mRNA_P-littoralis_Contig1024.1.1 (mRNA) Pylaiella littoralis U1_48
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_P-littoralis_Contig1024.1.1 vs. uniprot
Match: A0A6H5JIB8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIB8_9PHAE) HSP 1 Score: 77.8 bits (190), Expect = 4.960e-13 Identity = 68/224 (30.36%), Postives = 111/224 (49.55%), Query Frame = 1 Query: 1 EVRAVIGDGSCGCHSTLVGIAGTTPGGVEPLLVYSGNPSLYKGSSKEVAGLYTDINEDTMSDVFGDSWEHEQDREVTVEEDNMLFRLSF--------TETSKPRTKVGQVKTRKTVREVAASVRKRSKY-WLAVCQMALVAAIEEKNIAVWEAKDGGGIRLYQNGHETGLFIGN-SEDIGEFVHLLYSN-GNCTISKLQDGTYPVRNSRVTSQATS--NHFDNI 633 +V V GDG C HS L++ S++ ++E+ D+ + ++ VF + +E D V+ EE L + + T ++ + + K KTVREV A + + ++ +LAV Q+ALVAA++ NI VW+A GGG+ + + G TG F+G+ D EF+HL+Y++ G + GT VRN ++ A + NHF I Sbjct: 39 KVLKVAGDGHCALHSIY-------------RLLHPERDSVFGALARELTQTRKDVALEMIAAVFSEDYEQLVDNTVSDEEMLRLGKFDYERGFHRKRTPSAGRAARAVRHKPLKTVREVVAGIEDQLEHDYLAVGQLALVAAVKRCNIVVWDATSGGGLLIVEVGDTTGCFVGDLCRD--EFLHLVYNDFGGYNPTTYAAGTTTVRNPSSSNVAETKFNHFSAI 247
BLAST of mRNA_P-littoralis_Contig1024.1.1 vs. uniprot
Match: A0A6H5K3B3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3B3_9PHAE) HSP 1 Score: 74.3 bits (181), Expect = 5.780e-12 Identity = 63/222 (28.38%), Postives = 103/222 (46.40%), Query Frame = 1 Query: 1 EVRAVIGDGSCGCHSTLVGIAGTTPGGVEPLLVYSGNPSLYKGSSKEVAGLYTDINEDTMSDVFGDSWEHEQDREVTVEEDNMLFRLSF--------TETSKPRTKVGQVKTRKTVREVAASVRKRSKY-WLAVCQMALVAAIEEKNIAVWEAKDGGGIRLYQNGHETGLFIGNSEDIGEFVHLLYSNGNCTISKLQDGTYPVRNSRVTSQATSNHFDNIWV 639 +V V GDG C H L++ S++ + E+ D+ + ++ VF + +E D+ V+ EE L +L + T ++ + K KTVREV A + + ++ +LA+ Q+ALVAA++ NI VWEAK GGG+R+ + G TG F+G+ LY + CT + S ++ T NHF I++ Sbjct: 16 KVLEVAGDGHCALHGIY-------------RLLHPERDSVFGALASEITQTRKDVGLEMITAVFSEDYEQLVDKTVSDEEMLRLGKLDYERGFYRKRTPSAGRAARAVGHKPLKTVREVVAGIEDQLEHDYLAIGQLALVAAVKRCNIVVWEAKTGGGLRIVEMGDTTGCFVGD----------LYQDEFCTWLRNPS-------SSNVAETTFNHFSAIFI 207
BLAST of mRNA_P-littoralis_Contig1024.1.1 vs. uniprot
Match: A0A6H5L3T1_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3T1_9PHAE) HSP 1 Score: 73.2 bits (178), Expect = 1.710e-11 Identity = 57/188 (30.32%), Postives = 94/188 (50.00%), Query Frame = 1 Query: 1 EVRAVIGDGSCGCHSTLVGIAGTTPGGVEPLLVYSGNPSLYKGSSKEVAGLYTDINEDTMSDVFGDSWEHEQDREVTVEEDNMLFRLSF--------TETSKPRTKVGQVKTRKTVREVAASVRKRSKY-WLAVCQMALVAAIEEKNIAVWEAKDGGGIRLYQNGHETGLFIGNSEDIGEFVHLLYSN 