mRNA_P-littoralis_Contig102.35.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig102.35.1
Unique NamemRNA_P-littoralis_Contig102.35.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig102.35.1 vs. uniprot
Match: A0A6H5JDI4_9PHAE (MaoC-like domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JDI4_9PHAE)

HSP 1 Score: 291 bits (744), Expect = 6.680e-93
Identity = 145/171 (84.80%), Postives = 155/171 (90.64%), Query Frame = 2 
Query:  362 SNSDPLRAERGRFVVTGSLLDARRAGSDSPVPGQFLCVSHAFNPEAVESFAAHVGDDNPIHVDEEYARHAGPRSYDGCIVHGLMVAGLFSTAFGRAISGALYVSQTLKFERPVLVGERVDVRIEVERARVTSSGREVLVRCSTQAFLTDGTVAVSGQAKVLLPRTCEVRSW 874
            S+ DP +  R +FVVTGSLLDARRAGSDSP+PGQFL +SHAF PEAV +FAAH GDDNPIH+DE YAR  GPR+YDGCIVHGLMVAGLFSTAFGRAISGALYVSQTL+FERPVLVGERVD R+EVERARVTSSGREVLVRCST A L DGTVAVSGQAKVLLPRTCEVRSW
Sbjct:   86 SSGDPKQG-REQFVVTGSLLDARRAGSDSPLPGQFLSISHAFGPEAVAAFAAHAGDDNPIHLDEHYARQTGPRNYDGCIVHGLMVAGLFSTAFGRAISGALYVSQTLRFERPVLVGERVDARVEVERARVTSSGREVLVRCSTVASLADGTVAVSGQAKVLLPRTCEVRSW 255
[Close]
BLAST of mRNA_P-littoralis_Contig102.35.1 vs. uniprot
Match: A0A836C9Q9_9STRA (Dehydratase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9Q9_9STRA)

HSP 1 Score: 149 bits (376), Expect = 9.050e-40
Identity = 74/136 (54.41%), Postives = 99/136 (72.79%), Query Frame = 2 
Query:  449 PVPGQFLCVSHAFNPEAVESFAAHVGDDNPIHVDEEYARHAGPRSYDGCIVHGLMVAGLFSTAFGRAISGALYVSQTLKFERPVLVGERVDVRIEVERARVTSSGREVLVRCSTQAFL-TDGTVAVSGQAKVLLPR 853
            P  GQ++ V H F  EAV++FA + GD+NPIH+ EEYA+  G R + GC+VHGL+V+GLFS  FGR+ +GALYV+Q LKF++PV VG+++  RIEV R+R  S G EVL+ CST     + G  A+ G+AKVLLPR
Sbjct:    2 PQVGQWMEVKHTFPQEAVDAFAKYSGDNNPIHLSEEYAKGGGKRHFKGCVVHGLLVSGLFSMLFGRSFAGALYVTQELKFKKPVHVGDKLTARIEVLRSRAISRGDEVLLSCSTVVTNESQGNTAIEGEAKVLLPR 137
[Close]
BLAST of mRNA_P-littoralis_Contig102.35.1 vs. uniprot
Match: A0A482S1V1_9ARCH (MaoC family dehydratase n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S1V1_9ARCH)

HSP 1 Score: 117 bits (292), Expect = 4.050e-27
Identity = 70/153 (45.75%), Postives = 94/153 (61.44%), Query Frame = 2 
Query:  395 RFVVTGSLLDARRAGSDSPVP-GQFLCVSHAFNPEAVESFAAHVGDDNPIHVDEEYARHAGPRSYDGCIVHGLMVAGLFSTAFGRAISGALYVSQTLKFERPVLVGERVDVRIEVERARVTSSGREVLVRCSTQAFLTDGTVAVSGQAKVLLP 850
