Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Stop | 1 |
Start | 1 |
Model size | 2637 |
Hectar predicted targeting category | other localisation |
Exons | 4 |
Cds size | 2103 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1680789360.6336148-UTR-P-littoralis_Contig1020:9665..10016 | 1680789360.6336148-UTR-P-littoralis_Contig1020:9665..10016 | Pylaiella littoralis U1_48 | UTR | P-littoralis_Contig1020 9666..10016 - |
1680789360.6734684-UTR-P-littoralis_Contig1020:12904..12973 | 1680789360.6734684-UTR-P-littoralis_Contig1020:12904..12973 | Pylaiella littoralis U1_48 | UTR | P-littoralis_Contig1020 12905..12973 - |
1680789360.6823153-UTR-P-littoralis_Contig1020:13817..13931 | 1680789360.6823153-UTR-P-littoralis_Contig1020:13817..13931 | Pylaiella littoralis U1_48 | UTR | P-littoralis_Contig1020 13818..13931 - |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1680789360.6449807-CDS-P-littoralis_Contig1020:10016..11551 | 1680789360.6449807-CDS-P-littoralis_Contig1020:10016..11551 | Pylaiella littoralis U1_48 | CDS | P-littoralis_Contig1020 10017..11551 - |
1680789360.6538353-CDS-P-littoralis_Contig1020:11617..12124 | 1680789360.6538353-CDS-P-littoralis_Contig1020:11617..12124 | Pylaiella littoralis U1_48 | CDS | P-littoralis_Contig1020 11618..12124 - |
1680789360.6627634-CDS-P-littoralis_Contig1020:12843..12904 | 1680789360.6627634-CDS-P-littoralis_Contig1020:12843..12904 | Pylaiella littoralis U1_48 | CDS | P-littoralis_Contig1020 12844..12904 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig1020.2.2 >prot_P-littoralis_Contig1020.2.2 ID=prot_P-littoralis_Contig1020.2.2|Name=mRNA_P-littoralis_Contig1020.2.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=701bp
