mRNA_P-littoralis_Contig1028.11.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1028.11.1
Unique NamemRNA_P-littoralis_Contig1028.11.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig1028.11.1 vs. uniprot
Match: UPI0000161E54 (EsV-1-178/222 paralog 2 n=2 Tax=Ectocarpus siliculosus virus 1 TaxID=37665 RepID=UPI0000161E54)

HSP 1 Score: 623 bits (1607), Expect = 5.290e-212
Identity = 316/402 (78.61%), Postives = 349/402 (86.82%), Query Frame = 1
Query:    1 MVKPSSDGSPRKKKKRREIQPRAFPEIIPGFLKTVGSLYPKEYLTASGNLPHKYKGTYCSQLFSRVRFEDKASQQLRTRTVSVGFLAATTQEKRDAFQSKIDEAVDHLSRERVLASLFANFVFMERLRDGSALPEPDRAFFKSCLSSCIKSKGGGSLNADFDRFSELTGLPRLVPPKKLNLDQQREHEASCMATSTSTRATHHTERRRISITRWFLRVRMSRGDLVYKKYATKIVNLAKKIIMELDGTPEHEQDLRENAREIDPGTDTDTIIEFARKEKEFSDRVRGDEKSAWTIKHLNWMFSTYVAESRRM*EEVVSRAHSSAPGEDNECRKKRYEFVKSELGEEFAYTPPKDTAVLPICSTGSVFIHIDMKTLKAWGLLHSNDAWWYKDVLRPFSKEANI 1206
            MV+PSSDG+  KKKK ++I PRA P+ IPGFL+TV SLYP +YLTASGNLP   KGTYC QLFSRVRF  + SQQLRTRTVSVGF AATT EKRD FQSK+++AVDHLSRERVLASLFANFVFMERL++GSALPEPDRAFFKSCLSSCI S+GGGSLNADFDRFSE+TGL RLVPPK +NLDQQREHEA  MAT+TSTRATHH E+RRISITRWFLR R+SRGDL  KKYATK+ NLA+KII   DGTPE  Q LR  +R IDPGTDT+ II+FA +EKEFSDR RGD KSA TIKHLNWMF+TYVAESRRM EE VSR+H  APG+D  CRKKR EF+K ELGEEF Y PPKDTAVLPICSTG+VFI+IDMKTL +WGLLHSNDAWWYKDVLRPFSKEAN+
Sbjct:    1 MVRPSSDGNSHKKKKHKKIPPRAPPKNIPGFLQTVASLYPNQYLTASGNLPKSCKGTYCCQLFSRVRFGKEVSQQLRTRTVSVGFRAATTDEKRDTFQSKVNDAVDHLSRERVLASLFANFVFMERLQNGSALPEPDRAFFKSCLSSCILSRGGGSLNADFDRFSEITGLTRLVPPKSMNLDQQREHEAQRMATATSTRATHHAEKRRISITRWFLRGRISRGDLDCKKYATKLYNLAEKIITNFDGTPEDTQKLRTMSRAIDPGTDTNIIIDFAWQEKEFSDRDRGDGKSAETIKHLNWMFNTYVAESRRMYEEAVSRSHLFAPGKDKACRKKRDEFMKHELGEEFTYAPPKDTAVLPICSTGAVFIYIDMKTLGSWGLLHSNDAWWYKDVLRPFSKEANV 402          
BLAST of mRNA_P-littoralis_Contig1028.11.1 vs. uniprot
Match: Q6XLT6_9PHYC (FirrV-1-M1 n=1 Tax=Feldmannia irregularis virus a TaxID=231992 RepID=Q6XLT6_9PHYC)

HSP 1 Score: 515 bits (1327), Expect = 8.710e-170
Identity = 266/374 (71.12%), Postives = 305/374 (81.55%), Query Frame = 1
Query:   85 PGFLKTVGSLYPKEYLTASGNLPHKYKGTYCSQLFSRVRFEDKASQQLRTRTVSVGFLAATTQEKRDAFQSKIDEAVDHLSRERVLASLFANFVFMERLRDGSALPEPDRAFFKSCLSSCIKSKGGGSLNADFDRFSELTGLPRLVPPKKLNLDQQREHEASCMATSTSTRATHHTERRRISITRWFLRVRMSRGDLVYKKYATKIVNLAKKIIMELDGTPEHEQDLRENAREIDPGTDTDTIIEFARKEKEFSDRVRGDEKSAWTIKHLNWMFSTYVAESRRM*EEVVSRAHSSAPGEDNECRKKRYEFVKSELGEEFAYTPPKDTAVLPICSTGSVFIHIDMKTLKAWGLLHSNDAWWYKDVLRPFSKEANI 1206
