mRNA_P-littoralis_Contig102.40.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig102.40.1
Unique NamemRNA_P-littoralis_Contig102.40.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig102.40.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig102contigP-littoralis_Contig102:230065..234353 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size266
Hectar predicted targeting categoryother localisation
Exons2
Cds size264
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789357.506311-CDS-P-littoralis_Contig102:230064..2302061680789357.506311-CDS-P-littoralis_Contig102:230064..230206Pylaiella littoralis U1_48CDSP-littoralis_Contig102 230065..230206 -
1680789357.5148814-CDS-P-littoralis_Contig102:234231..2343531680789357.5148814-CDS-P-littoralis_Contig102:234231..234353Pylaiella littoralis U1_48CDSP-littoralis_Contig102 234232..234353 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig102.40.1prot_P-littoralis_Contig102.40.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig102 230065..234353 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig102.40.1

>prot_P-littoralis_Contig102.40.1 ID=prot_P-littoralis_Contig102.40.1|Name=mRNA_P-littoralis_Contig102.40.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=88bp
MQGCVWTLPACLLSEWCVRETAYGKKKKTSLKGGRAVACSRSTKIRLTVQ
QAASLALLLLFAASARGNKSGGVAAHAVTGDPARRRRT
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mRNA from alignment at P-littoralis_Contig102:230065..234353-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig102.40.1 ID=mRNA_P-littoralis_Contig102.40.1|Name=mRNA_P-littoralis_Contig102.40.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=4289bp|location=Sequence derived from alignment at P-littoralis_Contig102:230065..234353- (Pylaiella littoralis U1_48)
ATGCAGGGTTGTGTGTGGACGCTACCAGCTTGCTTGCTATCTGAATGGTG
TGTGAGGGAGACAGCTTACGGAAAAAAGAAGAAGACAAGCCTGAAGGGGG
GCAGGGCGGTGGCCTGCTCAAGGTGCGTTCCCATCTACGATGCGCAGGGA
AAATGAACAAAGAAATGTCCAAAATTGGATGGGTTGACTTCCTGTCTGAA
CGTCTGAACTACCGGTGTGTTTCACCTCGTTATGTCTTGAGAGCAAAGTT
TTCACACAGCGTATACAAACAGAGAGAGACTGATGGAGAGAGAAAGAGAC
AGTGAAAGAGCCACTGGAAGGCGCTTACTGTACTCTTAAACCAACTATGT
GGCCACCAACCGGCAGGAATAGCTACAAAAACGTAGCTTAGCTGGCACCC
TCATACTCGTCGGGCCCAGTGCAAGCCGAATGGATGGGCGAGGGTCACGC
TGATGATTTCCATCGTCTACGGTACACAGCTGTAAATAACAGATGTTGTT
