mRNA_P-littoralis_Contig1020.25.1 (mRNA) Pylaiella littoralis U1_48
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig1020.25.1 vs. uniprot
Match: D8LJ63_ECTSI (Guanylate cyclase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ63_ECTSI) HSP 1 Score: 795 bits (2052), Expect = 1.410e-268 Identity = 449/667 (67.32%), Postives = 509/667 (76.31%), Query Frame = 1 Query: 1 HLPLLNMIIPLYNEQAAGAATSALQDMHGKLRRLADLIGALLAHRLEYSKNGAASIERNKKQGVTVAATPGSTNVRRSSLSRAGSAIRLAVLGDNTRMLSPLADDRKGCGAAMVLDNTQWLDHNRRVRVRVVAWELLHLLRRAAPGMLIFAAFRPFSEVNLMHTIALKAMPGTLKMNMGRLTATQVALILADTFGVQRTNEKLLEFLEVTAKGNPRDVIHMMEDLVKEEIVEVSLGAVVILKDLSESSLKIKDHTSAPVIAKYDQLTRGTQHLVQAAAVIGQEVPLDLLVSVHSLLSSYSASSPKAPSPEESVSTTESRA---------------RASDADAQINTLVRVGLLERSSLDSVRFVAKYMATIIYDMILHSKRQDMHKAAGDQDLAIEFLVMAAEVAISRGDPAGAQLACTAITQAVDDSGASGHHTLLDQASTTRVLRETKFHLLVGQTAILSQNWESAEMSLQLAVDMSCADSMPEQGFASKVLSLWNTKQRRKIKLGGGGYPRNNKKPHRWLFGYGNTTS---SNRKLPRTATLTLRERVEMAEMSHRSESEAGDDWSVSSHGSNPVREETLDLSRVERYGPCGVMLKKCGNDAKLLLSRLKKYQEATRSFHRDLLEDNRNVIQTHSQMFVDSAGIFSVAHRTDPSVLPWCLRGNN 1947
HLPLLNMI+PLYNEQAAGA T+ QD H KLRRLAD+I ALL HRLE SK GAA+ ++ V+ATP N +++RAGSA RLA +GD T++ S ++ +GCGAA+VLDNTQWLDHN +WEL+HLLR+A PGMLIFAAFRPFSE+NL HTIALK +PGTLKMNMGRLTATQV LIL+D+FGVQRT+E+LLEFLEVTAKGNPRDVIHMMEDL KE VEV+LGAVVILK+LSE+SLKIKDHTSAPVIAKYDQLTRGTQ LVQAAAVIGQEVPLDLLV VHS+L+ ++ A S D DAQINTLVRVGLLERSS +SVRFVAKYM T+IYDMILHSKRQDMHKAAGDQDLA+ FLVMAAEVAI+ GDP AQLAC A+TQAVDDSGASGH TLLDQ VLRETKFHLLVGQTAILSQ+WESAEMSLQLAVDMS D++P+Q FA K+ S W +++ + GGGG N P+RW+ GY N + + KL RT TLTL +R E AE+SHR S+A S S S REE LDL+ VERYGPCGVMLKKCGNDAK+LL RL YQEATRSFHRDLL DN+ +IQ H+QMFV S GI SV+HRTDPSVLP LRGNN
Sbjct: 988 HLPLLNMILPLYNEQAAGAVTTGAQDTHSKLRRLADMIAALLVHRLEASKMGAATTTAGYRKDAAVSATPTPAN----NMTRAGSAFRLAAVGDATKVNS--VEEGRGCGAAIVLDNTQWLDHN--------SWELMHLLRKALPGMLIFAAFRPFSEMNLKHTIALKTVPGTLKMNMGRLTATQVMLILSDSFGVQRTSEELLEFLEVTAKGNPRDVIHMMEDLFKEGFVEVNLGAVVILKELSENSLKIKDHTSAPVIAKYDQLTRGTQQLVQAAAVIGQEVPLDLLVDVHSMLTPSRENNHPATSXXXXXXXXXXXXXXXXXXXXXXXXXXXERDDVDAQINTLVRVGLLERSSPESVRFVAKYMVTVIYDMILHSKRQDMHKAAGDQDLAVNFLVMAAEVAIACGDPTEAQLACGAVTQAVDDSGASGHLTLLDQ-----VLRETKFHLLVGQTAILSQDWESAEMSLQLAVDMSGVDNIPKQSFADKIFSPWKNRRKEGHRRGGGGGKGTN--PYRWI-GYNNNNAGPTAKGKLRRTNTLTLYQRAEQAELSHRRVSDA----STQSDESTSHREEVLDLNNVERYGPCGVMLKKCGNDAKMLLGRLNTYQEATRSFHRDLLTDNKKIIQAHNQMFVTSGGILSVSHRTDPSVLPRYLRGNN 1628
BLAST of mRNA_P-littoralis_Contig1020.25.1 vs. uniprot