            RF VTG+L      G+   +  GQF  V H F    V +FA+  GD+NPIH+D E A+H+    + G IVHG+  + LFST FGRA+ GA+YV Q+L F+RPV +G+ V  RIEV   +    G +VLV CST   L D TV + G+A V++P
Sbjct:   36 RFKVTGTL----DFGNTKAIQVGQFAEVRHVFEQADVNTFASLCGDNNPIHIDPEQAKHS---LFGGTIVHGIFTSSLFSTIFGRALPGAIYVDQSLVFKRPVHIGKVVLARIEVLEVKPRKKG-DVLV-CSTVCKLADETVVIDGKASVMIP 179
[Close]
BLAST of mRNA_P-littoralis_Contig102.35.1 vs. uniprot
Match: A0A4D9D0T8_9STRA (MaoC-like domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D0T8_9STRA)

HSP 1 Score: 105 bits (263), Expect = 6.310e-23
Identity = 62/164 (37.80%), Postives = 95/164 (57.93%), Query Frame = 2 
Query:  362 SNSDPLRAERGRFVVTGSLLDARRAGSDSPVPGQFLCVSHAFNPEAVESFAAHVGDDNPIHVDEEYARHAGPRSYDGCIVHGLMVAGLFSTAFGRAISGALYVSQTLKFERPVLVGERVDVRIEV--ERARVTSSGREVLVRCSTQAFLTDGTVAVSGQAKVLL 847
            + ++P++A+     ++G+LL+A+  G      G  + + H F  + V  FA   GDDNP+H+DE++AR  G   + G IVHG++V  LFST FG    G +Y+ Q+ KF RPV VG+ V   +EV   R R  +S    L+ CST     +G VA+ G+A V++
Sbjct:   29 ATTNPIKAK-----ISGTLLEAKEKGRRIEA-GMQVELPHTFERDDVALFARLSGDDNPLHLDEDFAREQGV--FAGAIVHGVLVGSLFSTIFGVTFPGCVYLQQSFKFSRPVYVGKAVTAVVEVTRRREREEASPPSSLLFCSTHIIDQEGFVAIGGEAVVMV 184
[Close]
BLAST of mRNA_P-littoralis_Contig102.35.1 vs. uniprot
Match: A0A6G0X921_9STRA (MaoC-like domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X921_9STRA)

HSP 1 Score: 104 bits (259), Expect = 9.290e-23
Identity = 63/161 (39.13%), Postives = 89/161 (55.28%), Query Frame = 2 
Query:  383 AERGRFVVTGSLLDARRAGSDSPVPGQFLCVSHAFNPEAVESFAAHVGDDNPIHVDEEYARHAGPRSYDGCIVHGLMVAGLFSTAFGRAISGALYVSQTLKFERPVLVGERVDVRIEVERARVTSSGREVLVRCSTQAFLTDGTVAVSGQAKVLLPRTCEV 865
            A R R  V G L    +     P  G    + H F+ + VE+FAA  GD NP+HVD  +A       +   +VHG++   LF T FG  + GA+YVSQ ++F +P+ V E V  RIEV + R     R  +V CST+ F  +G VA+SG+A+V+LP+   V
Sbjct:    6 ALRRRIQVLGELTKVPQGAL--PAVGVTAEIHHTFSVDDVEAFAALSGDTNPLHVDPAFAAKT---VFGKPVVHGILCTSLFPTMFGATMPGAIYVSQNVRFHKPLYVNEPVRARIEVTKVR---ESRRFVV-CSTKCFNKEGDVAISGEAQVMLPKPAVV 157
[Close]
BLAST of mRNA_P-littoralis_Contig102.35.1 vs. uniprot
Match: A0A485KJA8_9STRA (Aste57867_8083 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KJA8_9STRA)

HSP 1 Score: 103 bits (258), Expect = 1.180e-22