GATTCTCACATTACAGCAGTAGTAGCTCATCGCCAAAATCTAGCCCGTGG
TCACAAAAAGTCCTGAGCCCCACAGTAGGAAGATAAAAAAAACAGAAAAT
AAACTACCACACTGGTCCGAAATATAGCTGGGATTTGATAATACCGGAAT
ATAGGTGAGATTCTAGTTAAGCACGATGGTAACGATTTCAGCCTGTGAGA
CTCCGCGGCAATAATCCTACAGCCTATTTAAGATTGTCAAAATTGAAATC
CCAACCTTAACAGCGGGGATGAGTCGTTATCAGCCCCCCCCCGATTCTCC
GGACTTTTGTGGTAAGGGAATATTGACATTTTCAACACGCTCGTACGGCT
TCAAAAAAACTCTTTTTTTTTAACCATTTTTTATTGTGTTGTCGGTAGCC
CCCTGGCCTCTTGTACCCACTCTGCCTGCTTTGATTTACCACTGCCAATG
TCTTCAACCGGTGGAAAAAACCAAAACCAAAATAAAGTTTCAACTTTGCG
CGCAAAAAAAAATCGAAAAAAAAAAAAGTGGTCAAAGTTTTAGCAAAAGA
AACGACGTTTCCGGGGCTCGAACCCGCGTCTCAAAATTCGAAGTAAATCC
CGAGATATTTTTCCTTCCCTGAAATCCCAGCTATATTTCGGACCAGAGTT
GTACTTCGAAGTACAAGGGAACACCCAAGAAAGACCGAAGAAGATACTCC
TTCCAACCTGGTGTGCATCACTGAACTACAGCAGTTACAGCAGTACCAAC
AGCAAACGTACTTCCAGCGTCGTTCATTTGACTACAACATCGTGTTCAGT
CTCCTCCCGCGCCACTCATAAATGTGTGATGTCTTAACTGAAATACAGGA
CGCGAACTCTTTCATCAACTCAGTAAACTTCTAGGCACGACCTTGTACAG
GAAGTACTTCGTATTTACTCATTTTGTCATAAAGGCATGACAACGCACAC
ACATGATACGATCACATCATATCGCAGGTAGAGATACAGACAACCGTCCA
TGTATATATGAAGAGATGAAGAGGGAAAATGAACACAAAAGTGGGAAATT
CAGGAGCGGCTGCTGCACAGCTGTGTGCGCGTGTGTTGTCATCTCATATT
CTCTGGCACACTAGTCTGCACCCTGCGGTTCAAACTACAGGCTAGGCCCA
TCGACGGGGTCACACAGGAGGAAGGTCAACACAGGAGGAGTTACCCCCAC
CTTCCTTCTGCGGTACATGCGTGAGGTTTTTTCTCGCGAGCAGGGATCCG
CGGTCCCTACCCTCGTCGGCGAAGCCGAATCTTAGTTATCGGTACCTCTC
TTTGCTCAGTACCTTTCAATGTCCGTGCTGCTGACTCATCCGATAGTGAA
CACGTTCTCTGGTCGCAGGATACAGACCCGGAGAGGGTACAGAGGACCCG
GAGAGGGTACAGAGGATACAGCAGTTGAAAGCCGGGAAATGTAGCTACCC
AGCAGTAAAGGTACACTCACAAGCGCCATATGATGCACTCAGGAAAATTT
TACTAAGAGCTTGAAACGGACCCCGAAACAGCCACCCACTGCCACAGCAG
CAGCACAGCAGACGAAATTAAAAAAATGAAATTTTACAGCGACTATTAAA
TAAAATAAAATAAAATAAAACCATACAATACCAGCCAATGATGAGTGCCC
GGCAATCGCCGAGCTCAGGCACCGAGGGGATGCAACTCCCATCGGTCCAC
CGAACAAAACGAAGAAACAAACAACAAAATGTCGAAGCGCAAAAGAACAG
AAAAGAAAAATGATCATTTTATATGATTCAAGTACCTCGGTATCATACAC
AATACTTCGAAGAAATACACGCAACTCGAAATCGAAATACACGCAACTCG
AAATCGAATTCGCGAGACCTGAACGCACTGCTGTACAGTAATCAGGACGC
GGCCAACAGGGGGCGCAATGAGATGGGACGATCATAATCAGTAGGAGAGT
GGTTGCCATCACAGCAGCCAGTCAAGCCGGCGCATGCCGTGCTACTCGTT
CCATCTCTTCCCTGTTGCTCTCCTCTGCCGCCGTCGTGACATCATGCTGG
GTCTTTCTACGCTCTACGCTCCCCCGAGATCCCCCCTACGGTTACGTACA
AGGACGATGGCCTTTTGACTCCGGAGTACACGAAATTATCCTTGGACTGC
AACTCGAGATTTTTTGTGAGGCGAACCTACACGTACAGCAGTAGTCAGGA
GTTCATTTTAGGTAGGCTTTCGCTGCTCACACGGGGATGAGCATATTGTG
