mRNA_P-littoralis_Contig1020.7.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1020.7.2
Unique NamemRNA_P-littoralis_Contig1020.7.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1020.7.2 vs. uniprot
Match: A0A6H5K2A3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2A3_9PHAE)

HSP 1 Score: 264 bits (675), Expect = 1.440e-78
Identity = 153/219 (69.86%), Postives = 159/219 (72.60%), Query Frame = 1 
Query:    1 EGEVSFKGGISRMLDERRCRLSGGSDTPSDASSTTDEDLDVQFIRVEKELKLKTKELELARVEDELRLRKSGAWFVAGPAAGAVPATGSSDAALMTGTAASATTXXXXXXXXXXPXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGPYKKTPRVTDEAEREGVKAMVKAIGEAFQRAKVRTDVSGKKDGVHHYMALPSNQASRFYLVRYLVKNDAEFAPG 657
            EGEVSFKGGI RMLDERR RLSGGSDTPSD SSTTDEDLDV FIRVEKELKL+TKELELARVEDELRLRKS AWFVAGPA GAVPATGS  AA  +G A S                                              KKTPR TDEA+REGVKAMVKAIGEAFQRAKVRT+V+ K+DGVHHYMALPSNQASRFYLVRYLVKNDAEFAPG
Sbjct:  878 EGEVSFKGGIRRMLDERRGRLSGGSDTPSDISSTTDEDLDVHFIRVEKELKLRTKELELARVEDELRLRKSDAWFVAGPAVGAVPATGSYGAAPASGAAVSKQPKQGRRLYK-----------------------------------KKTPRTTDEAKREGVKAMVKAIGEAFQRAKVRTEVNDKRDGVHHYMALPSNQASRFYLVRYLVKNDAEFAPG 1061
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BLAST of mRNA_P-littoralis_Contig1020.7.2 vs. uniprot
Match: D8LJ26_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ26_ECTSI)

HSP 1 Score: 162 bits (410), Expect = 4.010e-47
Identity = 102/167 (61.08%), Postives = 105/167 (62.87%), Query Frame = 1 
Query:   37 MLDERRCRLSGGSDTPSDASSTTDEDLDVQFIRVEKELKLKTKELELARVEDELRLRKSGAWFVAGPAAGAVPATGSSDAALMTGTAASA-TTXXXXXXXXXXPXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGPYKKTPRVTDEAEREGVKAMVKAIGEAFQRAKV 534
            MLDERR RLSGGSDT SDASSTTDEDLDVQFIRVEKELKLKTKELE+ARVEDELRLRKSGAWFV GPAAGAVPA                 T           P                            RGPYKKT R TDEAERE VKAMVKA+GEAFQRAK+
Sbjct:    1 MLDERRLRLSGGSDTSSDASSTTDEDLDVQFIRVEKELKLKTKELEMARVEDELRLRKSGAWFVTGPAAGAVPAXXXXXXXXXXXXXXXXXTNIPARAAISSVPKSAAPVTGSADGTASASGVAVSKQLKQGRGPYKKTSRTTDEAEREEVKAMVKAVGEAFQRAKL 167
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BLAST of mRNA_P-littoralis_Contig1020.7.2 vs. uniprot
Match: D8LKS3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKS3_ECTSI)

HSP 1 Score: 92.8 bits (229), Expect = 2.140e-21
Identity = 49/57 (85.96%), Postives = 51/57 (89.47%), Query Frame = 1 
Query:    1 EGEVSFKGGISRMLDERRCRLSGGSDTPSDASSTTDEDLDVQFIRVEKELKLKTKEL 171
            EGEVSF GGI R LDERR RL GGSD PSDASSTTD+DLDVQFIRVEKEL+LKTKEL
Sbjct:    2 EGEVSFSGGIRRKLDERRRRLRGGSDNPSDASSTTDQDLDVQFIRVEKELELKTKEL 58
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BLAST of mRNA_P-littoralis_Contig1020.7.2 vs. uniprot
Match: D8LBS5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBS5_ECTSI)

HSP 1 Score: 65.9 bits (159), Expect = 8.650e-11
Identity = 31/34 (91.18%), Postives = 34/34 (100.00%), Query Frame = 1 
Query:  433 GPYKKTPRVTDEAEREGVKAMVKAIGEAFQRAKV 534
            GPYKKTPR+TDEAEREGV+AMVKAIGEAFQRAK+
Sbjct:   48 GPYKKTPRITDEAEREGVEAMVKAIGEAFQRAKM 81
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BLAST of mRNA_P-littoralis_Contig1020.7.2 vs. uniprot
Match: A0A6H5JH42_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH42_9PHAE)

HSP 1 Score: 58.9 bits (141), Expect = 9.610e-7
Identity = 32/41 (78.05%), Postives = 33/41 (80.49%), Query Frame = 1 
Query:    1 EGEVSFKGGISRMLDERRCRLSGGSDTPSDASSTTDEDLDV 123
            EGEVS    I RMLDER  RLSGGS+TPSDASSTTDED DV
Sbjct:  280 EGEVSSNRDIRRMLDERPRRLSGGSNTPSDASSTTDEDRDV 320
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1020.7.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5K2A3_9PHAE1.440e-7869.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LJ26_ECTSI4.010e-4761.08Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LKS3_ECTSI2.140e-2185.96Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LBS5_ECTSI8.650e-1191.18Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JH42_9PHAE9.610e-778.05Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1020contigP-littoralis_Contig1020:25293..26065 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size657
Hectar predicted targeting categoryother localisation
Exons2
Cds size657
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789360.8995802-CDS-P-littoralis_Contig1020:25292..255021680789360.8995802-CDS-P-littoralis_Contig1020:25292..25502Pylaiella littoralis U1_48CDSP-littoralis_Contig1020 25293..25502 -
1680789360.909939-CDS-P-littoralis_Contig1020:25618..260651680789360.909939-CDS-P-littoralis_Contig1020:25618..26065Pylaiella littoralis U1_48CDSP-littoralis_Contig1020 25619..26065 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1020.7.2prot_P-littoralis_Contig1020.7.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1020 25293..26065 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1020.7.2