537 +V V GDG C H L++ S++ + E+ D+ + ++ VF +E D V+ EE L +L + T ++ + + K KTVREV A + + ++ +LAV Q+A+VAA++ NI VWEA GGG+R+ + G TG F+G+ EF+HL+Y++ Sbjct: 39 KVLEVAGDGHCALHCIY-------------RLLHPERDSVFGALASEITQTRKDVALEMIAAVFSKDYEQLVDNTVSDEEMLRLGKLDYERGFYRKRTPSAGRAARAVRRKPLKTVREVVAGIEDQLEHDYLAVGQLAIVAAVKRCNIVVWEATTGGGLRIVEMGDTTGCFVGDLYR-DEFLHLVYND 212
BLAST of mRNA_P-littoralis_Contig1024.1.1 vs. uniprot
Match: A0A6H5K8T4_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8T4_9PHAE) HSP 1 Score: 68.2 bits (165), Expect = 8.190e-10 Identity = 64/224 (28.57%), Postives = 106/224 (47.32%), Query Frame = 1 Query: 1 EVRAVIGDGSCGCHSTLVGIAGTTPGGVEPLLVYSGNPSLYKGSSKEVAGLYTDINEDTMSDVFGDSWEHEQDREVTVEEDNM-LFRLSF--------TETSKPRTKVGQVKTRKTVREVAASVRKRSKY-WLAVCQMALVAAIEEKNIAVWEAKDGGGIRLYQNGHETGLFIGNSEDIGEFVHLLYSN-GNCTISKLQDGTYPVRN--SRVTSQATSNHFDNI 633 +V V DG C H L++ S++ + E D+ + ++ VF + +E D V E+ + L +L + T ++ + K KT+R+V A + + ++ +LAV Q+ALVAA++ NIAVWEAK GGG+R+ + G TG+F+G+ E++HL+Y+ G + GT VR S ++ NH I Sbjct: 110 KVLEVASDGHCALHRIY-------------RLLHPERDSVFGALASETTQTRKDVVLEMIAAVFSEDYEQLVDNTVVSGEEMLRLGKLGYERGFYRKRTPSAGRAASAVRPKPLKTMRQVVAGIDDQLEHDYLAVGQLALVAAVKRCNIAVWEAKTGGGLRIVEIGDITGIFVGDLNR-DEYLHLVYNYFGGYKAATYAAGTATVRTPTSSNVAERKLNHLSAI 319 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1024.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig1024.1.1 >prot_P-littoralis_Contig1024.1.1 ID=prot_P-littoralis_Contig1024.1.1|Name=mRNA_P-littoralis_Contig1024.1.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=213bp EVRAVIGDGSCGCHSTLVGIAGTTPGGVEPLLVYSGNPSLYKGSSKEVAGback to top mRNA from alignment at P-littoralis_Contig1024:3659..4297+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig1024.1.1 ID=mRNA_P-littoralis_Contig1024.1.1|Name=mRNA_P-littoralis_Contig1024.1.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=639bp|location=Sequence derived from alignment at P-littoralis_Contig1024:3659..4297+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig1024:3659..4297+ >mRNA_P-littoralis_Contig1024.1.1 ID=mRNA_P-littoralis_Contig1024.1.1|Name=mRNA_P-littoralis_Contig1024.1.1|organism=Pylaiella littoralis U1_48|type=CDS|length=639bp|location=Sequence derived from alignment at P-littoralis_Contig1024:3659..4297+ (Pylaiella littoralis U1_48)back to top |