            P FL+TVG LYP++ LTASGNLP KYKG+YC+QLFSRVRF +  SQ+LR RTVSVGFLAAT    R+ FQSK++EAVDHLSRERVLASLF+NFV+MERLRDGS LPEPD  FF SCLSSCI+SKGG SLNADFDRFS LTGL RLVPPK LNL QQR+ EA+ MATSTSTRATHH+E+RRISITRWFL  R+S G+   K YATK+  LAKKII + +GT E +Q LRE A+ +D G D + IIEFA KEKEFSD    ++K A TI HL+WMF TYV+ESRR  EEV+SRAHS  PGE+ E  KKR EF+K ELG      PP+DT+VLPICSTGSVFIH+DMKTLK+WGL HSNDAWWYK+VLRPFS+EANI
Sbjct:   39 PPFLETVGKLYPQQCLTASGNLPRKYKGSYCAQLFSRVRFGNAVSQKLRRRTVSVGFLAATMDSTRETFQSKVNEAVDHLSRERVLASLFSNFVYMERLRDGSTLPEPDVKFFGSCLSSCIRSKGG-SLNADFDRFSSLTGLSRLVPPKHLNLGQQRQFEANQMATSTSTRATHHSEKRRISITRWFLWERISGGNSRPKDYATKLFILAKKIITDFEGTEEQKQKLREMAKALDSGMDPEPIIEFALKEKEFSDNFSANQKCAPTIAHLDWMFKTYVSESRRKYEEVLSRAHSLFPGEEKEISKKRNEFMKRELGRGDIIAPPRDTSVLPICSTGSVFIHVDMKTLKSWGLFHSNDAWWYKNVLRPFSREANI 411          
BLAST of mRNA_P-littoralis_Contig1028.11.1 vs. uniprot
Match: UPI0000161E53 (EsV-1-178/222 paralog 1 n=1 Tax=Ectocarpus siliculosus virus 1 TaxID=37665 RepID=UPI0000161E53)

HSP 1 Score: 445 bits (1145), Expect = 3.850e-145
Identity = 222/279 (79.57%), Postives = 244/279 (87.46%), Query Frame = 1
Query:  370 MERLRDGSALPEPDRAFFKSCLSSCIKSKGGGSLNADFDRFSELTGLPRLVPPKKLNLDQQREHEASCMATSTSTRATHHTERRRISITRWFLRVRMSRGDLVYKKYATKIVNLAKKIIMELDGTPEHEQDLRENAREIDPGTDTDTIIEFARKEKEFSDRVRGDEKSAWTIKHLNWMFSTYVAESRRM*EEVVSRAHSSAPGEDNECRKKRYEFVKSELGEEFAYTPPKDTAVLPICSTGSVFIHIDMKTLKAWGLLHSNDAWWYKDVLRPFSKEANI 1206
            MERL++GSALPEPDRAFFKSCLSSCI S+GGGSLNADFDRFSE+TGL RLVPPK +NLDQQREHEA  MAT+TSTRATHH E+RRISITRWFLR R+SRGDL  KKYATK+ NLA+KII   DGTPE  Q LR  +R IDPGTDT+ II+FA +EK+FSDR RGD KSA TIKHLNWMF+TYVAESRRM EE VSR+H  APG+D  CRKKR EFVK ELGEEF Y PPKDTAVLPICSTG+VFI+IDMKTL +WGLLHSNDAWWYKDVLRPFSKEAN+
Sbjct:    1 MERLQNGSALPEPDRAFFKSCLSSCILSRGGGSLNADFDRFSEITGLTRLVPPKSMNLDQQREHEAQRMATATSTRATHHAEKRRISITRWFLRGRISRGDLDCKKYATKLYNLAEKIITNFDGTPEDTQKLRTMSRAIDPGTDTNIIIDFAWQEKKFSDRDRGDGKSAETIKHLNWMFNTYVAESRRMYEEAVSRSHLFAPGKDKACRKKRDEFVKHELGEEFTYAPPKDTAVLPICSTGAVFIYIDMKTLGSWGLLHSNDAWWYKDVLRPFSKEANV 279          
BLAST of mRNA_P-littoralis_Contig1028.11.1 vs. uniprot
Match: A0A6H5JA56_9PHAE (DDE_Tnp_1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA56_9PHAE)

