAVADDMVPVEERGKRHVVFFGAASF---QAKSGCASAPRKKIIRECCQHFVVVVVGEAYTSITCPGCRRETIEEGYRNRTCITNPGVAGT--ICPLH 741
BLAST of mRNA_P-littoralis_Contig1028.11.1 vs. uniprot
Match: A0A6H5L4M4_9PHAE (Resolvase/invertase-type recombinase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4M4_9PHAE) HSP 1 Score: 82.0 bits (201), Expect = 2.890e-12 Identity = 61/178 (34.27%), Postives = 86/178 (48.31%), Query Frame = 2
Query: 1682 DFQAQEPTVRSGHRSSEKREEKNFLSHDVY---------------------SYCKSW*ANGAALFRETLQKGRKLMRFDRFRATQKTLAKIADKYMGHVGDTCRVMLFGKASFPSFRAQKGRASAPRKAMIREMASRGVVLMVDEYNTSKKCPGCKADTVEDKE--RRIRSCTNFKVG 2146
+ + E +V+SG E RE+K S+D Y +YC+ +F E +++ RK RF R QKT+ K+A D ++LFG SF RA KG ASAPRK ++R + SR V M+DE+ TSK CPG + D + +R+R CT VG
Sbjct: 1100 EMKGTEYSVKSGRTMLEGREKKR-RSNDEYGRCFPRFSAVKKKTARKSSFLAYCRVAAETFKVMFAEKMKRARKRSRFHSSRLVQKTVDKLASNIAACPSDRKNIVLFGNGSF---RAMKGHASAPRKKLVRAICSRVNVGMLDEFRTSKMCPGGCGGEMTDVQGGQRVRQCTTVCVG 1273 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1028.11.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 14
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig1028.11.1 >prot_P-littoralis_Contig1028.11.1 ID=prot_P-littoralis_Contig1028.11.1|Name=mRNA_P-littoralis_Contig1028.11.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=313bp MVKPSSDGSPRKKKKRREIQPRAFPEIIPGFLKTVGSLYPKEYLTASGNLback to top mRNA from alignment at P-littoralis_Contig1028:47785..49988+ Legend: CDSpolypeptideUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig1028.11.1 ID=mRNA_P-littoralis_Contig1028.11.1|Name=mRNA_P-littoralis_Contig1028.11.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2204bp|location=Sequence derived from alignment at P-littoralis_Contig1028:47785..49988+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig1028:47785..49988+ >mRNA_P-littoralis_Contig1028.11.1 ID=mRNA_P-littoralis_Contig1028.11.1|Name=mRNA_P-littoralis_Contig1028.11.1|organism=Pylaiella littoralis U1_48|type=CDS|length=939bp|location=Sequence derived from alignment at P-littoralis_Contig1028:47785..49988+ (Pylaiella littoralis U1_48)back to top |