MEGRQKEDSSVWLWKKESAVVAALRGIEEGDATESKRNGGSWEHEQKEEL KPPDAAKTPPEPPELFPPPGMNRGEVLEGGENNEILKKKEEKKPSGDIGD LLEAHLASLKYPAADDSVDGLSVQWDDGDRITVGSEVSSWLSRPQSVGGR SGASGRALKFARKQREDKEQALPPVEKRLHRAKTAGGFTPLAGLVEEAVE EALGGGAGPSDTFRDNFDGNGRLFRGIWETTYLIVVGSILWALWAYEGSS PSVPDVITVVVSAAGSLGIVARAFSARGYIGVIYRGHVGSGIVDLHLVSA GNLDAFFSRWGVCRSWSSGRAVRDAVAFVILSPLVLGLVLSSMTKVVHFV FHLVVGTENNGSWELGTGVLRYRDRVVVLPFMEKRTLGIYRGRTSRIRWP GGASRSYYGDSVKGSWALHFASRDSFLAELGCEKVFLQFGTERRLICEAG SRVLSFVIAMRDTRGGLLLIPVDTAGGVRVQVRALAFSGAAAGVTILMGV ECPEREPYPEDKVAETLHLQGAPFCLDVSACGIGAHKTADSQANMFCVLD GAGAGAVTDVCPLWKCLDDMCFDSLAAAWAAGYFGGHFLSLDEYCSNDEV RKHVGQGKGRRCVVSTPPREAPGVDYDVVLGVRAHRRGILKIPVDLPGEL SFLPRRYRFVQPTGISGKYCLIPAGINAKWEYALGGVAEHLENCEECLVA * back to topmRNA from alignment at P-littoralis_Contig1020:9666..13931- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_P-littoralis_Contig1020.2.2 ID=mRNA_P-littoralis_Contig1020.2.2|Name=mRNA_P-littoralis_Contig1020.2.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=4266bp|location=Sequence derived from alignment at P-littoralis_Contig1020:9666..13931- (Pylaiella littoralis U1_48) TGACGTTAGATGTCATAGTCTTTGGCCAGCGTTGCACCAAGGTACTCAGG
AACAACAGGGTACATATCTACCGCGCGTCGACCGTGCCTGAGAATCGAGC
GTGCTGTCTGTCATGTGAGAGATTACAGAGTGCGGGGAGAACCCTCCGCA
ACTTTTTTCGTAGAATTTTCCACCGGCTTCACACGCACGCGCCAGCTCTT
GCGCAGCGTAGTGCAACCAGTAGCGCTCCTCCTTTCCTCTGTCCCCATCT
GTCTCTCTGCCGCTCTTTAACTGTCTCCCTTCCTCACACTTGGTCTGAAT
CCGCCAGCGCATTCAATCTCAGCGGGCCAGCACCCACACGGGTGGACACG
TGTGTAAAAAGGTCACGCAAAAAATTACAATCTTGAAAATCTCGCTTCCC
AATGTAAAATAGACGACACACAGCTCTTGAAAATTTCGCTTTCTAACGGG
GGAAAGCCCCAGGGGCCTTCACTGTCGATAGCGATGTCGTAGTTCTTTAG
CGATCAAAATGGGCGATATCTCGCTACATGTGTCTTGCCCGTTGGTAGAT
CTCAGGCACAAAATCACACACATACACCCTCCGCAAAAACATACACATCA
TCACCGCAGCAGCCGGTTTGAACGCGGGGCTCTGTAGCGTTCATCGGCAG
GAAAGGCCCGGCACTCTTGTCGACACCTATTAATATCGACACTGGAGTCC
CAAAAGGGTCAACGTTGCATGTATTTGAAGTGCAGAGCAAAGAGTGGCAT
AGTGGCCATCTGCTGATGAGAACCTGCAAGAGGTCCCTGAGGACGTAGCC
TTGACGCAATGTCGGCATACACATGATGGCACCTTGCACGGACGCCACAA
GCTCACAATACCCACGGGTGACAATGCGTGCGCATGCATTCTCAGCAATC
CTGTCACTCTCTCACCATCATTTATTTCCTTCCGTTGGCGCTTCTCTTGC
CCCTCAAGCTTTCCCTCGCAGAGTTTGGGAGAGGGGGGGAATCACGCATC
TTTCGCCATACAGATCTCTTCTCGAAGATGGAGGGACGCCAAAAAGAGGA