HSP 1 Score: 288 bits (736), Expect = 2.210e-82
Identity = 184/358 (51.40%), Postives = 219/358 (61.17%), Query Frame = 2
Query: 1169 RMFSDRSPRKLISMRKKNAKYASSERGFLSSLLESGPDKCPWMIGESFLTDGVQIKLLLVTGTH-EESIPWVKSAERGGVQQAASGRCSARKPIGRGKRCVQHQERSGVSKHQKRP--RGDVRGPGTG*GDQRFFGYGRNLGEEGSRGNSQELDVRVRG*LSQGHSCITFGQVRDFQAQEPTVRSGHRSSEKREEKNF------LSHD---------VYSYCKSW*ANGAALFRETLQKGRKLMRFDRFRATQKTLAKIADKYMGHVGDTCRVMLFGKASFPSFRAQKGRASAPRKAMIREMASRGVVLMVDEYNTSKKCPGCKADTVEDKERRIRSCTNFKVGSPEESCRLHRLTPE 2188
            R FS  +  K ++  K+N++YASSE G+LSSLL SGPDKCPWMIGESFLTDGVQIKLLLVT  H  ++ P        G  +           +  G+          +S     P  R DV       G  +            S   ++    +  G +    +C+ FG   D++      RS    + +R+++ +      L ++            YCKSW ANGAAL  ETLQ+ RK +RFDRFRATQKTLAKIADKYMGHVGD CRVMLFGKASF   RAQKGRASAPRKA+IREMASRGVVLMV+EYNTSKKCPGC  DTVEDKERRIRSC NFK+GSPEESCRLH LTPE
Sbjct:  433 RPFSKEANIKCLA-NKENSRYASSEHGYLSSLLGSGPDKCPWMIGESFLTDGVQIKLLLVTLEHGRKAFPGSTQLNEAGYNKLPRADVQLESLLREGRGVYN------ISSLLDSPSIREDVVVMSADPGQAKVINV--------SSATARTWARQDPGVILNSSTCV-FGD--DYRRDTLASRSDKYETFRRKDQPYGVAIDRLRNEKKRTSCLATFIRYCKSWCANGAALLLETLQEARKFLRFDRFRATQKTLAKIADKYMGHVGDPCRVMLFGKASF---RAQKGRASAPRKALIREMASRGVVLMVEEYNTSKKCPGCGEDTVEDKERRIRSCKNFKIGSPEESCRLHPLTPE 769          
BLAST of mRNA_P-littoralis_Contig1028.11.1 vs. uniprot
Match: A0A6H5K772_9PHAE (DDE_Tnp_1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K772_9PHAE)

HSP 1 Score: 241 bits (614), Expect = 1.710e-65
Identity = 121/141 (85.82%), Postives = 130/141 (92.20%), Query Frame = 3
Query: 1350 LEHMRKAFPGSSQLNEAGYNKLPRADAQLESLLDEGRGVYNIKSVLESASIRNDLVVMSADPGQAKVINVSSATAETWAKRDPEAILKSSTCVFGDDYRRDTLASRSDKYETFRRKNQPYGVAIDRLRNEKKRTSCLTTFI 1772
            L+H RKAF GSS+LNEAGYNKLPRA+AQLESLL EGRGVYNI S+LES SIR D+VVMSADPGQAKVINVSSATA TWAK+DP  ILK+STCVFGDDYRRDTLASRSD+YETFRRK+QPYGVAIDRL NEKKRTSCL TFI
Sbjct:  557 LDHGRKAFSGSSELNEAGYNKLPRANAQLESLLKEGRGVYNISSLLESTSIREDVVVMSADPGQAKVINVSSATASTWAKQDPGVILKTSTCVFGDDYRRDTLASRSDEYETFRRKDQPYGVAIDRLSNEKKRTSCLATFI 697          
BLAST of mRNA_P-littoralis_Contig1028.11.1 vs. uniprot
Match: D8LP46_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP46_ECTSI)

HSP 1 Score: 115 bits (287), Expect = 8.570e-23
Identity = 57/67 (85.07%), Postives = 61/67 (91.04%), Query Frame = 3
