mRNA_P-littoralis_Contig1021.1.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1021.1.1
Unique NamemRNA_P-littoralis_Contig1021.1.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1021.1.1 vs. uniprot
Match: A0A6H5JT94_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT94_9PHAE)

HSP 1 Score: 119 bits (299), Expect = 2.460e-26
Identity = 55/80 (68.75%), Postives = 64/80 (80.00%), Query Frame = -1 
Query:  242 TSSGPIVRMKCGHNGCNATANPTETLPITCSNKTTPHVHKTYDMIPTLFAVLSANSTQNCGPKTPDGIPIPATFSIGTQV 481
            +SS PIVRMKCGHNGCNATANPT+ LP TCSNKT  +VH TYDM+ TLF V+  NS   CGP +PDG+PIP+T SI T+V
Sbjct:   80 SSSRPIVRMKCGHNGCNATANPTDALPTTCSNKTDRYVHNTYDMVRTLFTVIPMNSVHGCGPISPDGLPIPSTMSINTKV 159
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BLAST of mRNA_P-littoralis_Contig1021.1.1 vs. uniprot
Match: A0A6H5JHK4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHK4_9PHAE)

HSP 1 Score: 110 bits (275), Expect = 6.670e-26
Identity = 54/75 (72.00%), Postives = 58/75 (77.33%), Query Frame = 3 
Query:  255 MEKVAGMGMPSGVLGPQFWVEFAERTAKRVGIMSYVLWTCGVVLLEHVMGNVSVGLAVALQPLCPHFMRTMGPEE 479
            M+ V GMG  SG +GPQ W EF   T KRVG MSYVLWT G+VLLE VMG  SVGLAVALQPL P+FMRTMGPEE
Sbjct:    1 MDMVDGMGRLSGEMGPQSWAEFMGMTVKRVGTMSYVLWTWGLVLLEQVMGRASVGLAVALQPLWPYFMRTMGPEE 75
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BLAST of mRNA_P-littoralis_Contig1021.1.1 vs. uniprot
Match: A0A6H5L7M6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7M6_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 1.530e-15
Identity = 42/81 (51.85%), Postives = 56/81 (69.14%), Query Frame = -1 
Query:  245 TSSGPIVRMKC--GHNGCNATANPTETLPITCSNKTTPHVHKTYDMIPTLFAVLSANSTQNCGPKTPDGIPIPATFSIGTQ 481
            ++SGP+V M+C  G   CN+T+NP   LPI C+NK TPH+H+ YDMIP LFA +  +   +CG  T DGI IP+  SIGT+
Sbjct:    5 SASGPVVCMRCCLGTPECNSTSNPCAELPIACTNKITPHLHRDYDMIPKLFAAIQPHMAVDCGLHTKDGIQIPSAMSIGTK 85
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1021.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JT94_9PHAE2.460e-2668.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JHK4_9PHAE6.670e-2672.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L7M6_9PHAE1.530e-1551.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1021contigP-littoralis_Contig1021:7779..9300 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1504
Hectar predicted targeting categoryother localisation
Exons2
Cds size360
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789361.4652772-UTR-P-littoralis_Contig1021:7778..87311680789361.4652772-UTR-P-littoralis_Contig1021:7778..8731Pylaiella littoralis U1_48UTRP-littoralis_Contig1021 7779..8731 -
1680789361.4875555-UTR-P-littoralis_Contig1021:9091..91791680789361.4875555-UTR-P-littoralis_Contig1021:9091..9179Pylaiella littoralis U1_48UTRP-littoralis_Contig1021 9092..9179 -
1680789361.4960175-UTR-P-littoralis_Contig1021:9197..93001680789361.4960175-UTR-P-littoralis_Contig1021:9197..9300Pylaiella littoralis U1_48UTRP-littoralis_Contig1021 9198..9300 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789361.478314-CDS-P-littoralis_Contig1021:8731..90911680789361.478314-CDS-P-littoralis_Contig1021:8731..9091Pylaiella littoralis U1_48CDSP-littoralis_Contig1021 8732..9091 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1021.1.1prot_P-littoralis_Contig1021.1.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1021 8732..9091 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1021.1.1