Identity = 59/155 (38.06%), Postives = 86/155 (55.48%), Query Frame = 2 
Query:  389 RGRFVVTGSLLDARRAGSDSPVPGQFLCVSHAFNPEAVESFAAHVGDDNPIHVDEEYARHAGPRSYDGCIVHGLMVAGLFSTAFGRAISGALYVSQTLKFERPVLVGERVDVRIEVERARVTSSGREVLVRCSTQAFLTDGTVAVSGQAKVLLPR 853
            R    V G L     A    P  G    + H F P  VE+FA   GD NP+HVD ++A      ++   +VHG++   LF T FG    G++YVSQ+++F +P+ V E +  +IEV + +     R  LV C+T+   +DG VA+SG+AKVLLP+
Sbjct:    8 RRSICVVGDLTKV--AQGTLPTVGTTADIHHTFTPAHVEAFAELSGDSNPLHVDADFA---ATTTFGKPVVHGILCTSLFPTMFGATFPGSIYVSQSVRFHKPIFVDEPLHAQIEVIQVKE----RMRLVVCATRCLNSDGDVAISGEAKVLLPK 153
[Close]
BLAST of mRNA_P-littoralis_Contig102.35.1 vs. uniprot
Match: A0A1V9Z489_9STRA (MaoC-like domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z489_9STRA)

HSP 1 Score: 102 bits (254), Expect = 4.380e-22
Identity = 58/157 (36.94%), Postives = 86/157 (54.78%), Query Frame = 2 
Query:  383 AERGRFVVTGSLLDARRAGSDSPVPGQFLCVSHAFNPEAVESFAAHVGDDNPIHVDEEYARHAGPRSYDGCIVHGLMVAGLFSTAFGRAISGALYVSQTLKFERPVLVGERVDVRIEVERARVTSSGREVLVRCSTQAFLTDGTVAVSGQAKVLLPR 853
            A R    V GSL +  +     P  G    + H F P  V +FA   GD NP+H+D ++        +   +VHG++ + LF T FG  I G +YVSQ L+F +P+ VG+ + +RIEV   +     R  L+ C+T+ F  DG VA+SG+AKVL+ +
Sbjct:    7 AGRRAIHVVGSLTEVPKGVL--PNVGVGAEIHHTFTPADVAAFATLTGDTNPLHLDADFC---ATTVFKRPVVHGILCSALFPTVFGATIPGCVYVSQNLRFHKPIFVGDPLKIRIEVTEVKE----RVRLLTCATECFNADGEVAISGEAKVLITK 154
[Close]
BLAST of mRNA_P-littoralis_Contig102.35.1 vs. uniprot
Match: A0A1V9YW60_9STRA (MaoClike domain containing protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9YW60_9STRA)

HSP 1 Score: 100 bits (250), Expect = 1.340e-21
Identity = 57/158 (36.08%), Postives = 86/158 (54.43%), Query Frame = 2 
Query:  380 RAERGRFVVTGSLLDARRAGSDSPVPGQFLCVSHAFNPEAVESFAAHVGDDNPIHVDEEYARHAGPRSYDGCIVHGLMVAGLFSTAFGRAISGALYVSQTLKFERPVLVGERVDVRIEVERARVTSSGREVLVRCSTQAFLTDGTVAVSGQAKVLLPR 853
            R +R    V G L    +   + P  G    + H F    VE+FA   GD NP+H+D  +        +   IVHG++   LF T FG  + G++YVSQ+++F++P+ V E + +RIEV + +     R  LV C+T+ F   G VA++GQA VLLP+
Sbjct:    3 RWQRRSIHVLGGLTKVPKG--ELPAVGTCAEIHHTFTSNDVENFAQLTGDTNPLHLDPIFCTKT---QFKKPIVHGILCTSLFPTIFGATLPGSIYVSQSIRFKKPIYVNEPLQIRIEVTQVKE----RMRLVICNTECFNAQGEVAITGQANVLLPK 151