Query: 1350 LEHMRKAFPGSSQLNEAGYNKLPRADAQLESLLDEGRGVYNIKSVLESASIRNDLVVMSADPGQAKV 1550
            LEH RKAF GSS+LNEAGYNKLPRADAQLESLL EGRGVYNI S+LES SIR D++VMSADPGQAKV
Sbjct:  654 LEHGRKAFSGSSELNEAGYNKLPRADAQLESLLKEGRGVYNISSLLESTSIREDVIVMSADPGQAKV 720          
BLAST of mRNA_P-littoralis_Contig1028.11.1 vs. uniprot
Match: A0A836CHM9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHM9_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 1.030e-17
Identity = 90/322 (27.95%), Postives = 149/322 (46.27%), Query Frame = 1
Query:  283 DAFQSKIDEAVDHLSRERVLASLFANFVFMERLRDGSALPEPDRAFFKSCLSSCIKSKGGG-SLNADFDRFSELTGLPRLVPPKKLNLDQQREHEASCMATSTSTRATHHTERRRISITRWFLRVRMSRGDLVY--KKYATKIVNLAKKIIMELDGTPEHEQD----LRENAREIDPGTDTDTIIEFARKEKEFSDRVRGDEKSAWTIKHLNWMFSTYVAESRRM*EEVVSRAHSSAPG--EDNECRKKRYEFVKSELGEEFAYTPPKDTAVLPICSTGSVFIHIDMKTL-----KAWGLLHSNDAWWYKDVLRPFSKEANI 1206
            D   +K     DH S+ RV ASL AN++F+  L++   LP  + AFFK+CLS C  +  G  ++   F  FS  TG+    P       +  E++A  MA +  T    H   RR ++ +W L+V++ RG + +  K +  ++  L   ++ +       E D    LR+  + +      D I +      +F      D+ S   ++HL  +   Y+ E RR  + + S A+++ P    D+  ++ R   +   L   F   PPK  + LPI    + FI +  K++     K    +   D WWYK ++ PFSK+ANI
Sbjct:  125 DTIINKFTAVSDHASKVRVNASLLANYIFIRALQEDDQLPVANAAFFKACLSCCRGAVTGCVAVKQRFVEFSAATGITAYQPMP--GTTRVFENQADDMAVAAKTFIKVHFNDRRQTLLKWGLKVKL-RGRVPFNQKVFERRVGELCSFVLSDRS-----EMDVMAALRDELQRLGFNNCFDDIEQLCCTVMDF---YGSDDPSK--LRHLLELQEMYLTEDRRQYDSICSEAYTAFPKLQPDDTNKEARQALLDQWL---FYEAPPKIMSPLPINHNAATFIRLCRKSICELFPKLNVCIEDGDPWWYKVIMDPFSKDANI 430          
BLAST of mRNA_P-littoralis_Contig1028.11.1 vs. uniprot
Match: Q8QNA9_ESV1K (EsV-1-178 n=3 Tax=root TaxID=1 RepID=Q8QNA9_ESV1K)

HSP 1 Score: 84.0 bits (206), Expect = 5.020e-13
Identity = 64/192 (33.33%), Postives = 90/192 (46.88%), Query Frame = 2
Query: 1658 CITFGQVRD------FQAQEPTVRSGHRSSEKREEKNFLSHDVY---------------------SYCKSW*ANGAALFRETLQKGRKLMRFDRFRATQKTLAKIADKYMGHVGDTCRVMLFGKASFPSFRAQKGRASAPRKAMIREMASRGVVLMVDEYNTSKKCPGCKADTVEDKE--RRIRSCTNFKVG 2146
            C   G VR+       +  E + +SG    E RE+K   S+D Y                     +YC+        +F E +++ RK  RF   R  QKT+ K+A        D   ++LFG  SF   RA+KG ASAPRK ++R + SR  V M+DE+ TSK CPG     + D +  +R+R CT   VG