CCCCGCGCGCGGCAGGCAGTCGCTCAGACCACTACGTGTACTCCTGTTGT
GGCCGACAAAACCTCGCAACACCACGGGCACCATCTACGGGCCAAATACA
CAAATAATGTGCATTTCGCTTCCACGCGTGGGTCGACGCCAATGTCAAAA
GAGGGGATGAATCCGCCCTCGACCGACGTTGTGGAAATGTACCCCTCATG
AAGGGGTCCTCTTCCACATATAACCGACTCTTTCTGCGCTCGCTTCTACA
AGCCCCCCTCCCGCCCCCCCCGCTTCTCGCCACGGGGCTTCGCCTTGTTT
GCACCGGATTGTTTCCTGTCTGCCTGCCCCCCGTTCTCATCCTTGTGCGG
GTCGGTCATAAATCTCGCAGCCCCCCTTCACCCCCCCCCCCTGTGTACCA
CGGAAACGTTATCATATCAAATCATATCATATCATATATGTACGGAGTAA
ATGTTAGGCAAAACGGTGGTACACCCCATGCCCACTCTCCCTCTGCTGTT
ACGTAATCAATAAGCAAACACCGATCAACCAAGACCAGCATGTATGCAGG
ACTCGCAGCATATCACAAACGCGACCCGGACCTACAACAGCTTGTTGCCG
TTATTCAGAAGTCGAGGGTTCGATCTTCACGAAATATTAGAAACACCACG
CCTACAGCAGTAGCAGTAAATATGTGTACCTGGTGCATTCTCTTTTGGTT
TCCCCATAGATAAGAAAAAAAAGAGGCGACGGCTGCGCGAAAATATGGTT
TCTATTTTCAGAAAGACCCCCCTCCCCCGTCTGCAGCACGCGGTCGATCG
TCAAATGGCTCCCGTGCAGGGTAAGAAACACACCGAATGAGCACACACTC
ATTTTTTTCTCAGCCTCTCTAATACCTTCTGTTCATTCGCAACAAGGATT
TCTGAGTCCTCTCCCCCCGTTGTCTGTCTGTCTGCCTGCTACCTCTGTAT
GATCACGCCAGTGAACAGCCAACCATCGTTGTGAAGCCCTCCCCAACAAG
CACAATTCAACCAAGATTACTGAGCACAAACATACACCCCGTTTTGTCCA
TCTCTGATAGTGCGCTTTTTTCAAACCATCAACCAGACCACGAGCCAACC
AAGATTCCTAGCCCCCCCCCCCCCACCCTCTGTTCTGTCTGCTGGTGTTG
CTGCTTGGTCAAATCGACAACACGAGCTCCCAACCGGCGTTATCGACCAC
CCCAACCAACACATGCCAACCAAGGTTACTGAGCACACACGCACCCCGTT
TCGTCCACCTATTGCTGATCTCAAACCAACAAGCAATACACAACAGACAA
GCCCAGGTGATTTGAGCCCCCCCTTGCCCGGCCAACTTGTCTCGTCTATT
CTGTCTGTCTGCTGCCATTTACTGCGTATCAAATCAATTAAGTACAGGTC
AACCAAGATTCGTCTCACAGTGCAGCAGGCCGCTTCTCTGGCGTTGCTAT
TGCTGTTCGCCGCCAGCGCCCGTGGAAACAAGAGCGGCGGTGTCGCCGCT
CACGCTGTCACTGGGGACCCGGCCCGCCGGCGGCGAACG
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Coding sequence (CDS) from alignment at P-littoralis_Contig102:230065..234353-

>mRNA_P-littoralis_Contig102.40.1 ID=mRNA_P-littoralis_Contig102.40.1|Name=mRNA_P-littoralis_Contig102.40.1|organism=Pylaiella littoralis U1_48|type=CDS|length=264bp|location=Sequence derived from alignment at P-littoralis_Contig102:230065..234353- (Pylaiella littoralis U1_48)
ATGCAGGGTTGTGTGTGGACGCTACCAGCTTGCTTGCTATCTGAATGGTG
TGTGAGGGAGACAGCTTACGGAAAAAAGAAGAAGACAAGCCTGAAGGGGG
GCAGGGCGGTGGCCTGCTCAAGGTCAACCAAGATTCGTCTCACAGTGCAG
CAGGCCGCTTCTCTGGCGTTGCTATTGCTGTTCGCCGCCAGCGCCCGTGG
AAACAAGAGCGGCGGTGTCGCCGCTCACGCTGTCACTGGGGACCCGGCCC
GCCGGCGGCGAACG
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