mRNA_P-littoralis_Contig102.75.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig102.75.1
Unique NamemRNA_P-littoralis_Contig102.75.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig102.75.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig102contigP-littoralis_Contig102:376580..379463 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2180
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-08_005705.1
Cds size1293
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789357.6999044-UTR-P-littoralis_Contig102:376579..3770731680789357.6999044-UTR-P-littoralis_Contig102:376579..377073Pylaiella littoralis U1_48UTRP-littoralis_Contig102 376580..377073 -
1680789357.7184486-UTR-P-littoralis_Contig102:377777..3778821680789357.7184486-UTR-P-littoralis_Contig102:377777..377882Pylaiella littoralis U1_48UTRP-littoralis_Contig102 377778..377882 -
1680789357.7369213-UTR-P-littoralis_Contig102:379175..3794631680789357.7369213-UTR-P-littoralis_Contig102:379175..379463Pylaiella littoralis U1_48UTRP-littoralis_Contig102 379176..379463 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789357.7285893-CDS-P-littoralis_Contig102:377882..3791751680789357.7285893-CDS-P-littoralis_Contig102:377882..379175Pylaiella littoralis U1_48CDSP-littoralis_Contig102 377883..379175 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig102.75.1prot_P-littoralis_Contig102.75.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig102 377883..379175 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig102.75.1

>prot_P-littoralis_Contig102.75.1 ID=prot_P-littoralis_Contig102.75.1|Name=mRNA_P-littoralis_Contig102.75.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=431bp
MGVKKCNHQPCERAANFGMVDSTKAEFCAQHAKDGMVNVRRKSCAHQGCL
KLPSFAASGTKKPEFCSRHAKPGMMNVRSQKCRNPDCTKVPTYGVEGSRK
TQFCAQHAEIGMVNVKNQKCVHPRCSKQPSYGWDGGGTGNSVGPGTKRGK
AEFCAEHSKEGMVDVVSKRCAHPGCSTQPVFGPKESRVRKLCARHAEEGM
VVLTGRGSSSSSASGTGHNGRHTCLAFSAVGAGVGQQRKGGRAFPSPSVL
MAANEEHWGASLGVGAPPAIKRVRTADGAPGAGALCFEVTAAAAASIVGT
QHLTPDPSITLPVTAAAATTPTTAAATAATATAAATAASTATATAATAAT
AATATAAIETITPSAVAAEAASAGECTAAETEAARTATPTGATTATVAAA
TAAAAAATLATTGIMGSGTPSPAGCPSHAI*
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mRNA from alignment at P-littoralis_Contig102:376580..379463-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig102.75.1 ID=mRNA_P-littoralis_Contig102.75.1|Name=mRNA_P-littoralis_Contig102.75.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2884bp|location=Sequence derived from alignment at P-littoralis_Contig102:376580..379463- (Pylaiella littoralis U1_48)