Sbjct:  459 CRCVGSVREKSTDWEMKGTEYSAKSGRTMLEGREKKR-RSNDEYGRCFPRFSAVKKKTARKSSFVAYCRVAAETFKVMFAEKMKRARKRSRFHSSRLVQKTVDKLASSMAACPSDRKNIVLFGNGSF---RAKKGHASAPRKKLVRAICSRVNVGMLDEFRTSKMCPGGCGGEMTDVQGGQRVRQCTTVSVG 646          
BLAST of mRNA_P-littoralis_Contig1028.11.1 vs. uniprot
Match: A0A835YVY1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVY1_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 1.270e-12
Identity = 96/325 (29.54%), Postives = 134/325 (41.23%), Query Frame = 2
Query: 1283 KCPWMIGESFLTDGVQIKLLLVTGTHEES-IPWVKSAERGGVQQAASGRCSARK--PIGRGKRCVQHQERSGVSKHQKRPRGDVRG---PGTG*GDQRFFGYGRNLGEEGSRGNSQELDVRVRG*LSQGHSCITFGQVRDFQAQEPTVRSGHRSSEKREEKNFLSHDVY---------------------SYCKSW*ANGAALFRETLQKGRKLMRFDRFRATQKTLAKIADKYMGHVGDTCR-VMLFGKASFPSFRAQKGRASAPRKAMIREMASRGVVLMVDEYNTSKKCPGCKADTVEDKERRIRSCTNFKVGSPEESCRLH 2173
            +CP  +  SFLTDGVQ+KL LVT   +    P +    + G +   S   + R+   IGRG   V+      +S        D+ G        G          LGEE  R N+  L              ++    R F        +  + SE++EEK    +  Y                     +YC+ W      LF E LQ  R+   F R+ A Q+ +A +AD  +       R V+ FG ASF   +A+ G ASAPRK +IRE     VV++V E  TS  CPGC+ +T+E+  R     TN  V      C LH
Sbjct:  444 RCPLFVDASFLTDGVQVKLHLVTSALDNGGAPGLWGLAKAGYRALGSTPRTMREIIDIGRGVYNVEAITSESLS--------DLDGVIISAFDPGQVEIVSGVEALGEEWRRPNAAAL--------------MSTATRRGFAGDRYREDTLAKLSEEKEEKRRRDNGAYGGALDALTGQRRRTSALAEYAAYCRVWAQESPHLFEELLQDTRRHHTFRRYSAVQRAVAAVADDMVPVEERGKRHVVFFGAASF---QAKSGCASAPRKKIIRECCQHFVVVVVGEAYTSITCPGCRRETIEEGYRNRTCITNPGVAGT--ICPLH 741          
BLAST of mRNA_P-littoralis_Contig1028.11.1 vs. uniprot
Match: A0A6H5L4M4_9PHAE (Resolvase/invertase-type recombinase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4M4_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 2.890e-12
Identity = 61/178 (34.27%), Postives = 86/178 (48.31%), Query Frame = 2
Query: 1682 DFQAQEPTVRSGHRSSEKREEKNFLSHDVY---------------------SYCKSW*ANGAALFRETLQKGRKLMRFDRFRATQKTLAKIADKYMGHVGDTCRVMLFGKASFPSFRAQKGRASAPRKAMIREMASRGVVLMVDEYNTSKKCPGCKADTVEDKE--RRIRSCTNFKVG 2146
            + +  E +V+SG    E RE+K   S+D Y                     +YC+        +F E +++ RK  RF   R  QKT+ K+A        D   ++LFG  SF   RA KG ASAPRK ++R + SR  V M+DE+ TSK CPG     + D +  +R+R CT   VG
