mRNA_P-littoralis_Contig102.82.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig102.82.1 vs. uniprot
Match: A0A6H5KDL6_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDL6_9PHAE) HSP 1 Score: 329 bits (844), Expect = 3.720e-107 Identity = 176/276 (63.77%), Postives = 207/276 (75.00%), Query Frame = 1
Query: 1 TIHSGFCIPV-QNSRDSHPSQ------GDLQPRIIGVDFILVDEFSMVGKDMLGLMSAQGRQAVEERSREPSRGFHLDVFGGLGNILVGDRAQLSPVGASSLWCPTPLSRGLCVQELRAWLAMNNAVELTQVISQLSPEQAASRDALLRITEGTQTEDDWNLLK*RFTNTVGAAERDCFDTAVHIFPTNTKADERNRCRLNSIGTLIVRIDASHNVRGYQAVPADRVRDLQPNISLAVGARVFINNNVWVSAGLANGAIGEMVHMQLAEGKAPPQL 807
TIH GF IPV Q++R S PS+ DLQ R+ VDFILVDEFSMVG+D+LGLMSA+G+QAVE R + F DVFGGL ILVGD AQL PVGA LW P + GL +Q L+AWL+MNNAVELTQV+ Q PEQAA RD LLRI EG QT DDW++LK RF VGAAER+ FD AVHIFPTN AD+ N RLNS+GT I RI+A+H + GY AV ++R R LQ +I LA+GARVF++N VWVSAGLANGA+GE+VHMQ AEG+ PPQL
Sbjct: 3 TIHGGFRIPVVQSNRSSDPSRMTEAALRDLQERMAEVDFILVDEFSMVGQDILGLMSARGKQAVEGRRGDGIEDFRQDVFGGLSIILVGDPAQLPPVGARPLWKHNPSTGGLSMQGLQAWLSMNNAVELTQVMRQQGPEQAAFRDTLLRIAEGMQTADDWDVLKRRFIAAVGAAERETFDDAVHIFPTNALADDWNWRRLNSLGTPIARINATHTIHGYNAVSSERFRGLQSHIFLAIGARVFVHNIVWVSAGLANGAVGEVVHMQWAEGQTPPQL 278
BLAST of mRNA_P-littoralis_Contig102.82.1 vs. uniprot
Match: A0A6H5K558_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K558_9PHAE) HSP 1 Score: 338 bits (867), Expect = 1.440e-105 Identity = 180/276 (65.22%), Postives = 209/276 (75.72%), Query Frame = 1
Query: 1 TIHSGFCIPV-QNSRDSHPSQ------GDLQPRIIGVDFILVDEFSMVGKDMLGLMSAQGRQAVEERSREPSRGFHLDVFGGLGNILVGDRAQLSPVGASSLWCPTPLSRGLCVQELRAWLAMNNAVELTQVISQLSPEQAASRDALLRITEGTQTEDDWNLLK*RFTNTVGAAERDCFDTAVHIFPTNTKADERNRCRLNSIGTLIVRIDASHNVRGYQAVPADRVRDLQPNISLAVGARVFINNNVWVSAGLANGAIGEMVHMQLAEGKAPPQL 807
TIH GF IPV Q++R S PS+ DLQ R+ VDFILVDEFSMVG+DMLGLMSA+G+QAVE R + F DVFGGL ILVGD AQL PVGAS LW P + GL +Q L+AWL+MNNAVELTQV+ Q PEQAA RD LLRI EG QT DDW++LK RF VGAAER+ FD AVHIFPTN AD+ N RLNS+GT I RI+A+H + GY AV ++R R LQ +I LA+GARVF+NNNVWVSAGLANGA+GE+VHMQ AEG+ PPQL
Sbjct: 407 TIHGGFRIPVVQSNRSSDPSRMTEAALRDLQERMAEVDFILVDEFSMVGQDMLGLMSARGKQAVEGRRGDGIEDFRQDVFGGLSIILVGDPAQLPPVGASPLWKHNPSTGGLSMQGLQAWLSMNNAVELTQVMRQQGPEQAAFRDTLLRIAEGMQTADDWDVLKRRFIAAVGAAERETFDDAVHIFPTNALADDWNWRRLNSLGTPIARINATHTIHGYNAVSSERFRGLQSHIFLAIGARVFVNNNVWVSAGLANGAVGEVVHMQWAEGQTPPQL 682