CAAGAATAAATAACCTTGTCATCTACCATTGACCGAAACCACCCACCCCA
TCGCACAGCGCAAGCCATCGTACAGCGCAAGCGAAAACAACCACACGCGA
CGCATTTCAGCAATTGATCTTCCCCACCAGCACCCCACGTGAAGTGGTTG
GACCTAGAGAATAACGTGCAGAGCAGTTTAGGCCAGTTTGTGGGACCTTT
GTCTCGTATATCGCGAGTGAGTTTGGTTCGTAATCTTGCCTCGAAACCGA
GACGTTCGAGGGAAACCGAAGCAGGGAAAAGAAAGGAGATGGGGGTCAAG
AAGTGCAACCACCAACCGTGCGAACGCGCGGCGAACTTTGGCATGGTCGA
CAGCACAAAGGCGGAGTTCTGTGCCCAGCACGCCAAGGATGGCATGGTGA
ACGTCCGCCGCAAGAGCTGCGCGCACCAAGGTTGCCTCAAGCTGCCTTCG
TTTGCCGCGTCGGGCACCAAGAAGCCAGAGTTCTGTTCCCGCCACGCCAA
GCCCGGGATGATGAACGTGCGCAGCCAAAAGTGTCGCAACCCAGACTGCA
CGAAAGTGCCGACGTACGGCGTGGAGGGCAGCAGAAAGACGCAATTCTGT
GCTCAGCACGCCGAGATTGGCATGGTGAACGTGAAAAACCAGAAATGTGT
TCACCCGCGGTGCTCCAAGCAACCATCGTACGGCTGGGACGGCGGCGGAA
CCGGCAACAGCGTAGGCCCCGGCACCAAGAGAGGAAAAGCGGAGTTCTGC
GCGGAACATTCGAAAGAAGGGATGGTCGACGTCGTTAGCAAGAGGTGCGC
CCACCCGGGCTGCTCCACGCAGCCAGTTTTCGGGCCGAAAGAGAGCCGGG
TCCGGAAATTGTGCGCTAGACACGCCGAGGAGGGCATGGTTGTACTCACC
GGCCGCGGCAGCAGCAGCAGCAGTGCCAGCGGCACCGGCCACAACGGGCG
TCATACTTGCCTCGCCTTCAGTGCTGTTGGTGCGGGTGTAGGGCAGCAGC
GAAAGGGTGGCCGTGCCTTTCCGTCGCCGTCCGTTCTCATGGCGGCGAAC
GAGGAACACTGGGGGGCTTCCTTAGGCGTAGGCGCACCACCAGCTATCAA
GCGGGTCCGTACCGCCGATGGCGCCCCTGGAGCTGGGGCGTTGTGCTTCG
AAGTGACGGCAGCGGCGGCGGCCTCTATAGTAGGTACTCAACACTTGACC
CCCGACCCATCGATAACTTTGCCTGTGACAGCAGCAGCAGCTACTACACC
AACAACAGCAGCAGCTACAGCAGCGACAGCAACAGCAGCGGCAACAGCAG
CATCAACAGCAACGGCAACAGCAGCAACAGCGGCGACAGCAGCAACAGCG
ACTGCCGCAATCGAGACGATAACGCCATCAGCAGTGGCAGCAGAGGCAGC
ATCAGCGGGAGAATGTACAGCAGCAGAAACAGAGGCAGCAAGAACGGCGA
CACCAACAGGGGCAACAACGGCAACAGTGGCAGCAGCAACAGCTGCAGCG
GCGGCGGCAACGTTAGCAACAACCGGCATCATGGGCTCCGGAACGCCCTC
TCCTGCGGGGTGCCCCTCACACGCGATCTGAAACTTCGAAGTCTAACCGT
ACCTCCTCGGAGGTGGAAAGGGACGGAGGCGGGTTCACGGTCTTGATGGG
CGCGGTGGGGGAGAGGAACTGGAGCTGCAGGTTAAGGTGCGTAGAAATCG
ATTTTTTTTTTATATGATAGCGGTGCAGATCAGAGCTTTGTTTCTAGGGC
CACAGTCAAGTCCACACGCCACCCCCACTCTCTACGAAAGCATTTTGCTG
GCTAATCATCGTAATCGTAACCCCCAGGCAGGAACCGCACAAGATTTGGT
TTGGGACGCCTGGAGAAAAGGAATTTATCCGTGTGACCCATCTGACTCGG
AGCAAACAGAGACTGAGATGCGTTCATCGTAGTGAAAGGACCGTGGGATA
GGCAGGGCAACGAGCGAGAGACGGGAATTAAACGGGGATGTTTGTCAACA
TTGAGCATTGAGCGCGCATGCCAAAAGAACGACAACGTCGGGCCGGACGC
GTCGTGTTCGGCTGGCTAGGTTGCGATGAGGGTGTTCGATTTCTCCCCTT
CGTGCGTGTTGTTGATGGCCGACCCTGTGGGATGTTGAATGCTCGTTATG
GGTGAGGGTTCACGGTAGGCTAGCATTGTTTGTGGTCTTCCCTCCGAATC