Sbjct: 1100 EMKGTEYSVKSGRTMLEGREKKR-RSNDEYGRCFPRFSAVKKKTARKSSFLAYCRVAAETFKVMFAEKMKRARKRSRFHSSRLVQKTVDKLASNIAACPSDRKNIVLFGNGSF---RAMKGHASAPRKKLVRAICSRVNVGMLDEFRTSKMCPGGCGGEMTDVQGGQRVRQCTTVCVG 1273          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1028.11.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
UPI0000161E545.290e-21278.61EsV-1-178/222 paralog 2 n=2 Tax=Ectocarpus silicul... [more]
Q6XLT6_9PHYC8.710e-17071.12FirrV-1-M1 n=1 Tax=Feldmannia irregularis virus a ... [more]
UPI0000161E533.850e-14579.57EsV-1-178/222 paralog 1 n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JA56_9PHAE2.210e-8251.40DDE_Tnp_1 domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5K772_9PHAE1.710e-6585.82DDE_Tnp_1 domain-containing protein n=1 Tax=Ectoca... [more]
D8LP46_ECTSI8.570e-2385.07Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CHM9_9STRA1.030e-1727.95Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
Q8QNA9_ESV1K5.020e-1333.33EsV-1-178 n=3 Tax=root TaxID=1 RepID=Q8QNA9_ESV1K[more]
A0A835YVY1_9STRA1.270e-1229.54Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6H5L4M4_9PHAE2.890e-1234.27Resolvase/invertase-type recombinase catalytic dom... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1028contigP-littoralis_Contig1028:47785..49988 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2188
Hectar predicted targeting categoryother localisation
Exons2
Cds size939
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789365.5562418-CDS-P-littoralis_Contig1028:47784..487231680789365.5562418-CDS-P-littoralis_Contig1028:47784..48723Pylaiella littoralis U1_48CDSP-littoralis_Contig1028 47785..48723 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789365.565164-UTR-P-littoralis_Contig1028:48723..497421680789365.565164-UTR-P-littoralis_Contig1028:48723..49742Pylaiella littoralis U1_48UTRP-littoralis_Contig1028 48724..49742 +
1680789365.5739248-UTR-P-littoralis_Contig1028:49758..499881680789365.5739248-UTR-P-littoralis_Contig1028:49758..49988Pylaiella littoralis U1_48UTRP-littoralis_Contig1028 49759..49988 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1028.11.1prot_P-littoralis_Contig1028.11.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1028 47785..48723 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1028.11.1