[Close]
BLAST of mRNA_P-littoralis_Contig102.35.1 vs. uniprot
Match: W4GC24_9STRA (MaoC-like domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GC24_9STRA)

HSP 1 Score: 99.4 bits (246), Expect = 7.750e-21
Identity = 55/135 (40.74%), Postives = 78/135 (57.78%), Query Frame = 2 
Query:  449 PVPGQFLCVSHAFNPEAVESFAAHVGDDNPIHVDEEYARHAGPRSYDGCIVHGLMVAGLFSTAFGRAISGALYVSQTLKFERPVLVGERVDVRIEVERARVTSSGREVLVRCSTQAFLTDGTVAVSGQAKVLLPR 853
            P  G    + H F+   VE+FAA  GD NP+HVD   A  A   ++   +VHG++   LF T FG    GA+YV+Q +++ +P+ VG+ V   IEV + +     R  LV C+T+     G VA+SGQAKVLLP+
Sbjct:   26 PEEGVTASIDHVFHAADVETFAALSGDSNPLHVD---AAFAATTTFGKPVVHGILCTSLFPTIFGATFPGAIYVAQDVRYHKPIHVGDLVHAEIEVLQVKA----RMRLVVCATRCLDRHGDVAISGQAKVLLPK 153
[Close]
BLAST of mRNA_P-littoralis_Contig102.35.1 vs. uniprot
Match: A0A067CVK7_SAPPC (MaoC-like domain-containing protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067CVK7_SAPPC)

HSP 1 Score: 98.2 bits (243), Expect = 1.910e-20
Identity = 58/158 (36.71%), Postives = 90/158 (56.96%), Query Frame = 2 
Query:  380 RAERGRFVVTGSLLDARRAGSDSPVPGQFLCVSHAFNPEAVESFAAHVGDDNPIHVDEEYARHAGPRSYDGCIVHGLMVAGLFSTAFGRAISGALYVSQTLKFERPVLVGERVDVRIEVERARVTSSGREVLVRCSTQAFLTDGTVAVSGQAKVLLPR 853
            RA R    V G L +   AG+  P  G    + H F+   VE+FA   GD NP+H+D  +        +   +VHG++V+ LF T FG  + G++YVSQ+L+F +P+ V + + +RIEV + +     R  LV C+TQ    +G +A+SG+AKVL+ +
Sbjct:   12 RAGRRYIHVVGRLTEVP-AGA-LPDIGVGAEIHHTFHAHDVEAFATLTGDTNPLHLDPTFC---ATTPFGKPVVHGILVSSLFPTVFGATMPGSVYVSQSLRFHKPIFVNDPLTIRIEVTQVKA----RMRLVVCATQCVNKEGEIAISGEAKVLIAK 160
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig102.35.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JDI4_9PHAE6.680e-9384.80MaoC-like domain-containing protein n=2 Tax=Ectoca... [more]
A0A836C9Q9_9STRA9.050e-4054.41Dehydratase n=1 Tax=Tribonema minus TaxID=303371 R... [more]
A0A482S1V1_9ARCH4.050e-2745.75MaoC family dehydratase n=1 Tax=archaeon TaxID=190... [more]
A0A4D9D0T8_9STRA6.310e-2337.80MaoC-like domain-containing protein n=1 Tax=Nannoc... [more]
A0A6G0X921_9STRA9.290e-2339.13MaoC-like domain-containing protein n=1 Tax=Aphano... [more]
A0A485KJA8_9STRA1.180e-2238.06Aste57867_8083 protein n=1 Tax=Aphanomyces stellat... [more]