CTCTAGCGTGTGGTTGTGGAAGAAGGAGTCCGCTGTTGGTGAGAAGAGTT
CATGGTTTATTATCCGTTTGTGTACTGACGTGCTAACTGGGGTTTGACTT
GTTTGTCAGGGGGGCAAGGCGCACAAGGAAAGTCACCCCACACACCACAC
TACCCCCACCTCGTCCCTCGGAGGGTGTGAAAAAAAGGATTTTGTTCGTT
TTTGACGGTTAGAAAGACAAATGAAGCAAGCCGCACAACAGGGAGCACCT
CTCGTGCCCTCTAGAACACTTTATGCGCCAGTTTGAGGTGGCTGGATGCT
CTCTGAGTGTCGTGCATCGAGGAACAAAATCACCGTTGCGCGAGGGCGTG
AGGGGGTCCGCAGGGGGATCGCAAATGCATCCGGCAACCCATCATGCATG
TTCTCCTCTCTGCGCCGCCCTTTACAAAGATTTTAGTGTAGAGACCCCCC
TCCCCCCCCTGAGAGGTCCCAAAAAAAGTATTGGGGGTGTGCTGTCGGAA
ACATTTTTTTTTGTGCGCCCTTGAGAGAGTTTTTTTTTTCCGTCGAACTT
GTTCGCAGTTGTTCGCAGTGCTCCTTCGTGGGGAAATATTTCACGGGGCA
GACATCAAGAGCGCTTTCTTCCAGACTCGTCCATAGAGAGCTGCGGTATG
ATTCAACCAAGCAACCCACTGCCCTGCTAGGTTTAGATTCTATAGCTATT
GCTCCAGATTGAGTATGTGGGCTCCTCAACTTGGCTGTGTGCCCTATACT
TTCCCAGTCGCAGCGCTGCGTGGCATTGAGGAGGGAGACGCGACGGAAAG
CAAAAGAAACGGCGGAAGTTGGGAACACGAGCAAAAGGAAGAGTTAAAGC
CACCAGACGCAGCGAAGACGCCCCCTGAGCCCCCTGAGCTTTTTCCGCCG
CCCGGAATGAACCGTGGGGAAGTGCTGGAGGGAGGGGAAAATAATGAAAT
ATTGAAAAAAAAAGAAGAAAAAAAACCATCCGGCGACATTGGTGACTTGT
TAGAAGCTCATTTAGCTTCTTTGAAATATCCCGCAGCCGATGATTCCGTC
GATGGATTATCAGTCCAATGGGATGATGGCGATAGAATCACGGTCGGGAG
TGAAGTAAGTTCGTGGCTGTCAAGACCACAATCTGTAGGGGGCAGGAGTG
GAGCAAGTGGGAGGGCATTGAAGTTCGCCCGAAAACAGAGGGAGGACAAG
GAGCAAGCGCTACCTCCGGTGGAGAAAAGACTTCACAGGGCTAAAACCGC
TGGGGGTTTCACCCGCTTTTCCGACCTTGCCTTGGACAAGGAGGTGCCCT
GCAATGGCGTCACCAAAGGGAACGGGCTGCCGCTGGCCGGCCTAGTCGAA
GAGGCCGTGGAAGAAGCCCTCGGCGGGGGCGCTGGTCCTTCGGACACGTT
CCGGGACAACTTCGACGGCAACGGCAGACTTTTTCGCGGGATTTGGGAGA
CGACGTACTTGATAGTTGTGGGCTCCATTCTCTGGGCGCTGTGGGCCTAC
GAAGGAAGTTCGCCGAGCGTGCCGGACGTAATAACCGTCGTGGTCTCCGC
CGCTGGATCTCTCGGCATTGTGGCCAGGGCATTCTCTGCTCGCGGCTACA
TCGGCGTCATCTACAGGGGCCACGTGGGCTCAGGAATAGTCGACCTACAC
CTCGTTTCTGCCGGCAACCTGGACGCGTTTTTCAGCCGATGGGGCGTGTG
CCGGAGCTGGTCGTCTGGAAGAGCCGTGCGCGATGCCGTGGCCTTCGTGA
TTCTTTCCCCGCTTGTTTTAGGTCTGGTGCTTTCGAGCATGACGAAAGTC
GTCCATTTCGTCTTCCACCTCGTGGTCGGGACCGAGAACAACGGCAGTTG
GGAGCTCGGAACGGGTGTGCTGAGGTATCGTGACAGGGTGGTGGTGCTAC