Match: A0A6H5KP26_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP26_9PHAE) HSP 1 Score: 664 bits (1713), Expect = 4.130e-232 Identity = 377/539 (69.94%), Postives = 418/539 (77.55%), Query Frame = 1 Query: 409 LHLLRRAAPGMLIFAAFRPFSEVNLMHTIALKAMPGTLKMNMGRLTATQVALILADTFGVQRTNEKLLEFLEVTAKGNPRDVIHMMEDLVKEEIVEVSLGAVVILKDLSESSLKIKDHTSAPVIAKYDQLTRGTQHLVQAAAVIGQEVPLDLLVSVHSLLSSYSASSPKAPSPEESVSTTESRARAS-----------------------DADAQINTLVRVGLLERSSLDSVRFVAKYMATIIYDMILHSKRQDMHKAAGDQDLAIEFLVMAAEVAISRGDPAGAQLACTAITQAVDDSGASGHHTLLDQASTTRVLRETKFHLLVGQTAILSQNWESAEMSLQLAVDMSCADSMPEQGFASKVLSLW-NTKQRRKIKLGGGGYPRNNKKPHRWLFGYGNTT--SSNRKLPRTATLTLRERVEMAEMSHRSESEAGDDWSVSSHGSNPVREETLDLSRVERYGPCGVMLKKCGNDAKLLLSRLKKYQEATRSFHRDLLEDNRNVIQTHSQMFVDSAGIFSVAHRTDPSVLPWCLRGNN 1947
+HLLR+ PGMLIFAAFRPFSE+NL HTIALK +PGTLKMNMGRLTATQV LIL+D FGVQRT+E+LLEFLEVTAKGNPRDVIHMMEDL KE IVEV+LGAVVILK+LSE+SLKIKDHTSAPVIAKYDQLTRGTQ LVQAAAVIGQEVPLDLLV VH++L+ PS E S TT S AS D DAQINTLVRVGLLERSS +SVRFVA YM T+IYDMILHSKRQDMHKAAGDQDLA+ FLVMAAEVAI+ GDP AQLAC A+TQAVDDSGASGH TLLDQA T VL+ETKFHLLVGQTAILSQ+WESAEMSLQLAVDMS ++ P+Q FA K+LS W N +++ + G GG N P+RW+ GY N ++ K RT TLTL +R E AE+ HRS S+A S S S REE LDL+ VERYGPCGVMLKKCGNDAK+LL RL KYQEATRSFHRDLL DN+ +IQ H+QMFV S GI SV+HRTDPSVLP LRGNN
Sbjct: 1 MHLLRKTLPGMLIFAAFRPFSEMNLKHTIALKTVPGTLKMNMGRLTATQVTLILSDIFGVQRTSEELLEFLEVTAKGNPRDVIHMMEDLFKEGIVEVNLGAVVILKELSENSLKIKDHTSAPVIAKYDQLTRGTQQLVQAAAVIGQEVPLDLLVDVHAMLT---------PSRENSHPTTSSPTSASASDDAMVAPGSPAEGGRGGGERDDVDAQINTLVRVGLLERSSPESVRFVANYMVTVIYDMILHSKRQDMHKAAGDQDLAVNFLVMAAEVAIACGDPTEAQLACGAVTQAVDDSGASGHLTLLDQACQTVVLQETKFHLLVGQTAILSQDWESAEMSLQLAVDMSGVENNPKQSFADKILSAWKNRRKKGHPRAGSGGKGTN---PYRWI-GYNNNAVPAAKGKQGRTNTLTLYQRAEQAELCHRSVSDA----STQSDESTSHREEVLDLTNVERYGPCGVMLKKCGNDAKMLLDRLNKYQEATRSFHRDLLTDNKKIIQAHNQMFVTSGGILSVSHRTDPSVLPRYLRGNN 522 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1020.25.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig1020.25.1 >prot_P-littoralis_Contig1020.25.1 ID=prot_P-littoralis_Contig1020.25.1|Name=mRNA_P-littoralis_Contig1020.25.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=643bp MIIPLYNEQAAGAATSALQDMHGKLRRLADLIGALLAHRLEYSKNGAASIback to top mRNA from alignment at P-littoralis_Contig1020:73939..85148- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig1020.25.1 ID=mRNA_P-littoralis_Contig1020.25.1|Name=mRNA_P-littoralis_Contig1020.25.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=11210bp|location=Sequence derived from alignment at P-littoralis_Contig1020:73939..85148- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig1020:73939..85148- >mRNA_P-littoralis_Contig1020.25.1 ID=mRNA_P-littoralis_Contig1020.25.1|Name=mRNA_P-littoralis_Contig1020.25.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1929bp|location=Sequence derived from alignment at P-littoralis_Contig1020:73939..85148- (Pylaiella littoralis U1_48)back to top |