>prot_P-littoralis_Contig1028.11.1 ID=prot_P-littoralis_Contig1028.11.1|Name=mRNA_P-littoralis_Contig1028.11.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=313bp
MVKPSSDGSPRKKKKRREIQPRAFPEIIPGFLKTVGSLYPKEYLTASGNL
PHKYKGTYCSQLFSRVRFEDKASQQLRTRTVSVGFLAATTQEKRDAFQSK
IDEAVDHLSRERVLASLFANFVFMERLRDGSALPEPDRAFFKSCLSSCIK
SKGGGSLNADFDRFSELTGLPRLVPPKKLNLDQQREHEASCMATSTSTRA
THHTERRRISITRWFLRVRMSRGDLVYKKYATKIVNLAKKIIMELDGTPE
HEQDLRENAREIDPGTDTDTIIEFARKEKEFSDRVRGDEKSAWTIKHLNW
MFSTYVAESRRM*
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mRNA from alignment at P-littoralis_Contig1028:47785..49988+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1028.11.1 ID=mRNA_P-littoralis_Contig1028.11.1|Name=mRNA_P-littoralis_Contig1028.11.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2204bp|location=Sequence derived from alignment at P-littoralis_Contig1028:47785..49988+ (Pylaiella littoralis U1_48)
ATGGTCAAGCCATCATCGGATGGAAGTCCGCGCAAAAAGAAGAAACGCAG AGAAATACAACCAAGGGCATTTCCCGAGATCATCCCGGGATTTTTGAAGA CGGTGGGAAGCCTCTACCCTAAAGAATACCTCACCGCATCAGGGAATCTA CCCCACAAGTACAAAGGCACCTACTGTTCACAGCTCTTTTCGAGAGTCAG GTTCGAGGACAAGGCGTCTCAACAACTTCGGACGAGGACTGTCAGCGTGG GGTTTCTGGCGGCGACGACACAGGAAAAACGCGACGCTTTCCAGTCCAAG ATCGACGAGGCGGTGGATCACCTCTCTCGTGAACGAGTGTTGGCGTCTCT TTTCGCGAATTTCGTGTTCATGGAACGCCTACGAGACGGATCAGCCCTCC CCGAACCTGACAGGGCCTTTTTCAAGTCGTGCTTGTCATCATGCATCAAG AGCAAAGGAGGCGGGAGCCTCAATGCTGACTTCGACCGTTTTTCAGAGCT GACGGGTCTGCCAAGACTCGTACCCCCTAAAAAGCTAAACCTTGACCAGC AACGAGAGCACGAGGCAAGTTGCATGGCGACATCAACGTCTACGCGTGCA ACACACCACACGGAAAGGAGGAGGATTTCGATCACGAGGTGGTTTCTGCG CGTGCGAATGTCCAGGGGTGACCTTGTCTACAAGAAGTACGCCACCAAGA TTGTCAACCTAGCGAAGAAGATCATCATGGAGCTTGACGGCACACCCGAG CACGAACAAGACCTTCGAGAAAACGCACGAGAGATAGACCCTGGTACAGA CACCGACACCATCATCGAGTTTGCTCGGAAAGAAAAGGAGTTCTCTGATC GAGTTCGTGGAGACGAAAAAAGCGCGTGGACGATCAAACACCTAAACTGG ATGTTCAGCACGTACGTCGCTGAGTCCAGACGCATGTAAGAGGAGGTCGT GTCTCGAGCCCATTCGTCTGCCCCGGGTGAAGACAATGAGTGTAGGAAGA AGAGGTACGAGTTTGTGAAGAGCGAGCTCGGAGAGGAGTTCGCTTACACT CCCCCCAAAGACACTGCCGTGCTACCCATTTGTTCCACGGGTTCGGTCTT CATCCACATCGACATGAAAACGCTCAAGGCCTGGGGACTTCTGCATTCCA ACGATGCCTGGTGGTACAAGGATGTTCTCCGACCGTTCTCCAAGGAAGCT AATATCAATGAGAAAGAAGAACGCCAAGTACGCGTCGAGCGAAAGGGGTT TTCTCTCAAGTCTGCTCGAAAGTGGTCCGGACAAGTGCCCTTGGATGATT GGCGAGAGTTTCCTGACGGACGGTGTTCAAATCAAGTTGCTTCTTGTGAC