mRNA_P-littoralis_Contig102.7.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig102.7.1
Unique NamemRNA_P-littoralis_Contig102.7.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig102.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig102contigP-littoralis_Contig102:12084..18228 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size333
Hectar predicted targeting categoryother localisation
Exons3
Cds size333
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789357.4504755-CDS-P-littoralis_Contig102:12083..122161680789357.4504755-CDS-P-littoralis_Contig102:12083..12216Pylaiella littoralis U1_48CDSP-littoralis_Contig102 12084..12216 +
1680789357.4617393-CDS-P-littoralis_Contig102:12536..126521680789357.4617393-CDS-P-littoralis_Contig102:12536..12652Pylaiella littoralis U1_48CDSP-littoralis_Contig102 12537..12652 +
1680789357.4747925-CDS-P-littoralis_Contig102:18144..182281680789357.4747925-CDS-P-littoralis_Contig102:18144..18228Pylaiella littoralis U1_48CDSP-littoralis_Contig102 18145..18228 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig102.7.1prot_P-littoralis_Contig102.7.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig102 12084..18228 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig102.7.1

>prot_P-littoralis_Contig102.7.1 ID=prot_P-littoralis_Contig102.7.1|Name=mRNA_P-littoralis_Contig102.7.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=111bp
QHKLPTCQFLFSSSPSLRLVSVRELSLCLREGRERRLGGESCGCAHTAVS
LVPSRGTHANPSRQAPWETNRAPTPDTIHDTEQAGDRVEARREGGDSVVK
LYKWGATCPR*
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mRNA from alignment at P-littoralis_Contig102:12084..18228+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig102.7.1 ID=mRNA_P-littoralis_Contig102.7.1|Name=mRNA_P-littoralis_Contig102.7.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=6145bp|location=Sequence derived from alignment at P-littoralis_Contig102:12084..18228+ (Pylaiella littoralis U1_48)
CAGCACAAGCTCCCTACCTGTCAGTTCCTCTTCTCGTCCTCGCCGTCGCT
TCGACTCGTCTCCGTGCGCGAGTTGTCTCTCTGCTTAAGAGAGGGAAGAG
AGAGAAGACTGGGAGGGGAGAGCTGTGGATGCGGTGAGGTTGCGCGTCAT
AAAAAAAATCGAGAAATGTTGGTTTGCACCACATCACGGTTTACAGCGGC
ATCACGGTTTAGACCAGATCACGGTATGGGATATTTGGCGATGTTGTTGT
TGATTCTCACATTTAGTTCGTAGCCTATGGGATGTAAAAAAATATACTGA
