mRNA_P-littoralis_Contig1025.33.1 (mRNA) Pylaiella littoralis U1_48
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig1025.33.1 vs. uniprot
Match: A0A6H5KIQ7_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIQ7_9PHAE) HSP 1 Score: 176 bits (447), Expect = 2.990e-48 Identity = 82/117 (70.09%), Postives = 94/117 (80.34%), Query Frame = 1 Query: 10 GVSDEEIARCVAEIATFLNGIGFTALNQDPPAQAGDPTVPIGEEARARGRQELERDMRSFDWDDIGECESQYKNLVNACMRHTRCGAYCLKNGRCQFGFPKPRRTRLTLEAHRLTTP 360
GVSDE+++R I++FL GIGFTALN +PP DP VP EEARARGR EL RD+R+FDWDD+GECE +YKNLVNACMRHTR G YCL NGRC+FGFPKPR+ L LEAH LTTP
Sbjct: 208 GVSDEDMSRVKDGISSFLCGIGFTALNLEPPPTPADPQVPTSEEARARGRDELARDLRAFDWDDVGECERRYKNLVNACMRHTRHGGYCLVNGRCRFGFPKPRQESLGLEAHPLTTP 324
BLAST of mRNA_P-littoralis_Contig1025.33.1 vs. uniprot
Match: A0A6H5KFJ0_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFJ0_9PHAE) HSP 1 Score: 175 bits (443), Expect = 1.190e-47 Identity = 81/117 (69.23%), Postives = 93/117 (79.49%), Query Frame = 1 Query: 10 GVSDEEIARCVAEIATFLNGIGFTALNQDPPAQAGDPTVPIGEEARARGRQELERDMRSFDWDDIGECESQYKNLVNACMRHTRCGAYCLKNGRCQFGFPKPRRTRLTLEAHRLTTP 360
GV DE+++R I++FL GIGFTALN +PP DP VP EEARARGR EL RD+R+FDWDD+GECE +YKNLVNACMRHTR G YCL NGRC+FGFPKPR+ L LEAH LTTP
Sbjct: 520 GVGDEDMSRVKDGISSFLCGIGFTALNLEPPPTPADPQVPTSEEARARGRDELARDLRAFDWDDVGECERRYKNLVNACMRHTRHGGYCLVNGRCRFGFPKPRQESLGLEAHPLTTP 636
BLAST of mRNA_P-littoralis_Contig1025.33.1 vs. uniprot
Match: A0A6H5KCP2_9PHAE (Helitron_like_N domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCP2_9PHAE) HSP 1 Score: 156 bits (395), Expect = 3.280e-41 Identity = 72/110 (65.45%), Postives = 85/110 (77.27%), Query Frame = 1 Query: 10 GVSDEEIARCVAEIATFLNGIGFTALNQDPPAQAGDPTVPIGEEARARGRQELERDMRSFDWDDIGECESQYKNLVNACMRHTRCGAYCLKNGRCQFGFPKPRRTRLTLE 339
GVSDE+++R I++FL GIGFTA+N +PP DP VP EEARARGR EL RD+R+FDWDD+GECE +YKNLVNACMRH R G CL NGRC+FGFPKPR+ L E
Sbjct: 808 GVSDEDMSRVKDGISSFLCGIGFTAVNLEPPPTPADPQVPTSEEARARGRDELARDLRAFDWDDVGECERRYKNLVNACMRHIRHGGCCLVNGRCRFGFPKPRQXELARE 917
BLAST of mRNA_P-littoralis_Contig1025.33.1 vs. uniprot
Match: A0A6H5K692_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K692_9PHAE) HSP 1 Score: 124 bits (312), Expect = 5.030e-30 Identity = 62/115 (53.91%), Postives = 74/115 (64.35%), Query Frame = 1 Query: 10 GVSDEEIARCVAEIATFLNGIGFTALNQDPPAQAGDPTVPIGEEARARGRQELERDMRSFDWDDIGECESQYKNLVNACMRHTRCGAYCLKNGRCQFGFPKPRRTRLTLEAHRLT 354
GV DE + R +I FL +GFTA N PA P+GEEA AR R+ELER MR F W D+ EC +Y NLVN RHT+CG YCL+NGRC+FGFPK R R+ L+ H LT
Sbjct: 662 GVPDEFV-RVQEDIVRFLEKVGFTARNPSLPAD----DTPVGEEACARSREELERYMRDFPWHDVDECRRRYANLVNGAQRHTKCGPYCLRNGRCRFGFPKKRDGRMRLDPHPLT 771
BLAST of mRNA_P-littoralis_Contig1025.33.1 vs. uniprot
Match: A0A6H5KVL0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVL0_9PHAE) HSP 1 Score: 65.9 bits (159), Expect = 1.480e-9 Identity = 29/38 (76.32%), Postives = 31/38 (81.58%), Query Frame = 1 Query: 247 MRHTRCGAYCLKNGRCQFGFPKPRRTRLTLEAHRLTTP 360
MRHTR G YCL NGRC+FGFPKPR+ L LEAH LTTP
Sbjct: 1 MRHTRHGGYCLVNGRCRFGFPKPRQESLGLEAHPLTTP 38 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1025.33.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 5 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig1025.33.1 >prot_P-littoralis_Contig1025.33.1 ID=prot_P-littoralis_Contig1025.33.1|Name=mRNA_P-littoralis_Contig1025.33.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=162bp RRRGVSDEEIARCVAEIATFLNGIGFTALNQDPPAQAGDPTVPIGEEARAback to top mRNA from alignment at P-littoralis_Contig1025:74098..74583+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig1025.33.1 ID=mRNA_P-littoralis_Contig1025.33.1|Name=mRNA_P-littoralis_Contig1025.33.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=486bp|location=Sequence derived from alignment at P-littoralis_Contig1025:74098..74583+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig1025:74098..74583+ >mRNA_P-littoralis_Contig1025.33.1 ID=mRNA_P-littoralis_Contig1025.33.1|Name=mRNA_P-littoralis_Contig1025.33.1|organism=Pylaiella littoralis U1_48|type=CDS|length=486bp|location=Sequence derived from alignment at P-littoralis_Contig1025:74098..74583+ (Pylaiella littoralis U1_48)back to top |