A0A1V9Z489_9STRA4.380e-2236.94MaoC-like domain-containing protein n=1 Tax=Achlya... [more]
A0A1V9YW60_9STRA1.340e-2136.08MaoClike domain containing protein n=1 Tax=Thraust... [more]
W4GC24_9STRA7.750e-2140.74MaoC-like domain-containing protein n=1 Tax=Aphano... [more]
A0A067CVK7_SAPPC1.910e-2036.71MaoC-like domain-containing protein n=1 Tax=Saprol... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig102contigP-littoralis_Contig102:193451..197527 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FQW9
PFAMsMaoC_dehydratas,PfkB
Model size1408
Max annot lvl2759|Eukaryota
KEGG rclassRC00002,RC00831
KEGG koko:K12832,ko:K17865,ko:K18532,ko:K21031
KEGG ReactionR00127,R01547,R02921,R03027
KEGG Pathwayko00040,ko00230,ko00515,ko00630,ko00650,ko01100,ko01110,ko01120,ko01130,ko01200,ko03008,ko03040,map00040,map00230,map00515,map00630,map00650,map01100,map01110,map01120,map01130,map01200,map03008,map03040
KEGG ModuleM00049,M00352,M00373
Hectar predicted targeting categoryother localisation
Exons3
Evalue1.28e-94
EggNOG OGsCOG2030@1|root,KOG1206@2759|Eukaryota
Ec32 ortholog descriptionHotDog domain
Ec32 orthologEc-02_003190.1
EC2.7.4.3,2.7.7.40,4.2.1.55
Descriptionfatty acid beta-oxidation, unsaturated, even number
Cds size828
COG categoryI
BRITEko00000,ko00001,ko00002,ko01000,ko03009,ko03041
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789358.6027267-UTR-P-littoralis_Contig102:193450..1939811680789358.6027267-UTR-P-littoralis_Contig102:193450..193981Pylaiella littoralis U1_48UTRP-littoralis_Contig102 193451..193981 -
1680789358.6480973-UTR-P-littoralis_Contig102:197478..1975271680789358.6480973-UTR-P-littoralis_Contig102:197478..197527Pylaiella littoralis U1_48UTRP-littoralis_Contig102 197479..197527 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789358.6175659-CDS-P-littoralis_Contig102:193981..1941741680789358.6175659-CDS-P-littoralis_Contig102:193981..194174Pylaiella littoralis U1_48CDSP-littoralis_Contig102 193982..194174 -
1680789358.63059-CDS-P-littoralis_Contig102:195134..1952451680789358.63059-CDS-P-littoralis_Contig102:195134..195245Pylaiella littoralis U1_48CDSP-littoralis_Contig102 195135..195245 -