ATAAAGTATGGAAATGGCGAAATATCTGATGGATCTTATTGGCTGACACA
TGGTTGAGAGGTCGCCATCTCATTGGCCACCCGTGCGGCCCTGTCGTGGT
CAAACCTCGTTGTGTGTTGTGTGTTGCGCCAAACCGTCGCCAACACCCTA
CAGCACACACAGCAGTTTCACTGGTGCCCTCCAGAGGCACACACGCCAAC
CCCTCCAGGCAGGCGCCATGGGAGACGAATCGAGCCCCGACCCCTGATAC
AATACACGACACAGAACAGGTGAGGCCCAGGTGGGACAAGCTGCAGTCGT
AACGGCCTAAGTACTTCGAAGTATATGGTTATGGTTGAGGTTTGTCTTGG
TTATTTTTTGTTTGTCGGACTGTTTCCAATTTTTGTTTTTCTTTCGAGCC
TGTGATTTTTTTCTGCATTTGTTTGGTATTCTGGCCACCACAGATGGTAC
CCCAACGGTACCATATCTGACTTGACTGTGTGTGGGTGATCATAGTCCAT
ATATTTTATTTTTTTATTTTTTCCTCCTAGCACGATATGTGCCTGGTTTG
TGACCACGGGCTAGACTGCGGCGGTAGTGAGCTAATGTGAGAATCAACAA
CAACACGTAGCGCCGCACGGGAATACATGTGTTTGTGTACGAGTGCATTC
CCTCAGTCTTTGTGCCCTCCCTGTATCTTCTTCTTTTTTATTTTTTTGTC
TTTCGTCTATTGATCATATAGCTACTGGACCATCGCCCTGGTTTGCCTTT
GCCTTGGTCTGTCATGGCCCTGGGCCCTGGTTCGATGTACGAAGTACTTC
GAAGTATATGGTTATGGTTGAGGTCTGTCTTGGTTATTTTTTGTTTGTCG
TACTCTTTTTTTAAAAACTTACAAAAACATCAATTTGTTCGCCTCTCTCC
AGACAAGGATCTGGAGCAGATATTGCAACGAACACAAAGAGCGAAATACG
TCTACCAGTGTTTCTATACTCAACAACCAGTGTTGTTGTTGATTCTCACA
TTAGCTCACTACCGCCGCAGTCTAGCCCGTGGTCACAAACCAGGCACATA
TCGTGCTAGGAGGAAAAATAAAAAATAAAATATATGGACTATGATCACCC
ACAGTCAAATCAGATATGGTACCGTTGGGGTACCATCTGTGGTGGCCAGA
ATACCAAACAAATACAGAAAAAAAATAACAGGCTCGAAAGAAAAACAAAA
ATTGGAAACAGTCCGACAAACAAAAAATAACCAAGACAAACCTCAACCAT
AACCATATACTTCGGAGTACTTCGGACATCGAACCAGGGCCCAGGGCCAT
GACAGACCAAGGCAAACGCAAACCAGGGCGATGGTCCAGTAACTACATGA
TCAACAGACCAAAGACAAAAAATAAAATAAAATAAAAAGAAGAAAGATAC
TGGGAGGGCACAAAGACTGAGGGAGTGCATTCGTAGACAAACACAACAAA
CAGGCCGCCAAACAAAGAGGAAGCAGGGAACGAAAAGGGAAAAGAAGACC
GGAAGTACCGGAAAAACAAGTGTACCGTTGCAGCTCCCCTGAGGGTATCA
GGCTCAACAAGACAATTTGGTGGTCGTCTTGTGTGACTCTTTCCAATTTT
TGTTTTTTCTTTCGAACCTGTTATTTTTTTTTCTGTATTTTGTTTGGTAC
TTTGGCCACCACAGATGGTACCCCAACGGTACCATATCTGATTTGACTGT
GGGTGATCATAGTCCATTTATTTTATTTTATGTTTTTCCTCCTAGCACGA
TATGTGCCTGGTTTGTGACCACGGGCTAGACTGCGGCGGTAGTGAGCTAA
TGTGAGAATCAACAACAACAACACTCCACACCCCACACCCCACAAACGAC
ACCTATCACACAGCAACCGACGTCGCAGCAGGGCCAGGAGTATAATGATA
CGCTTCAGCAGCAGCAGCAGCAATGCTGCCAGAAACATGGCAACTGCAGC
AACAGCAGACATACGATAGCAACCGCAACAGCAAAAGTGCAAGCAAAATG
CGTCCCAAGCCTGATAATCGCAGCAAAATCAGCACCAGCAGCAGTAAGGC
TGAATCTTATGGCACACCGATTTTGAGACACAGGTTTCCAAACCTCGTTG
GGCCAAAATCGGTGGGCCCACAGACTGACTGTGTGTCTTAATTAAGGGAC
ACACCGTTTTTGATAATCAAGGGTGTCGATTTCAGCCCTGGTTTTCAGCG
