Homology
BLAST of mRNA_P-littoralis_Contig1020.4.1 vs. uniprot
Match: A0A6H5J557_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J557_9PHAE) HSP 1 Score: 57.8 bits (138), Expect = 5.310e-5 Identity = 26/50 (52.00%), Postives = 36/50 (72.00%), Query Frame = 1 Query: 76 GDAQRARDLAK-FGDRPDDWINPFSLAFVLFGRPAGEQEDVDLKCKVSGG 222
GDA+ DL + +G +P+ W++P SL F +FGRPAG EDVDLK K++ G
Sbjct: 271 GDAETEDDLTRLYGPKPEHWLHPASLVFAIFGRPAGTNEDVDLKLKMTSG 320
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Stop | 1 |
| Start | 0 |
| Model size | 2030 |
| Hectar predicted targeting category | other localisation |
| Exons | 1 |
| Cds size | 459 |
Relationships
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1680789360.8073308-CDS-P-littoralis_Contig1020:18297..18756 | 1680789360.8073308-CDS-P-littoralis_Contig1020:18297..18756 | Pylaiella littoralis U1_48 | CDS | P-littoralis_Contig1020 18298..18756 + |
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1680789360.8204405-UTR-P-littoralis_Contig1020:18756..20325 | 1680789360.8204405-UTR-P-littoralis_Contig1020:18756..20325 | Pylaiella littoralis U1_48 | UTR | P-littoralis_Contig1020 18757..20325 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig1020.4.1 >prot_P-littoralis_Contig1020.4.1 ID=prot_P-littoralis_Contig1020.4.1|Name=mRNA_P-littoralis_Contig1020.4.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=153bp
TPIKKEGQGGETQEDEEDEDQDGAGGDAQRARDLAKFGDRPDDWINPFSL
AFVLFGRPAGEQEDVDLKCKVSGGGKTGAAATAAVEPGGAGVGSAAKARG
LGRHDLANLDGAGGGAGGQQSRAAVKKERYVANAEEKRAERVRPPLSLGP
RP* back to topmRNA from alignment at P-littoralis_Contig1020:18298..20325+ Legend: CDSpolypeptideUTR Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_P-littoralis_Contig1020.4.1 ID=mRNA_P-littoralis_Contig1020.4.1|Name=mRNA_P-littoralis_Contig1020.4.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2028bp|location=Sequence derived from alignment at P-littoralis_Contig1020:18298..20325+ (Pylaiella littoralis U1_48)
ACTCCCATCAAGAAGGAAGGGCAGGGGGGGGAGACGCAGGAGGACGAAGA
GGACGAAGATCAGGACGGGGCAGGTGGAGATGCTCAACGTGCACGTGACT
TGGCTAAGTTCGGCGATAGGCCCGACGACTGGATCAATCCCTTCAGCCTT
GCCTTCGTGTTGTTCGGGCGGCCCGCCGGCGAGCAAGAGGACGTGGACCT
CAAATGCAAGGTGTCTGGAGGCGGCAAGACGGGCGCGGCAGCAACTGCCG
CAGTCGAACCGGGGGGTGCGGGCGTTGGTTCTGCGGCGAAAGCCCGTGGG
CTGGGCAGGCACGACCTGGCCAACCTGGATGGGGCCGGGGGCGGGGCCGG
CGGTCAGCAAAGTCGCGCGGCAGTTAAGAAGGAGAGGTATGTAGCGAACG
CAGAGGAAAAGAGGGCGGAGAGAGTAAGGCCACCGCTAAGTTTAGGGCCG
AGGCCTTGAAGGCCATGACTGCCCCCGCCCAATCTTCGGAGAGCTCGAAG
