mRNA_P-littoralis_Contig1023.15.1 (mRNA) Pylaiella littoralis U1_48
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_P-littoralis_Contig1023.15.1 vs. uniprot
Match: D7FV02_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV02_ECTSI) HSP 1 Score: 80.9 bits (198), Expect = 1.830e-14 Identity = 50/136 (36.76%), Postives = 70/136 (51.47%), Query Frame = 2 Query: 197 EMPEGWLYPHLIMACAWSPWSGNTPSEWKNLCASGGKPEALKEEDK------------LDTGSNPLSSPAAMAXXXXXXXXXXXXXXXXXXXXTEAAAKAEADRLRRAQKDKENMALMKETEVTRKKGVAAME*IN 568 ++P+ + YP+L++AC WS WSGNTPSEWK+L AS G + DK + T NP+ SP AM A K E +++++ K+KEN+AL E TRK+G+AAME N Sbjct: 285 DIPDDYYYPYLLLACPWSSWSGNTPSEWKHLAASSGPRNRASKGDKGNSNGNDNSNEVVITDDNPIGSPRAMGLMNANGDAVSRRQYF-------ANIKKEKEQVKKDAKEKENVALRNEALDTRKRGLAAMESAN 413
BLAST of mRNA_P-littoralis_Contig1023.15.1 vs. uniprot
Match: A0A6H5KGF1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGF1_9PHAE) HSP 1 Score: 76.6 bits (187), Expect = 1.440e-13 Identity = 48/124 (38.71%), Postives = 65/124 (52.42%), Query Frame = 2 Query: 197 EMPEGWLYPHLIMACAWSPWSGNTPSEWKNLCASGGKPEALKEEDKLDTGSNPLSSPAAMAXXXXXXXXXXXXXXXXXXXXTEAAAKAEADRLRRAQKDKENMALMKETEVTRKKGVAAME*IN 568 E+PE W++P L++ A+SPWSG PSEWK+L +S G + K D NP+ SPA M+ AA K E ++ R+A DKE KET T+KKG+AA+E N Sbjct: 117 EVPEWWIFPFLLLTAAYSPWSGQAPSEWKHLDSSDGPSKKRKGGDVNVDSENPVCSPAVMSRLDPNGDALSRRQHF-------AAIKREKEQERKATADKELQESRKETLETKKKGLAALEAAN 233
BLAST of mRNA_P-littoralis_Contig1023.15.1 vs. uniprot
Match: A0A6H5JTM3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTM3_9PHAE) HSP 1 Score: 63.9 bits (154), Expect = 1.070e-8 Identity = 44/123 (35.77%), Postives = 60/123 (48.78%), Query Frame = 2 Query: 200 MPEGWLYPHLIMACAWSPWSGNTPSEWKNLCASGGKPEALKEEDKLDTGSNPLSSPAAMAXXXXXXXXXXXXXXXXXXXXTEAAAKAEADRLRRAQKDKENMALMKETEVTRKKGVAAME*IN 568 +PE W++P L++ A+SPWSG PSEWK+L +S G + K D NP+ SPA M+ AA K E ++ +A +KE KE T KKG+AA E N Sbjct: 137 VPEWWVFPFLLLTAAYSPWSGQAPSEWKHLDSSDGPSKKRKGADVTVDSENPVCSPAVMSRLNPNGDALSRRQHF-------AAIKREKEQEMKAAAEKELQEARKEPLET-KKGLAAFEAAN 251
BLAST of mRNA_P-littoralis_Contig1023.15.1 vs. uniprot
Match: A0A6H5KJW8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJW8_9PHAE) HSP 1 Score: 61.6 bits (148), Expect = 5.620e-8 Identity = 43/124 (34.68%), Postives = 59/124 (47.58%), Query Frame = 2 Query: 197 EMPEGWLYPHLIMACAWSPWSGNTPSEWKNLCASGGKPEALKEEDKLDTGSNPLSSPAAMAXXXXXXXXXXXXXXXXXXXXTEAAAKAEADRLRRAQKDKENMALMKETEVTRKKGVAAME*IN 568 E+PE W++P L++ A+SPWSG PSEWK+L +S G + D NP+ SPA M+ AA K E + R+A DKE + + KKG AA+E N Sbjct: 120 EVPEWWVFPFLLLTAAYSPWSGQAPSEWKHLDSSDGLSKKRTGGDVTVDSENPVYSPAVMSRLNPNGDALSRRQHF-------AAIKREKEEERKAAADKE-LQXXXXXALETKKGPAALEAAN 235