TCCTCCAGAAGCGTTTTGCATCAGGGACATGATTTAACAGAGAACAGGCC
GCACCGCGCACCGCACACCACATAGATGTTGGTCGCTGACACTGACACGG
AGAGAACACCTATGCTCTTGTTGTTTTCAGCGTCCTCCATCACGGGTCGG
GTGTGGGGTTTGGTTGCGGTTTGGGTTTGGTGTTGTGCGCTTGTCACGAA
TGCAATCAACAACAACAGAACAAAGAATAAATACAGCAACAGTAGCTCGG
GGATCGATGCGGTGCGACCCCGCTATGTTGGTAGAATCGTCAAAACTCAA
ATCTCGTGGGTCAGATCTCGTGCGTGGAGACACACGAGATTTGGGCCCAA
AACCGGTGGGACTGGCTCCCCGACTTTCGTTCACAGGTTTTCAAACCTCG
TTTTGCCCAAAATCTGTATCCATAAGGTGGACCAATTTTTTTTTCAACGA
GGTTTGAAAACCTGTGGCTCAAAACCGGTGTGCCATAAGATTCAGCCTAA
GCACCAGCATCAGTAGCAGCAGGAGCGTATGGGTGATAGAGGGGTTCTTG
TCACTAAACGATCTGCCCGGGGCTGTGGACGCTCCGGCTGCGAGGCGAGG
AAAGTTTCCTGCGGCGGTAGGTGTAGATCAATAGCCGCACCCAGGACGCA
ATTCCGTCTCTGATTCTCCGACCACTGCACTTGAAGTAATGCTCGCAGGG
TGGAAAGCGATTAATTCGTGAGTATACAAAATTCGATTTAATTATCGATG
AGGGAAAGGCTACATCTTATGTGTCAGAACCGTTCATATATTTTTATTTT
ATTCGGCTGTTTTGAACATTGGCCCAAAACGGAGAATCTTATTTGATCAG
AAACAGCCATTTTAGACATCGACTTTTCGAATAAATTTTTCCGATAGCCC
CAAACGATCAGAAAAAGTATTTTTTTTCTGATAGCCTGCAGCTATCGGAA
ACCTGTTTTTTTTTTTGGGTCAAGGAGTTTGAACAACCCAAGTTGCAGTA
GCCTTGCATGATGAGATGACCTGAAAACTTTGTTTTGGTAGCCCATCGGT
TCTGATGACCGACGCAGGAGAATGGCCATACATACACCTCACGGCCGATG
GCTTTAGTATTGCTGTGGGTTCTTTCGTTCGAGAGCGATGGACCAATAAC
CAAAATTGATCGGACGAGAGCTGGCAGCTAGCTGATGCTGCTGCTCGTGT
CCTCTGAACTCTTCAACCAGTAGCAGGTTTTTTGCCGCCACACCAGTTTG
TTTTTTTGTTGATTGCTCTCGAACGAATGAAGCCACAGCAATGACAAAGC
CATGCCTCGCGAGCTGTGAACATGGTCTCTCTCCTCCGGTGGTCCTCTGA
AGCAGCGAGGCATCGATAGACTGGCGTAGAAGGATTGCAGGAATTGATGG
CCAGTGGAAAAAAGAAGAAATCACCACACCACCTTCTTGCTGGTGGTGAG
CTGCATCGATTTTTTTCGTTTCTTCACACGTCATCGGTGATACCTGCAAC
CTTTTTTCGCTAGTAGTCTATCGATACCTCGCGGTCTTATATAGCTACGG
GAGAAGAAGGACCATATACCCAGCTCGCGCGGCATGTCCTTACCATCACC
GTGGCTTCATTCGTTCGAGAGTGGTGGACGAAAGAGTGAACCGCTTACGG
CAGTGCAAAATGAGAGTCAAGTTGGCTACCATCAAACCGCCCCACCAGCG
GAACAGAGGAGAGACTTTTTGTATTCAGAAGTTTATTAAAAAAAATAAAA
CCACCTGCTGTTCGGTTTTGACACATAGTATCGGGTCCGTCAACAGAGCC
TGTTGGAAACGTTATTATTCGAACGGCCCAAAAGGAATAATAACGATTTT
GACACATAAGATGTAGCCAAAGGGACGGCTGCTCCCTTTCTCGCGATAAA
AAATATGGCAAGCACCGCAGTGGGAAGTGGAGAAAAAAAAAAAACTCCTG
TGTTGACTTTCTACTCTGTGACCCCGGTTGGAGCGTCTACCTACCCGAAA
GGAGTAGAGTGGCGTCCAATGAAAGGGATGACAACACACACACACACACA
CTCCCACGCACTGCCTCCTGTGACTCGTACCACCGCACACTCTTGCTTCA
GCCCTAAAAAAAAAGACTCCTGTGTGACCCCGGCTGGGCCGACTTACACC