AGACTGGCCCTTAGCGTGGAAACGCTCACAAGGACTGCCGTGCTGAGGCA
GTGTCTCGCTGAAGAGGGGGCCGAGGAGAGAAGTTGGACGTTCCGAAAGG
TCGCCAAGGAATCCCATATGCCCAGCTCGAAAAAATGGGACAAGGAAATA
CAGAGCAGTGGGATCGAGCACAGGAAGAGCTGCAGATATTGAGCAACCCC
CCCGGCGCAACGACGCAGACAGCTACGTTTGAGTTGTACCCTACCACTAC
CCTTCAGGGCTCAGGTAGTGGTGCCGGAGCCGGTGCCGCAGTCGATGGCA
GTGGTGGCGGGGCAGGGGGGGTGCAGCAGGAGATGCTATTGTTGTTTGGG
GAGTCGATGGGGGTGGAGGAGCTGCAGGCGGTACGCTGGAATTTGCTGGC
GAATCGGCGATATGAAACAGCCGGGGTGGTGAGGTTTTGATTTTTTGGTT
TAGCTGGAGTGACAGGCAAAAGGGTGGAGGCGGGGGGGAGGTCTTATTGC
GACCGTCACGTGTACGGTAAACTGATATTATCTGGTCGTGTTCGTGTTGT
GTCGAACCAACATCTGGTTGTTTTTTTCGTGTGTGACTGCTGTCGTGTGA
AACAACACCAGTTGTgaGAAGAGGGTACTGATGCGCCGGGTCGCACCATT
TTTTAATATTTTATTCATGTTTAATGCTGCTAAACTGATAACACCAGTCG
TGATCCATCTATGCCGGTGTTGGTATGCCAGAAGGGGTCAGCGACACGCA
GAGTCGAGCCGAGATTGTTTTTTTAGTGTTTGACTGTATCTGCGTGAAAA
ACAAAAGTTGTGTGTTCGTGTTTACTGCTGCCGCTGTGGAGAATAGCACT
GGCGGTGGTGGTACTTGACGCCACGTTCTTTTCGTGAGGAGAGGGATTTG
ATGCGCAGGGTCGAACCCGAAGTCTTTAGTGAGAGAGGAGTAGCGGGACG
TTCGGGTCGAGGTGAGATTCGATAGtTTTTTTATTTTCGTGTTCATAGTC
GTGTGAAACAATGCTGTTGGTGTAAGACTTTTGCGCATGTGTTTTTTTGC
GCAGCGCGAGAGGTATTCTGCCAGGTTCCCACTACAAGGTTGTGTGTTTG
TTACGTTTGCGAAGATGAATCACAGTCGAAGCTAACACTGTTTCCGAAGT
GTCTGCGTGTCTCTACTTCGGCAAGCTTCCCAACGGACTTGCGTACGACG
AGTATGCACACAGATACAACACGACGAAACGTTTCATCAGAGTCCTCTTT
CGAACTGGATTTAGTAACGTTTGCGAAAGTGAAAAATGTTTCGGCTATGA
TGCCACCGCAAAAACCAGGGATTTGGACACAATTCAAATACATCTCGGTA
CGCAGATAAGAATCAGAGCAGTACATGTGTCGTGCGAAACTAAAAAGTTG
CCATAGGCACAAGGGTATACGAAGTACAGCAGTATAGAATACTGTCATAT
GAACCAGCATGCCCTCCTCTGTGCGTTTTGCGGCTAGTGCACTGCCTGCC
GCGAGTGACCTTGAAACAAGAGGTAGAT back to topCoding sequence (CDS) from alignment at P-littoralis_Contig1020:18298..20325+ >mRNA_P-littoralis_Contig1020.4.1 ID=mRNA_P-littoralis_Contig1020.4.1|Name=mRNA_P-littoralis_Contig1020.4.1|organism=Pylaiella littoralis U1_48|type=CDS|length=459bp|location=Sequence derived from alignment at P-littoralis_Contig1020:18298..20325+ (Pylaiella littoralis U1_48)
ACTCCCATCAAGAAGGAAGGGCAGGGGGGGGAGACGCAGGAGGACGAAGA
GGACGAAGATCAGGACGGGGCAGGTGGAGATGCTCAACGTGCACGTGACT
TGGCTAAGTTCGGCGATAGGCCCGACGACTGGATCAATCCCTTCAGCCTT
GCCTTCGTGTTGTTCGGGCGGCCCGCCGGCGAGCAAGAGGACGTGGACCT
CAAATGCAAGGTGTCTGGAGGCGGCAAGACGGGCGCGGCAGCAACTGCCG
CAGTCGAACCGGGGGGTGCGGGCGTTGGTTCTGCGGCGAAAGCCCGTGGG
CTGGGCAGGCACGACCTGGCCAACCTGGATGGGGCCGGGGGCGGGGCCGG
CGGTCAGCAAAGTCGCGCGGCAGTTAAGAAGGAGAGGTATGTAGCGAACG
CAGAGGAAAAGAGGGCGGAGAGAGTAAGGCCACCGCTAAGTTTAGGGCCG
AGGCCTTGA back to top
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