BLAST of mRNA_P-littoralis_Contig102.82.1 vs. uniprot
Match: A0A6H5KFJ0_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFJ0_9PHAE) HSP 1 Score: 338 bits (867), Expect = 2.190e-103 Identity = 180/276 (65.22%), Postives = 209/276 (75.72%), Query Frame = 1
Query: 1 TIHSGFCIPV-QNSRDSHPSQ------GDLQPRIIGVDFILVDEFSMVGKDMLGLMSAQGRQAVEERSREPSRGFHLDVFGGLGNILVGDRAQLSPVGASSLWCPTPLSRGLCVQELRAWLAMNNAVELTQVISQLSPEQAASRDALLRITEGTQTEDDWNLLK*RFTNTVGAAERDCFDTAVHIFPTNTKADERNRCRLNSIGTLIVRIDASHNVRGYQAVPADRVRDLQPNISLAVGARVFINNNVWVSAGLANGAIGEMVHMQLAEGKAPPQL 807
TIH GF IPV Q++R S PS+ DLQ R+ VDFILVDEFSMVG+DMLGLMSA+G+QAVE R + F DVFGGL ILVGD AQL PVGAS LW P + GL +Q L+AWL+MNNAVELTQV+ Q PEQAA RD LLRI EG QT DDW++LK RF VGAAER+ FD AVHIFPTN AD+ N RLNS+GT I RI+A+H + GY AV ++R R LQ +I LA+GARVF+NNNVWVSAGLANGA+GE+VHMQ AEG+ PPQL
Sbjct: 1148 TIHGGFRIPVVQSNRSSDPSRMTEAALRDLQERMAEVDFILVDEFSMVGQDMLGLMSARGKQAVEGRRGDGIEDFRQDVFGGLSIILVGDPAQLPPVGASPLWKHNPSTGGLSMQGLQAWLSMNNAVELTQVMRQQGPEQAAFRDTLLRIAEGMQTADDWDVLKRRFIAAVGAAERETFDDAVHIFPTNALADDWNWRRLNSLGTPIARINATHTIHGYNAVSSERFRGLQSHIFLAIGARVFVNNNVWVSAGLANGAVGEVVHMQWAEGQTPPQL 1423
BLAST of mRNA_P-littoralis_Contig102.82.1 vs. uniprot
Match: A0A6H5K692_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K692_9PHAE) HSP 1 Score: 280 bits (716), Expect = 1.400e-82 Identity = 153/275 (55.64%), Postives = 182/275 (66.18%), Query Frame = 1
Query: 1 TIHSGFCIPVQN------SRDSHPSQGDLQPRIIGVDFILVDEFSMVGKDMLGLMSAQGRQAVEERSREPSRGFHLDVFGGLGNILVGDRAQLSPVGASSLWCPTPLSRGLCVQELRAWLAMNNAVELTQVISQLSPEQAASRDALLRITEGTQTEDDWNLLK*RFTNTVGAAERDCFDTAVHIFPTNTKADERNRCRLNSIGTLIVRIDASHNVRGYQAVPADRVRDLQPNISLAVGARVFINNNVWVSAGLANGAIGEMVHMQLAEGKAPPQL 807
TIH+G + VQN S ++ DLQ +I GVDF+LVDEFSM+G+DMLG+MS + +QAVE R HL +FGGL I+VGD QL V S +W P S L Q L AWL MN AV+LTQV+ Q QAA R+ LLRI EG TE DWN L+ RFT V AAER+ FD AVHIFPTN AD+ N RL ++GT I RIDA H++ GY +P+DR R L+ + LAVGARVFINNNVW S GLANGA GE+VHMQ A G PP L
Sbjct: 1218 TIHTGLRVGVQNRPRGDLGEISESARRDLQQKIQGVDFVLVDEFSMIGQDMLGMMSVRLKQAVEGRRTYWVDDRHLGLFGGLCIIMVGDIIQLLTVAQSPMWTSRPQSSALSGQGLYAWLGMNAAVQLTQVMRQQGAAQAAFRETLLRIAEGEATEADWNTLRPRFTTAVDAAERESFDNAVHIFPTNGAADDWNWRRLQALGTPIARIDADHSMHGYAHIPSDRFRGLEGQLFLAVGARVFINNNVWTSGGLANGAAGEVVHMQWAPGTQPPSL 1492