1680789358.639317-CDS-P-littoralis_Contig102:196954..1974781680789358.639317-CDS-P-littoralis_Contig102:196954..197478Pylaiella littoralis U1_48CDSP-littoralis_Contig102 196955..197478 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig102.35.1prot_P-littoralis_Contig102.35.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig102 193982..197478 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig102.35.1

>prot_P-littoralis_Contig102.35.1 ID=prot_P-littoralis_Contig102.35.1|Name=mRNA_P-littoralis_Contig102.35.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=276bp
MHGPEPLKTAGYGYASKRMTTTSAVTRILLLGGRAIRRDSLRCITPALKC
GGLNGRSSSSRCYLNVRAGTNTNPSSSISSSRRRFSDSASAPPYPPPPPP
GVTGSNSDPLRAERGRFVVTGSLLDARRAGSDSPVPGQFLCVSHAFNPEA
VESFAAHVGDDNPIHVDEEYARHAGPRSYDGCIVHGLMVAGLFSTAFGRA
ISGALYVSQTLKFERPVLVGERVDVRIEVERARVTSSGREVLVRCSTQAF
LTDGTVAVSGQAKVLLPRTCEVRSW*
back to top

mRNA from alignment at P-littoralis_Contig102:193451..197527-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig102.35.1 ID=mRNA_P-littoralis_Contig102.35.1|Name=mRNA_P-littoralis_Contig102.35.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=4077bp|location=Sequence derived from alignment at P-littoralis_Contig102:193451..197527- (Pylaiella littoralis U1_48)
CAAACGCAAGTTCAAGTTTTACGGCAGTGTTCTGGGTCTTCATCCGTACA
TGCACGGCCCCGAACCACTCAAAACTGCTGGGTACGGATACGCGTCGAAG
AGAATGACGACTACCTCCGCCGTGACACGGATACTACTGCTGGGGGGGCG
GGCGATCCGACGCGATTCACTCAGGTGTATCACGCCTGCTCTCAAGTGCG
GAGGATTAAATGGACGCTCGTCTTCGAGCCGTTGTTACCTGAACGTGCGT
GCCGGCACCAACACCAACCCCAGCAGCAGTATCAGCAGTAGCCGCCGTCG
GTTTTCCGACAGTGCTAGTGCTCCTCCTTATCCTCCTCCTCCTCCTCCCG
GGGTAACTGGCAGTAACAGCGACCCGCTGCGAGCAGAACGAGGACGGTTC
GTGGTGACAGGTTCGCTCCTTGACGCGAGGAGAGCAGGGTCGGACTCGCC
CGTGCCCGGGCAGTTTCTGTGCGTGTCTCACGCGTTCAACCCCGAGGCAG
TGGAGTCGTTCGCGGCTCACGTCGGGGACGATAACCCCATACACGTCGAC
GAGGAGTATGCAAGACACGCGGGGTGAGGTGTGGTACCTGGAGTGTGCGC
GCACATACGTAGAAGGACGCCAACTCCGCTTAGTTGCAAACAGAAATTTT
ACGTTGACTTCATGGATTGCTGCTGTAATTGTATTCATGCGGCGAGATTG
GGATCCGGTCCGTGACCCGTGAGACTTGACTGCATCCAAATCTGGCGCCT
GCATGAACCCTACGAACTACACCGGTATATACAAAGGCTGATTGTCATAT
CATACTACTGCTGTTGTCCTGCTGCAGTGCTGTTGTTCCAGGACGCGGAG
TATTGCCGTAAGATGACACTGAAGGATTTGAGTATCATATAAAACGAAAT
ACACCATAATACTCCGGAGTACTTTCTTTACACGTGGTTTGTGAAAGTGG