AAACATGGGACAGCAGCGTGTACTTCAAACCCGTTCCAACAGAGCGGCAA
ATGGCTGAGCAACATCTATGCTGCACCGAGCACACGCCCCATTTGCAGAA
GTCAACGGATATTTTGCTCCACCAGGTCACTTGTGTATACGACTGTTGTT
ATCCCCGGTGTTTGCAATCGCTGTCTCTTGCGTTGAGCAGTTCTGGGCCA
TGGACCGGACAGTCCGTCGAGCGTGAGACACGGGGGAGGGAGCCTCAAGC
ATGCAACGCCCCCCCTCGTTTTCCAGCCGTTCTCACCGAGGCGTGCTTAG
CCTTCTGAACTGGCCACCTGCTAAGCATGAAGGGCAGACGGAGATCAAAT
AGCATTGGTGTACACGGCGAGGTGCTTTTGTAGGCGCTCCGGTATTCGCA
ACCCTGGTTGAATCATCGAATATCAAACGATGAATTTTCGAACTACCTGG
AAAATGCCTTCGTGTGAAAGGCTCAACCAACCCGTACAACAAGCGCATAA
AATTCCCTAGTTTCCCACGAATAGGTGTACCGAGTCTCCATCTCAGTGCA
TGACCAAGACCGCACTAAGAGAACGAGGTACCTAGAGGAATATTTTCTAT
CCAAGCGGAGTGACGAATGTGTATGAAGTACCCCCATATCCCCAAAGCAA
GGGCAACGGGCGGAATAAACAACCCTGAAAAAAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig102:376580..379463-

>mRNA_P-littoralis_Contig102.75.1 ID=mRNA_P-littoralis_Contig102.75.1|Name=mRNA_P-littoralis_Contig102.75.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1293bp|location=Sequence derived from alignment at P-littoralis_Contig102:376580..379463- (Pylaiella littoralis U1_48)
ATGGGGGTCAAGAAGTGCAACCACCAACCGTGCGAACGCGCGGCGAACTT
TGGCATGGTCGACAGCACAAAGGCGGAGTTCTGTGCCCAGCACGCCAAGG
ATGGCATGGTGAACGTCCGCCGCAAGAGCTGCGCGCACCAAGGTTGCCTC
AAGCTGCCTTCGTTTGCCGCGTCGGGCACCAAGAAGCCAGAGTTCTGTTC
CCGCCACGCCAAGCCCGGGATGATGAACGTGCGCAGCCAAAAGTGTCGCA
ACCCAGACTGCACGAAAGTGCCGACGTACGGCGTGGAGGGCAGCAGAAAG
ACGCAATTCTGTGCTCAGCACGCCGAGATTGGCATGGTGAACGTGAAAAA
CCAGAAATGTGTTCACCCGCGGTGCTCCAAGCAACCATCGTACGGCTGGG
ACGGCGGCGGAACCGGCAACAGCGTAGGCCCCGGCACCAAGAGAGGAAAA
GCGGAGTTCTGCGCGGAACATTCGAAAGAAGGGATGGTCGACGTCGTTAG
CAAGAGGTGCGCCCACCCGGGCTGCTCCACGCAGCCAGTTTTCGGGCCGA
AAGAGAGCCGGGTCCGGAAATTGTGCGCTAGACACGCCGAGGAGGGCATG
GTTGTACTCACCGGCCGCGGCAGCAGCAGCAGCAGTGCCAGCGGCACCGG
CCACAACGGGCGTCATACTTGCCTCGCCTTCAGTGCTGTTGGTGCGGGTG
TAGGGCAGCAGCGAAAGGGTGGCCGTGCCTTTCCGTCGCCGTCCGTTCTC
ATGGCGGCGAACGAGGAACACTGGGGGGCTTCCTTAGGCGTAGGCGCACC
ACCAGCTATCAAGCGGGTCCGTACCGCCGATGGCGCCCCTGGAGCTGGGG
CGTTGTGCTTCGAAGTGACGGCAGCGGCGGCGGCCTCTATAGTAGGTACT
CAACACTTGACCCCCGACCCATCGATAACTTTGCCTGTGACAGCAGCAGC
AGCTACTACACCAACAACAGCAGCAGCTACAGCAGCGACAGCAACAGCAG
CGGCAACAGCAGCATCAACAGCAACGGCAACAGCAGCAACAGCGGCGACA
GCAGCAACAGCGACTGCCGCAATCGAGACGATAACGCCATCAGCAGTGGC
AGCAGAGGCAGCATCAGCGGGAGAATGTACAGCAGCAGAAACAGAGGCAG
CAAGAACGGCGACACCAACAGGGGCAACAACGGCAACAGTGGCAGCAGCA
ACAGCTGCAGCGGCGGCGGCAACGTTAGCAACAACCGGCATCATGGGCTC
CGGAACGCCCTCTCCTGCGGGGTGCCCCTCACACGCGATCTGA
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