BLAST of mRNA_P-littoralis_Contig102.82.1 vs. uniprot
Match: A0A6H5KDM0_9PHAE (ATP-dependent DNA helicase (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDM0_9PHAE) HSP 1 Score: 228 bits (580), Expect = 2.070e-71 Identity = 125/196 (63.78%), Postives = 142/196 (72.45%), Query Frame = 1
Query: 1 TIHSGFCIPV-QNSRDSHPSQ------GDLQPRIIGVDFILVDEFSMVGKDMLGLMSAQGRQAVEERSREPSRGFHLDVFGGLGNILVGDRAQLSPVGASSLWCPTPLSRGLCVQELRAWLAMNNAVELTQVISQLSPEQAASRDALLRITEGTQTEDDWNLLK*RFTNTVGAAERDCFDTAVHIFPTNTKADERN 567
TIH GF IPV Q++R S PS+ DLQ R+ VDFILVDEFSMVG+DMLGLMSA+G+QAVE R + F DVFGGL ILVGD A L PVGAS LW P + GL +Q L+AWL+MNNAVELTQV+ Q PEQAA RD LLRI EG QT DDW++LK RF VGAAER+ FD AVHIFPTN AD+ N
Sbjct: 27 TIHGGFRIPVVQSNRSSDPSRMTEAALRDLQERMAEVDFILVDEFSMVGQDMLGLMSARGKQAVEGRRGDGIEDFRQDVFGGLSIILVGDPAHLPPVGASPLWKHNPSTGGLSMQGLQAWLSMNNAVELTQVMRQQGPEQAAFRDTLLRIAEGMQTADDWDVLKRRFIAAVGAAERETFDDAVHIFPTNALADDWN 222
BLAST of mRNA_P-littoralis_Contig102.82.1 vs. uniprot
Match: A0A6H5KA18_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA18_9PHAE) HSP 1 Score: 204 bits (519), Expect = 2.240e-57 Identity = 113/182 (62.09%), Postives = 132/182 (72.53%), Query Frame = 1
Query: 1 TIHSGFCIPV-QNSRDSHPSQ------GDLQPRIIGVDFILVDEFSMVGKDMLGLMSAQGRQAVEERSREPSRGFHLDVFGGLGNILVGDRAQLSPVGASSLWCPTPLSRGLCVQELRAWLAMNNAVELTQVISQLSPEQAASRDALLRITEGTQTEDDWNLLK*RFTNTVGAAERDCFDTA 525
TIH GF IPV Q++R S PS+ DLQ R+ VDFILVDEFSMVG+D+LGL+SA+G+QAVE R + F DVFGGL ILVGD AQL PVGAS LW P + GL +Q L+AWL+MNNAVELT+V+ Q PEQAA RD LLRI EG QT DDW++LK RF VGAAER+ FD A
Sbjct: 525 TIHGGFRIPVVQSNRSSDPSRMTEAALRDLQERMAEVDFILVDEFSMVGQDILGLISARGKQAVEGRRGDGIEDFRQDVFGGLSIILVGDPAQLPPVGASPLWKHNPSTGGLSMQGLQAWLSMNNAVELTRVMRQQGPEQAAFRDTLLRIAEGMQTADDWDVLKRRFIAAVGAAERETFDDA 706
BLAST of mRNA_P-littoralis_Contig102.82.1 vs. uniprot
Match: A0A6H5KGT1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGT1_9PHAE) HSP 1 Score: 166 bits (420), Expect = 1.320e-44 Identity = 81/122 (66.39%), Postives = 97/122 (79.51%), Query Frame = 1