>prot_P-littoralis_Contig1021.1.1 ID=prot_P-littoralis_Contig1021.1.1|Name=mRNA_P-littoralis_Contig1021.1.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=120bp
MLKTGVCVGTSGSLEVHTCVPMEKVAGMGMPSGVLGPQFWVEFAERTAKR
VGIMSYVLWTCGVVLLEHVMGNVSVGLAVALQPLCPHFMRTMGPEEVGLW
ILWQKAWHHNVGKGWRSLC*
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mRNA from alignment at P-littoralis_Contig1021:7779..9300-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1021.1.1 ID=mRNA_P-littoralis_Contig1021.1.1|Name=mRNA_P-littoralis_Contig1021.1.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1522bp|location=Sequence derived from alignment at P-littoralis_Contig1021:7779..9300- (Pylaiella littoralis U1_48)
GAACCACGCGGAGCGGGACTTCTGTTCGTCGGGGGTCAGGTGGACGTATT
CCTCGCCGTCGCAGATGAGGACCTCCTGGAGCACCTGTTACGGGCAAGGA
AAGGTAGAAGGGCAAGGAAAGGTAGAAGGGTGTGGAAAACGGGAGAAGGG
TTGGTGTTGATTAGTGAAAGATAGCGCTGTGAAATAGAAATGGGAAGCTG
GAACCAGAAATGTTAAAGACGGGTGTGTGTGTAGGAACGTCGGGAAGTTT
AGAAGTTCATACCTGTGTGCCGATGGAGAAGGTCGCTGGGATGGGAATGC
CGTCTGGGGTTTTGGGGCCGCAGTTCTGGGTGGAGTTTGCCGAGAGGACG
GCGAAGAGGGTCGGAATCATGTCGTACGTTTTGTGGACGTGCGGGGTGGT
CTTGTTAGAACACGTGATGGGTAACGTTTCCGTGGGGTTGGCCGTGGCGT
TGCAGCCGTTGTGTCCGCACTTCATGCGAACGATGGGTCCAGAGGAGGTA
GGCCTTTGGATTCTTTGGCAAAAAGCTTGGCACCACAATGTTGGCAAGGG
CTGGCGTTCTTTATGTTGACACCCGCCGCTTCACGCGCCGCAGAGAGAAC
TTCCTTGCGTCGCTGTATGGCGTCATGAAGGTCGGCTATGTCATCCCCTT
GTTGTACAGAGAACAGGTCCGCCTCCCAACGATGACGTCTCGCTGCTAGA
ACCGCAGTTCTAGCAGTGCGTTGATCAATCCTCCGCTGAAGTCGACGGTT
GTTGACAGAAGTTTTATTGATGTGGTATCTCCTGAGCTGTCCGTCCGCTA
CGGCTTTCTTCTTAACGAACGTAGCGAGCTGCCTCTTCTCGCGGATGGCT
TCTTTTTGTGCTGCATACAACATACGTCTCTGTCTGTTTCGTCGCAAACG
CTCTGCATCCGTTGGTTTGTTCCTGGTTCGGTTGTTGGTGTTCATGTTGT
TTGTGGGCACGACGAGTCGGGTTGGGTAGGTAACTATGGGAATGAGGTGG
TGGGTGTGATGGGTGCATGGATGGGGAAATTTTCGAAGGGGTATTGTAAG
ACGCACCGGCACTATCAGGTTTATTAGAAAAATATTAGATTTTTCTATTT
CCGGGGTTGACGCACTCCATTTGGTGGTGTGTGGTGTTGTTGTGGTGTGC
GCGTGGATACACGGTGATCCTAATGATGTTCGGCGTGTGTCGTCGTGTAC
AGTGGTGATTATGAGTGTACCGAAGGATTGAAATGGTGAATGCGATATGC
GTGTGTCCACAAACTCATCTTCGCTGGACTCATCGAAGGTCGTACGTACA
TAAGTATAGCAGACGCGACGCGGGACTGCGGGAAAAATGGGTCGCCGCAA
AAGTCCTTGATGTTCTTCGATGCCACGGCCACTTGTGTCCGAGGCCACCG
GTCGTGACCCGCTCGACTGCGGGTCCCCAGCAGTACTGTATGAGGTTGTG
CTGTAGAGCCGTATTTCATCAGGTTGGAGTACATGGCGGCCATGAAACGA
ATGAGAGACACAAGGTGTCCAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig1021:7779..9300-

>mRNA_P-littoralis_Contig1021.1.1 ID=mRNA_P-littoralis_Contig1021.1.1|Name=mRNA_P-littoralis_Contig1021.1.1|organism=Pylaiella littoralis U1_48|type=CDS|length=360bp|location=Sequence derived from alignment at P-littoralis_Contig1021:7779..9300- (Pylaiella littoralis U1_48)
ATGTTAAAGACGGGTGTGTGTGTAGGAACGTCGGGAAGTTTAGAAGTTCA
TACCTGTGTGCCGATGGAGAAGGTCGCTGGGATGGGAATGCCGTCTGGGG
TTTTGGGGCCGCAGTTCTGGGTGGAGTTTGCCGAGAGGACGGCGAAGAGG
GTCGGAATCATGTCGTACGTTTTGTGGACGTGCGGGGTGGTCTTGTTAGA
ACACGTGATGGGTAACGTTTCCGTGGGGTTGGCCGTGGCGTTGCAGCCGT
TGTGTCCGCACTTCATGCGAACGATGGGTCCAGAGGAGGTAGGCCTTTGG
ATTCTTTGGCAAAAAGCTTGGCACCACAATGTTGGCAAGGGCTGGCGTTC
TTTATGTTGA
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