AAACTACGCGTCATCTCATGCAACAACCCCCCGTTCCACATTGCGCAACG
ACCAAAGCGTGGGGAGCTAGGAAGACTATGCACTCCTCCCGCATATCATG
TGTAGCGTATGTTTGAACGGGCTATCGTATGATATGATTTGTGTCTGATA
TGATGCGTGTTTCATCCTTCGCAGTGTGAGTTGATGTGACTTGTACGAAG
AACTTGGTATGCAATATGGCAGAGTTCTGAACCTGCTGAATAATGCTCTG
TACAGTACAGGAGTTCGAGCAGTAGTAGTGTTGCTGGTTGGTCCGCTCTG
TTACCGTGCAAAACCGTATGACGTATTCACCATACACATGCCGGGCGAGA
TGGCAGCTTGTTGTTGGAATGGTTGGGATCGTGATGCAGGCAGGCCCTGC
TTTTTTCTTGTTCGGATTTCGATACGCATCTCGACAGTAGCTCATTCACA
CAGCGGTGACCGACCTTCTCGTAGAAACCCCAACCACAACATTGTCTGAA
AGCCTCAGTTCTTTGCGCGCGCCTAAGGTTTGTCATACGTTCGGCTACTT
TATACTTCGAAGTACACCAGTAGAACTGTGTTGCACTTCGAGATGTTCAA
TCGGCGAGGTCATTCATTGAACCCATTTTTTTTTTTGTGGCCTGTTCATT
GTATCTTATATACGAAGCAGTACATACTTTATCGCTGGGGCGGAAAAAAA
CACCGTCCTTCATGGTTGCATGGTTGTGGCAACATCAGCCTCAGTCTCTT
TCAGAGTATTTTCTTGAGAGAAGGCCGGTACCGCTGCCGTGCTTTGCGTA
TTTCGGTTGAATGAGATAAACGCTACACAACAGGTGTGCCAACGATTTGT
GTGACATCGACGAAGTGTTTCACGGCAGTCTGCTAGATTGCAACCGCTTG
GCCAGTATTACAACGGGAGCAAAACCCGCCAGCTGAGCCCTCCTCGTGAC
GCTTATTACAGAAGACGCGTACGAAGATAGGCCATGGTTGGGAAAGAGAA
CCAACCTCTTATGCGACCCCATCCGAAGCTCCAATCGTCAGAGCAGGGGG
GGCGCGGGGGGGGGGTCGGTAGGAGGGTCTCTGTTGAGATTGGCAATTGC
ATATCAGTTATGACGATCTACATATAGAAAACGAACCACACGCCTGGCCA
AGGTACCCTTTGGCGTTCCGTTTGTAGATCCGCGCGAATTGTTGGAAGAT
ACTGTTGTTTCATACATCTCGTAAACTGCCGCAGTTCACGCGTGCCTTGC
CCAATTTTTTGTCCACTCGTCGATGTTTCCGTAAACGCTCCCCCCTTCCG
TTCTCCATGTGGCCGTGTTTCACTCACTACAGACCTCGGAGCTACGACGG
CTGTATCGTTCACGGGCTGATGGTGGCTGGGCTGTTTTCGACTGCGTTTG
GCCGGGCTATTTCCGGCGCTCTCTACGTCTCCCAAACGCTCAAGTACGAA
GAAAAAAGTACTTTAGTCAGAGATACTTGTTGAACAATGTTTTTGGGGCC
CAACGTCGGGGGCAGCTTACGTCTTCCCGCCCGCACTGTGAAATCAAGTG
AAATGTACTGCCTGGTGGCTTCTTTTGGCGGCAATTACGTGGATTTACGG
TTGATGAGTCTTGACAAACTTCGCTGCTGTGATAGGATTGGGAAATAATT
GGGTCTGCTATTTTTTTTTTGGGTAGACTTCCCGTCAAAAAAGATACCTG
GTACTCATTTCATGGCGCTCACTTGTTTCGGTACAAGTGTGGTTGTGATG
GGCAGTTGTTTCTGTCAGGCAGGGTGTTAAGAGGTCTCGATGCAGCAGCG
TGCATGCTGAATTGAACTATTGTTTGTTTTGAGATTTTGAATGTCTTCAA
TGGCTGTGGGGACAGCCAATGCGACTGCTCTTGGTTGTCTCTCTTGCGTG
TGTATTCATCCGTGCTCGTTTCTGTTTTGTTTTTTCTGTGACTTTGACCT
TCACTTGTTTCTTGTTCGGTCGTGTTTCTGGTCCACAAATACCACGCCGC
TTTTTCGATGGACGCGCCCACTCATCAACACACCGCGACAAAACCAAAAT
CAGAGCTCGCTTCAGTACTGCACCCCCTTCGGTTTCCTTGCTGTCAAAGG
GCTCGTTTCCTTATCCTTATCCTTCTCATGTACATGGGTTGCGGCGACAG