BLAST of mRNA_P-littoralis_Contig1023.15.1 vs. uniprot
Match: A0A6H5KDD8_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDD8_9PHAE) HSP 1 Score: 60.1 bits (144), Expect = 5.650e-8 Identity = 27/57 (47.37%), Postives = 36/57 (63.16%), Query Frame = 2 Query: 197 EMPEGWLYPHLIMACAWSPWSGNTPSEWKNLCASGGKPEALKEEDKLDTGSNPLSSP 367 E+PE W++P L++ A+SPWSG PSEWK+L +S G K D NP+SSP Sbjct: 117 EVPEWWVFPFLLLTAAYSPWSGQAPSEWKHLDSSDGPSIKRKGGDVTVDSDNPVSSP 173
BLAST of mRNA_P-littoralis_Contig1023.15.1 vs. uniprot
Match: A0A6H5K7S4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7S4_9PHAE) HSP 1 Score: 61.2 bits (147), Expect = 8.480e-8 Identity = 27/58 (46.55%), Postives = 37/58 (63.79%), Query Frame = 2 Query: 197 EMPEGWLYPHLIMACAWSPWSGNTPSEWKNLCASGGKPEALKEEDKLDTGSNPLSSPA 370 E+PE W++P L++ A+SPWSG PSEWK+L +S G + K D NP+ SPA Sbjct: 105 EVPEWWVFPFLLLTAAYSPWSGQAPSEWKHLDSSDGPSKKRKGGDVTVDSENPVCSPA 162
BLAST of mRNA_P-littoralis_Contig1023.15.1 vs. uniprot
Match: A0A6H5KVE3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVE3_9PHAE) HSP 1 Score: 57.4 bits (137), Expect = 3.120e-7 Identity = 27/61 (44.26%), Postives = 36/61 (59.02%), Query Frame = 2 Query: 197 EMPEGWLYPHLIMACAWSPWSGNTPSEWKNLCASGGKPEALKEEDKLDTGSNPLSSPAAMA 379 E+ E W++P L+ A+SPWSG PSEWK+L +S G K D NP+ SPA M+ Sbjct: 31 EVSEWWVFPFLLHTAAYSPWSGQAPSEWKHLDSSDGPSIKRKGGDVTVDSENPVCSPAVMS 91 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1023.15.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig1023.15.1 >prot_P-littoralis_Contig1023.15.1 ID=prot_P-littoralis_Contig1023.15.1|Name=mRNA_P-littoralis_Contig1023.15.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=121bp MPEGWLYPHLIMACAWSPWSGNTPSEWKNLCASGGKPEALKEEDKLDTGSback to top mRNA from alignment at P-littoralis_Contig1023:63956..64527- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig1023.15.1 ID=mRNA_P-littoralis_Contig1023.15.1|Name=mRNA_P-littoralis_Contig1023.15.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=572bp|location=Sequence derived from alignment at P-littoralis_Contig1023:63956..64527- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig1023:63956..64527- >mRNA_P-littoralis_Contig1023.15.1 ID=mRNA_P-littoralis_Contig1023.15.1|Name=mRNA_P-littoralis_Contig1023.15.1|organism=Pylaiella littoralis U1_48|type=CDS|length=363bp|location=Sequence derived from alignment at P-littoralis_Contig1023:63956..64527- (Pylaiella littoralis U1_48)back to top |