CCTTCATGGAGAAGCGAACGTTGGGGATCTACCGGGGAAGAACCAGCAGG
ATACGATGGCCCGGTGGCGCTTCGAGGTCGTACTACGGCGACTCCGTGAA
GGGTTCGTGGGCGCTGCACTTCGCGAGCAGAGACTCCTTCTTGGCCGAGC
TAGGCTGCGAGAAGGTCTTCCTGCAGTTCGGTACGGAGCGCAGGCTCATC
TGCGAAGCCGGGTCGAGGGTTCTGTCGTTCGTGATCGCCATGCGGGACAC
TCGCGGCGGGCTCCTACTTATCCCCGTGGATACTGCGGGGGGTGTTCGAG
TCCAGGTTCGTGCTCTCGCCTTCTCCGGGGCAGCTGCTGGCGTCACCATC
TTGATGGGCGTGGAGTGCCCCGAAAGAGAGCCCTACCCAGAGGACAAGGT
GGCCGAGACCTTGCATCTGCAGGGCGCACCATTCTGTCTGGATGTTTCCG
CGTGCGGCATCGGCGCGCACAAGACCGCTGATTCCCAGGCCAACATGTTT
TGTGTGCTCGACGGTGCAGGGGCGGGTGCTGTGACCGACGTGTGCCCCCT
TTGGAAGTGCCTAGACGATATGTGCTTCGATTCACTTGCAGCGGCATGGG
CTGCCGGGTACTTCGGTGGCCATTTTCTTAGCCTTGATGAATACTGCAGC
AACGACGAGGTGCGGAAACACGTGGGGCAAGGAAAAGGTAGACGCTGTGT
CGTCTCGACACCACCTCGCGAGGCACCGGGGGTGGACTACGATGTGGTGT
TGGGCGTGCGCGCCCATAGGCGCGGCATCCTCAAGATACCGGTTGACCTT
CCCGGCGAATTGTCCTTCCTTCCGAGGCGGTACCGGTTTGTTCAACCTAC
GGGCATCAGTGGGAAGTATTGTCTCATCCCCGCAGGAATAAACGCTAAGT
GGGAGTACGCTCTTGGTGGAGTGGCAGAGCACTTGGAGAATTGCGAAGAA
TGTTTGGTAGCTTGACGAAAATCGCCAAGGTGTACACAGGCTACATAATA
GGTGCCGCCTGCGCTATAGCGTATTGCACGTGTGCGAAATATCCCTTCCC
GAAATTAGTTTACGATCGAAAAGCTGTGTATCGCTACATATGGCGCCACC
TGTTATGAAGCTCCTCTGTCGAGCGAGGCGCGGGGGGCGTATTTCTGTGG
GGAAACCAACCGCCCCATGCTGCATATTGTACTTCTACAGATTATCTTGT
TGGCTTCTGTCCGTGCATCTCAAGTGGGCCCAAGTTTTATATTGTGGATA
CGCTTAGCATGGGTTGCCTCAGAACCAGCTGGTGGCGCCATCGTTTGCAG
CATTGTAGGGGACGCT back to topCoding sequence (CDS) from alignment at P-littoralis_Contig1020:9666..13931- >mRNA_P-littoralis_Contig1020.2.2 ID=mRNA_P-littoralis_Contig1020.2.2|Name=mRNA_P-littoralis_Contig1020.2.2|organism=Pylaiella littoralis U1_48|type=CDS|length=2103bp|location=Sequence derived from alignment at P-littoralis_Contig1020:9666..13931- (Pylaiella littoralis U1_48) ATGGAGGGACGCCAAAAAGAGGACTCTAGCGTGTGGTTGTGGAAGAAGGA GTCCGCTGTTGTCGCAGCGCTGCGTGGCATTGAGGAGGGAGACGCGACGG AAAGCAAAAGAAACGGCGGAAGTTGGGAACACGAGCAAAAGGAAGAGTTA AAGCCACCAGACGCAGCGAAGACGCCCCCTGAGCCCCCTGAGCTTTTTCC GCCGCCCGGAATGAACCGTGGGGAAGTGCTGGAGGGAGGGGAAAATAATG