CACTGTAATCGGAAAAACAGGTCAGTCGTACTTTGTTTCGCGAGTCATTG
AGCCGGGGGAGTTTTGCCCAACACCGCGCCACGCCCGGTGCCCCATACAC
ACCATGTCCACCTGACATCGACACACGATGAACACCAACTGCTACAGCGA
GCGGTACGGACCTCATATCACGCTTACCACAGCTGACATCGACACACGAT
GAACGTGCACCAACTCTGCGGTGCTGTTCGGGACGATACAAAAATGTCCC
CAGGTTTGAGCGGCCCGTGTTAGTCGGGGAGAGAGTGGACGTCCGAATCG
AAGTGGAGCGGGCGCGAGTCACGTCATCGGGCAGGGAAGTTTTGGTGCGG
TGTTCCACGCAGGCGTTTCTCACGGACGGGACTGTTGCCGTATCCGGCCA
GGCCAAGGTGCTATTGCCCCGCACGTGCGAGGTCCGATCTTGGTGAAACA
ATGAATAGTAAGATAGTTGCCGAGAAAGTTGGCGCTGCACAGATTTGTTT
TTGAGGATTTGGGTTTAGACATCACAAAATGATAGGGACGCCCCCCCCAC
TCAGGGGGATACGGTATGTCTTGAATCCCTTTTGGAGAGGGTGGGCTGTG
TGCGACCCCACCGGAGAATAACAGTTTTCGATACTGCTGTTCAGGTTTCA
CAAAAGCGAGACGGAGTGGTTTTGTGTGTATGATCGAAGTTGGGAGAGCT
GCCAAACGTCTCTGGGACTCGTTGCACGCCCTCCTTGCCATGAACTGCTG
CGGTAGAACCTGCGTGTATGATGTGTTTCCTGCCTTCTACTGATACCTTG
ATTGGGTATGATCTGACCCAGTCCGAGATATTTGCAAAGGTCCAGAGGAA
TGACTGACAGCAAGGTGTCGGTTTGGTCCGGACATGTCTTTGATTAAAGC
GAGCGGGAGGATACGACATTCAGAGAGGGTATGATAGAGGTGATAAGATG
CTTTGTCGGGGGCGAAGGGAATGCAGA
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig102:193451..197527-

>mRNA_P-littoralis_Contig102.35.1 ID=mRNA_P-littoralis_Contig102.35.1|Name=mRNA_P-littoralis_Contig102.35.1|organism=Pylaiella littoralis U1_48|type=CDS|length=828bp|location=Sequence derived from alignment at P-littoralis_Contig102:193451..197527- (Pylaiella littoralis U1_48)
ATGCACGGCCCCGAACCACTCAAAACTGCTGGGTACGGATACGCGTCGAA
GAGAATGACGACTACCTCCGCCGTGACACGGATACTACTGCTGGGGGGGC
GGGCGATCCGACGCGATTCACTCAGGTGTATCACGCCTGCTCTCAAGTGC
GGAGGATTAAATGGACGCTCGTCTTCGAGCCGTTGTTACCTGAACGTGCG
TGCCGGCACCAACACCAACCCCAGCAGCAGTATCAGCAGTAGCCGCCGTC
GGTTTTCCGACAGTGCTAGTGCTCCTCCTTATCCTCCTCCTCCTCCTCCC
GGGGTAACTGGCAGTAACAGCGACCCGCTGCGAGCAGAACGAGGACGGTT
CGTGGTGACAGGTTCGCTCCTTGACGCGAGGAGAGCAGGGTCGGACTCGC
CCGTGCCCGGGCAGTTTCTGTGCGTGTCTCACGCGTTCAACCCCGAGGCA
GTGGAGTCGTTCGCGGCTCACGTCGGGGACGATAACCCCATACACGTCGA
CGAGGAGTATGCAAGACACGCGGGACCTCGGAGCTACGACGGCTGTATCG
TTCACGGGCTGATGGTGGCTGGGCTGTTTTCGACTGCGTTTGGCCGGGCT
ATTTCCGGCGCTCTCTACGTCTCCCAAACGCTCAAGTTTGAGCGGCCCGT
GTTAGTCGGGGAGAGAGTGGACGTCCGAATCGAAGTGGAGCGGGCGCGAG
TCACGTCATCGGGCAGGGAAGTTTTGGTGCGGTGTTCCACGCAGGCGTTT
CTCACGGACGGGACTGTTGCCGTATCCGGCCAGGCCAAGGTGCTATTGCC
CCGCACGTGCGAGGTCCGATCTTGGTGA
back to top