GGAAGGTGTAGACTGGTGCCCGGAATAGATGGGACGAAAACACACACACA
CACTAACAATCTTTGTGTTTTCCTTTTACCTTGTTTTACCTTGGTAGCTG
GGTCGATGGGAGCTGCGACCTCTCGAGGCATGACCTCAGCACCTGACGCC
TGATTTTTATTTGATTTTGTTTTCCAGTTTTGGTTCTATGTAGCGTTGCG
TGACCTCCGGGTCCGTTTCATTTGGTCGGATTTTCCGTGTTATACCTTTT
TTGGGTAGGTAGCCTGTGACCACGGAAAGCGTCCCATTCGGATGAGTCTG
CCGTACGGATATTAGAAGGTACTGGGTAGAGATGCGGAGGTTTCGGAACG
GTTTTTAATGTGAAGACAACACACACACACTAAAAATAAAAAAATAAACA
ATCCTGTGTGTTGACCTTCCTCCTGTGTGACCCCGGCTGGTGTGTGTGTG
TGTGTGTTGTCTTCACATTACCCCGGCTGGTACGTGAAGATATACCGAAA
TGTGTAGACTGGCGTCCAGAATAGATGGGATGACAACACACACACACACG
AACTACCGCAGGTCTCCATTCGACTACAACGTCAAGTACATCAGCCCCAC
AGTCCCCCCCGTCCCACTACAGTAGCCACTCCTGGCTGCAGACAGCAGCA
GTAACTGTTGCTGTCTGGAGTGCTGCCTGCAACGTGCAATAGGCCCGGTA
ATCGGAAAAGCAGAACAACAGAGAAGACAAATAAATGATGATGTCTGGAG
TGCTGCCAAAATGACGACCCGCAGGCAGTGTAGTAAAAAAGTGTAAGATT
GAACGAAGTAAATCTGGGGTTGGACGTACGGAAGTAAAGGAGGCAGGCTC
AGCGAGGGGAAAGGCAATGGGAAGGAGAGAGACGGAGATCAGTCACACAG
GCGTTGCAGCCCACAGGGAAAAAACAGTTTGTTTTTATGCAGACAAAACA
AAATGCTGGAATCACAACACGCGGGGTTGTTCCGCGCCCAAAATTACACC
AACCCACCTCCATCCCTGGAGATTCCTGGGCGATTTGGGCCATTCTATCG
ATGTGTAACATTGGCGTGAAAGTTGCCTCCCGAGACCGGCAAGGGTCACA
TGAATCAGCAGCAAACGGTTTGAATTCAGATGTGATAGCGCAGCTTTTCT
CTCTTTCGAAGCAAAATCAAAGCGTATCAACAGCTTCAGGGTGGAGGGTG
TTGCTTGAGCTGTCTCTCTACTTTCGTGGCGACCCTTGGTCTGTGCGAGG
AGTACGAGGTGATGACCAAGTGGGTCCAGCATGCTCAAAATTGGGGACGG
GCTGGAACAAACTATTTTCCCGCTTGAGCCAACACGCCTCCGATTGTGTC
TCCACTTTTTTTTCGTTTCCTATGGGCTGCAACACCTGTGGTCTGTTGGG
GTCACGGGCAGGCGGGAGACCGAGTCGAGGCTAGAAGAGAGGGGGGGGAT
AGCGTGGTGAAGCTATACAAGTGGGGGGCAACATGTCCACGATAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig102:12084..18228+

>mRNA_P-littoralis_Contig102.7.1 ID=mRNA_P-littoralis_Contig102.7.1|Name=mRNA_P-littoralis_Contig102.7.1|organism=Pylaiella littoralis U1_48|type=CDS|length=333bp|location=Sequence derived from alignment at P-littoralis_Contig102:12084..18228+ (Pylaiella littoralis U1_48)
CAGCACAAGCTCCCTACCTGTCAGTTCCTCTTCTCGTCCTCGCCGTCGCT
TCGACTCGTCTCCGTGCGCGAGTTGTCTCTCTGCTTAAGAGAGGGAAGAG
AGAGAAGACTGGGAGGGGAGAGCTGTGGATGCGCACACACAGCAGTTTCA
CTGGTGCCCTCCAGAGGCACACACGCCAACCCCTCCAGGCAGGCGCCATG
GGAGACGAATCGAGCCCCGACCCCTGATACAATACACGACACAGAACAGG
CGGGAGACCGAGTCGAGGCTAGAAGAGAGGGGGGGGATAGCGTGGTGAAG
CTATACAAGTGGGGGGCAACATGTCCACGATAG
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