Query: 442 QTEDDWNLLK*RFTNTVGAAERDCFDTAVHIFPTNTKADERNRCRLNSIGTLIVRIDASHNVRGYQAVPADRVRDLQPNISLAVGARVFINNNVWVSAGLANGAIGEMVHMQLAEGKAPPQL 807
QT DDW++LK RF VGAAER+ FD AVHIFPTN AD+ N RLNS+GT I RI+A+H + GY AV ++R R LQ +I LA+GARVF+NNN WVSAGLANGA+GE+VHMQ AEG+ PPQL
Sbjct: 2 QTADDWDVLKRRFIAAVGAAERETFDDAVHIFPTNALADDWNWRRLNSLGTPIARINATHTIHGYNAVSSERFRGLQSHIFLAIGARVFVNNNNWVSAGLANGAVGEVVHMQWAEGQTPPQL 123
BLAST of mRNA_P-littoralis_Contig102.82.1 vs. uniprot
Match: A0A6H5KIQ7_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIQ7_9PHAE) HSP 1 Score: 153 bits (386), Expect = 2.010e-38 Identity = 86/138 (62.32%), Postives = 99/138 (71.74%), Query Frame = 1
Query: 1 TIHSGFCIPV-QNSRDSHPSQ------GDLQPRIIGVDFILVDEFSMVGKDMLGLMSAQGRQAVEERSREPSRGFHLDVFGGLGNILVGDRAQLSPVGASSLWCPTPLSRGLCVQELRAWLAMNNAVELTQVISQLSP 393
TIH GF IPV Q++R S PS+ DLQ R+ VDFILVDEFSMVG+DMLGLMSA+G+QAVE R + F DVFGGL ILVGD AQL PVGAS LW P + GL +Q L+AWL+MNNAVELTQV+ Q P
Sbjct: 836 TIHGGFRIPVVQSNRSSDPSRMTEAALRDLQERMAEVDFILVDEFSMVGQDMLGLMSARGKQAVEGRRGDGIEDFRQDVFGGLSIILVGDPAQLPPVGASPLWKHNPSTGGLSMQGLQAWLSMNNAVELTQVMRQQGP 973
BLAST of mRNA_P-littoralis_Contig102.82.1 vs. uniprot
Match: A0A6J1SN02_FRAOC (ATP-dependent DNA helicase n=1 Tax=Frankliniella occidentalis TaxID=133901 RepID=A0A6J1SN02_FRAOC) HSP 1 Score: 130 bits (327), Expect = 4.280e-31 Identity = 92/281 (32.74%), Postives = 142/281 (50.53%), Query Frame = 1
Query: 1 TIHSGFCIPVQNSR-DSHPSQG--DLQPRIIGVDFILVDEFSMVGKDMLGLMSAQGRQAVEERSREPSRGFHLDVFGGLGNILVGDRAQLSPVGASSLWCPTPLSRG--------LCVQELRAWLAMNNAVELTQVISQLSPEQAAS--RDALLRITEGTQTEDDWNLLK*RFTNTVGAAERDCFDTAVHIFPTNTKADERNRCRLNSIGTLIVRIDASHNVRGYQAVPADRVRDLQPNISLAVGARVFINNNVWVSAGLANGAIGEMVHMQLAEGKAPPQ 804
TI+S IPV+ + P++ Q + V F+++DE+SMVG +LG M + R + + D+F G L+GD QL PVG ++L+ ++ G L + +R + A T V+ +S QA + RDAL R++ GT T+ D+ L + RF V ER+ F AVH++ T E N+ +L + + RI A H+ G AD L+ I LA G+RV + +N+W+ AGL NGA+G +V + KAPP+
Sbjct: 123 TINSALKIPVKVKQYPEMPAEALRKFQDSMSNVKFLIIDEYSMVGSRLLGYMERRCRDGKPDSN---------DIFAGCFTWLIGDIKQLPPVGDATLYPKVNVNNGRRRRQQDCLSAEVIRGRMVF--ASFTTSVVLSVSQRQADNSLRDALDRVSIGTSTDADYQLFRARFKLNVAGEERETFRDAVHLYWTRAAVVEHNKRKLVDLQRPVARIPAKHHGPGAADGSADDAGGLEKVIYLAKGSRVMLRSNLWLRAGLVNGALGTVVDVIYHHDKAPPE 392