AAATATTGAAAAAAAAAGAAGAAAAAAAACCATCCGGCGACATTGGTGAC TTGTTAGAAGCTCATTTAGCTTCTTTGAAATATCCCGCAGCCGATGATTC CGTCGATGGATTATCAGTCCAATGGGATGATGGCGATAGAATCACGGTCG GGAGTGAAGTAAGTTCGTGGCTGTCAAGACCACAATCTGTAGGGGGCAGG AGTGGAGCAAGTGGGAGGGCATTGAAGTTCGCCCGAAAACAGAGGGAGGA CAAGGAGCAAGCGCTACCTCCGGTGGAGAAAAGACTTCACAGGGCTAAAA CCGCTGGGGGTTTCACCCCGCTGGCCGGCCTAGTCGAAGAGGCCGTGGAA GAAGCCCTCGGCGGGGGCGCTGGTCCTTCGGACACGTTCCGGGACAACTT CGACGGCAACGGCAGACTTTTTCGCGGGATTTGGGAGACGACGTACTTGA TAGTTGTGGGCTCCATTCTCTGGGCGCTGTGGGCCTACGAAGGAAGTTCG CCGAGCGTGCCGGACGTAATAACCGTCGTGGTCTCCGCCGCTGGATCTCT CGGCATTGTGGCCAGGGCATTCTCTGCTCGCGGCTACATCGGCGTCATCT ACAGGGGCCACGTGGGCTCAGGAATAGTCGACCTACACCTCGTTTCTGCC GGCAACCTGGACGCGTTTTTCAGCCGATGGGGCGTGTGCCGGAGCTGGTC GTCTGGAAGAGCCGTGCGCGATGCCGTGGCCTTCGTGATTCTTTCCCCGC TTGTTTTAGGTCTGGTGCTTTCGAGCATGACGAAAGTCGTCCATTTCGTC TTCCACCTCGTGGTCGGGACCGAGAACAACGGCAGTTGGGAGCTCGGAAC GGGTGTGCTGAGGTATCGTGACAGGGTGGTGGTGCTACCCTTCATGGAGA AGCGAACGTTGGGGATCTACCGGGGAAGAACCAGCAGGATACGATGGCCC GGTGGCGCTTCGAGGTCGTACTACGGCGACTCCGTGAAGGGTTCGTGGGC GCTGCACTTCGCGAGCAGAGACTCCTTCTTGGCCGAGCTAGGCTGCGAGA AGGTCTTCCTGCAGTTCGGTACGGAGCGCAGGCTCATCTGCGAAGCCGGG TCGAGGGTTCTGTCGTTCGTGATCGCCATGCGGGACACTCGCGGCGGGCT CCTACTTATCCCCGTGGATACTGCGGGGGGTGTTCGAGTCCAGGTTCGTG CTCTCGCCTTCTCCGGGGCAGCTGCTGGCGTCACCATCTTGATGGGCGTG GAGTGCCCCGAAAGAGAGCCCTACCCAGAGGACAAGGTGGCCGAGACCTT GCATCTGCAGGGCGCACCATTCTGTCTGGATGTTTCCGCGTGCGGCATCG GCGCGCACAAGACCGCTGATTCCCAGGCCAACATGTTTTGTGTGCTCGAC GGTGCAGGGGCGGGTGCTGTGACCGACGTGTGCCCCCTTTGGAAGTGCCT AGACGATATGTGCTTCGATTCACTTGCAGCGGCATGGGCTGCCGGGTACT TCGGTGGCCATTTTCTTAGCCTTGATGAATACTGCAGCAACGACGAGGTG CGGAAACACGTGGGGCAAGGAAAAGGTAGACGCTGTGTCGTCTCGACACC ACCTCGCGAGGCACCGGGGGTGGACTACGATGTGGTGTTGGGCGTGCGCG CCCATAGGCGCGGCATCCTCAAGATACCGGTTGACCTTCCCGGCGAATTG TCCTTCCTTCCGAGGCGGTACCGGTTTGTTCAACCTACGGGCATCAGTGG GAAGTATTGTCTCATCCCCGCAGGAATAAACGCTAAGTGGGAGTACGCTC TTGGTGGAGTGGCAGAGCACTTGGAGAATTGCGAAGAATGTTTGGTAGCT TGA back to top
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