TGGAACACATGAGGAAAGCATTCCCTGGGTCAAGTCAGCTGAACGAGGCG GGGTACAACAAGCTGCCTCGGGCCGATGCTCAGCTAGAAAGCCTATTGGA CGAGGGAAGAGGTGTGTACAACATCAAGAGCGTTCTGGAGTCAGCAAGCA TCAGAAACGACCTCGTGGTGATGTCCGCGGACCCGGGACAGGCTAAGGTG ATCAACGTTTCTTCGGCTACGGCCGAAACTTGGGCGAAGAGGGATCCAGA GGCAATTCTCAAGAGCTCGACGTGCGTGTTCGGGGATGACTATCGCAGGG ACACTCTTGCATCACGTTCGGACAAGTACGAGACTTTCAGGCGCAAGAAC CAACCGTACGGAGTGGCCATCGATCGTCTGAGAAACGAGAAGAAAAGAAC TTCCTGTCTCACGACGTTTATTCATACTGCAAGAGTTGGTGAGCAAACGG AGCGGCGTTGTTCAGAGAGACTTTGCAAAAAGGGAGGAAGTTGATGCGGT TTGATCGTTTCAGGGCTACGCAAAAGACACTTGCTAAGATAGCGGACAAG TACATGGGACACGTGGGAGACACATGTAGGGTCATGTTGTTCGGCAAAGC TTCATTTCGTGCTCAGAAAGGAAGCTTCATTTCGTGCTCAGAAAGGGAGG GCTTCGGCTCCAAGGAAAGCCATGATAAGAGAGATGGCCAGCAGAGGGGT CGTGTTGATGGTGGACGAGTACAACACTTCCAAGAAGTGCCCGGGGTGTA AAGCGGACACAGTCGAGGACAAAGAACGGAGAATCCGGAGTTGCACAAAC TTTAAGGTCGGATCCCCGGAAGAGTCCTGTAGACTGCACCGTTTGACACC AGAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig1028:47785..49988+

>mRNA_P-littoralis_Contig1028.11.1 ID=mRNA_P-littoralis_Contig1028.11.1|Name=mRNA_P-littoralis_Contig1028.11.1|organism=Pylaiella littoralis U1_48|type=CDS|length=939bp|location=Sequence derived from alignment at P-littoralis_Contig1028:47785..49988+ (Pylaiella littoralis U1_48)
ATGGTCAAGCCATCATCGGATGGAAGTCCGCGCAAAAAGAAGAAACGCAG
AGAAATACAACCAAGGGCATTTCCCGAGATCATCCCGGGATTTTTGAAGA
CGGTGGGAAGCCTCTACCCTAAAGAATACCTCACCGCATCAGGGAATCTA
CCCCACAAGTACAAAGGCACCTACTGTTCACAGCTCTTTTCGAGAGTCAG
GTTCGAGGACAAGGCGTCTCAACAACTTCGGACGAGGACTGTCAGCGTGG
GGTTTCTGGCGGCGACGACACAGGAAAAACGCGACGCTTTCCAGTCCAAG
ATCGACGAGGCGGTGGATCACCTCTCTCGTGAACGAGTGTTGGCGTCTCT
TTTCGCGAATTTCGTGTTCATGGAACGCCTACGAGACGGATCAGCCCTCC
CCGAACCTGACAGGGCCTTTTTCAAGTCGTGCTTGTCATCATGCATCAAG
AGCAAAGGAGGCGGGAGCCTCAATGCTGACTTCGACCGTTTTTCAGAGCT
GACGGGTCTGCCAAGACTCGTACCCCCTAAAAAGCTAAACCTTGACCAGC
AACGAGAGCACGAGGCAAGTTGCATGGCGACATCAACGTCTACGCGTGCA
ACACACCACACGGAAAGGAGGAGGATTTCGATCACGAGGTGGTTTCTGCG
CGTGCGAATGTCCAGGGGTGACCTTGTCTACAAGAAGTACGCCACCAAGA
TTGTCAACCTAGCGAAGAAGATCATCATGGAGCTTGACGGCACACCCGAG
CACGAACAAGACCTTCGAGAAAACGCACGAGAGATAGACCCTGGTACAGA
CACCGACACCATCATCGAGTTTGCTCGGAAAGAAAAGGAGTTCTCTGATC
GAGTTCGTGGAGACGAAAAAAGCGCGTGGACGATCAAACACCTAAACTGG
ATGTTCAGCACGTACGTCGCTGAGTCCAGACGCATGTAA
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