>prot_P-littoralis_Contig1020.7.2 ID=prot_P-littoralis_Contig1020.7.2|Name=mRNA_P-littoralis_Contig1020.7.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=219bp
EGEVSFKGGISRMLDERRCRLSGGSDTPSDASSTTDEDLDVQFIRVEKEL
KLKTKELELARVEDELRLRKSGAWFVAGPAAGAVPATGSSDAALMTGTAA
SATTVAAGAAVSSVPKSAAPVTGSADGAAPASGAAVSKKPKQGRGPYKKT
PRVTDEAEREGVKAMVKAIGEAFQRAKVRTDVSGKKDGVHHYMALPSNQA
SRFYLVRYLVKNDAEFAPG
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mRNA from alignment at P-littoralis_Contig1020:25293..26065-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1020.7.2 ID=mRNA_P-littoralis_Contig1020.7.2|Name=mRNA_P-littoralis_Contig1020.7.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=773bp|location=Sequence derived from alignment at P-littoralis_Contig1020:25293..26065- (Pylaiella littoralis U1_48)
GAGGGGGAAGTGTCTTTCAAGGGGGGCATCAGTAGAATGCTGGACGAGAG
ACGTTGCCGGCTCAGCGGGGGATCGGACACCCCCTCGGATGCCAGCAGCA
CGACCGATGAAGACCTTGATGTGCAGTTCATCCGAGTCGAGAAGGAGCTG
AAGTTGAAGACGAAGGAACTCGAGTTGGCGAGGGTGGAGGACGAACTCCG
CCTCCGCAAGTCTGGCGCATGGTTTGTGGCCGGCCCTGCCGCTGGCGCCG
TACCTGCCACCGGTTCTTCTGACGCGGCACTCATGACTGGGACTGCTGCT
TCCGCTACAACCGTTGCTGCTGGCGCTGCTGTCTCGAGCGTGCCCAAGAG
CGCCGCACCTGTGACTGGCTCTGCAGATGGTGCTGCACCCGCTTCTGGCG
CGGCTGTCTCGAAAAAGCCCAAGCAAGGCCGGGGCCCGTACAAGAAAGTG
AGCGCATTTGTTCCTTTATATCATGAGAAGAGTTAGGGTTAGATATGGGA
ACACTCAATATTTTTGGAAAATACAAATACTTATGGTGTACAATACCGAC
GAATCAATTACAGACGCCTCGGGTAACCGACGAGGCCGAACGCGAAGGGG
TGAAGGCGATGGTGAAGGCGATTGGCGAAGCCTTCCAGCGGGCCAAGGTC
AGGACCGATGTCAGCGGCAAGAAAGACGGTGTTCATCACTACATGGCTTT
GCCCAGCAACCAAGCTTCGAGATTTTATCTGGTTAGGTACTTGGTAAAGA
ACGACGCCGAATTCGCCCCAGGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig1020:25293..26065-

>mRNA_P-littoralis_Contig1020.7.2 ID=mRNA_P-littoralis_Contig1020.7.2|Name=mRNA_P-littoralis_Contig1020.7.2|organism=Pylaiella littoralis U1_48|type=CDS|length=657bp|location=Sequence derived from alignment at P-littoralis_Contig1020:25293..26065- (Pylaiella littoralis U1_48)
GAGGGGGAAGTGTCTTTCAAGGGGGGCATCAGTAGAATGCTGGACGAGAG
ACGTTGCCGGCTCAGCGGGGGATCGGACACCCCCTCGGATGCCAGCAGCA
CGACCGATGAAGACCTTGATGTGCAGTTCATCCGAGTCGAGAAGGAGCTG
AAGTTGAAGACGAAGGAACTCGAGTTGGCGAGGGTGGAGGACGAACTCCG
CCTCCGCAAGTCTGGCGCATGGTTTGTGGCCGGCCCTGCCGCTGGCGCCG
TACCTGCCACCGGTTCTTCTGACGCGGCACTCATGACTGGGACTGCTGCT
TCCGCTACAACCGTTGCTGCTGGCGCTGCTGTCTCGAGCGTGCCCAAGAG
CGCCGCACCTGTGACTGGCTCTGCAGATGGTGCTGCACCCGCTTCTGGCG
CGGCTGTCTCGAAAAAGCCCAAGCAAGGCCGGGGCCCGTACAAGAAAACG
CCTCGGGTAACCGACGAGGCCGAACGCGAAGGGGTGAAGGCGATGGTGAA
GGCGATTGGCGAAGCCTTCCAGCGGGCCAAGGTCAGGACCGATGTCAGCG
GCAAGAAAGACGGTGTTCATCACTACATGGCTTTGCCCAGCAACCAAGCT
TCGAGATTTTATCTGGTTAGGTACTTGGTAAAGAACGACGCCGAATTCGC
CCCAGGG
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