BLAST of mRNA_P-littoralis_Contig102.82.1 vs. uniprot
Match: UPI000A2A83DD (uncharacterized protein LOC110235051 n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI000A2A83DD) HSP 1 Score: 131 bits (330), Expect = 6.320e-31 Identity = 92/274 (33.58%), Postives = 139/274 (50.73%), Query Frame = 1
Query: 1 TIHSGFCIPVQ---NSRDSHPSQGDLQPRIIGVDFILVDEFSMVGKDMLGLMSAQGRQAVEERSREPSRGFHLDVFGGLGNILVGDRAQLSPVGASSLWCPTPLSRGLCVQELRAWLAMNNAVELT--QVISQLSPEQAASRDALLRITEGTQTEDDWNLLK*RFTNTVGAAERDCFDTAVHIFPTNTKADERNRCRLNSIGTLIVRIDASHNVRGYQAVPADRVRDLQPNISLAVGARVFINNNVWVSAGLANGAIGEMVHMQLAEGKAPPQL 807
TIHS +PV N S S LQ + +++IL+DE+SM+G+ LG + + +QA + + +FGGL IL+GD QL PV L+ P S + Q A+ + AV+LT Q + S EQ RD LLR+ +G T++DW LL R +V F+ A +F +N + N +LN + I+A H+ + +P+D + L+P + LA GA+V + N+W S GL NGA G ++ + G PP L
Sbjct: 998 TIHSLLKLPVGPRGNKELSGQSLSRLQDNLKDIEYILIDEYSMLGQTTLGWIDKRCKQA---------KAIYNRIFGGLSVILIGDPGQLPPVADKPLYHAQP-SNPIGEQGYLAYKMFDMAVKLTVNQRVHGTSYEQQQFRDLLLRLRKGESTKEDWQLLLTRQPCSVENIAD--FNNATRLFYSNDEVSSYNHEQLNKLQQPCANINARHSSTTAKNLPSDELSGLEPVLYLAKGAKVMLTMNLWASVGLCNGATGTVIDIIYELGHMPPDL 1259 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig102.82.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig102.82.1 >prot_P-littoralis_Contig102.82.1 ID=prot_P-littoralis_Contig102.82.1|Name=mRNA_P-littoralis_Contig102.82.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=119bp MVGKDMLGLMSAQGRQAVEERSREPSRGFHLDVFGGLGNILVGDRAQLSPback to top mRNA from alignment at P-littoralis_Contig102:400394..401200- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig102.82.1 ID=mRNA_P-littoralis_Contig102.82.1|Name=mRNA_P-littoralis_Contig102.82.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=807bp|location=Sequence derived from alignment at P-littoralis_Contig102:400394..401200- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig102:400394..401200- >mRNA_P-littoralis_Contig102.82.1 ID=mRNA_P-littoralis_Contig102.82.1|Name=mRNA_P-littoralis_Contig102.82.1|organism=Pylaiella littoralis U1_48|type=CDS|length=357bp|location=Sequence derived from alignment at P-littoralis_Contig102:400394..401200- (Pylaiella littoralis U1_48)back to top |