mRNA_P-littoralis_Contig102.116.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig102.116.1
Unique NamemRNA_P-littoralis_Contig102.116.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig102.116.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig102contigP-littoralis_Contig102:571599..571957 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size359
Hectar predicted targeting categoryother localisation
Exons1
Cds size336
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789357.80134-UTR-P-littoralis_Contig102:571598..5716211680789357.80134-UTR-P-littoralis_Contig102:571598..571621Pylaiella littoralis U1_48UTRP-littoralis_Contig102 571599..571621 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789357.811772-CDS-P-littoralis_Contig102:571621..5719571680789357.811772-CDS-P-littoralis_Contig102:571621..571957Pylaiella littoralis U1_48CDSP-littoralis_Contig102 571622..571957 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig102.116.1prot_P-littoralis_Contig102.116.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig102 571622..571957 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig102.116.1

>prot_P-littoralis_Contig102.116.1 ID=prot_P-littoralis_Contig102.116.1|Name=mRNA_P-littoralis_Contig102.116.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=112bp
MLDARPALELLERHMSMPSTDFLFDERLLAAILPDVDRFCARDPDFLPFA
LNAVDALALQQEEWYALFPYVEVELETEPLFDGMTSFAALAPSKKPYFVG
KRPTSEDINVFH
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mRNA from alignment at P-littoralis_Contig102:571599..571957+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig102.116.1 ID=mRNA_P-littoralis_Contig102.116.1|Name=mRNA_P-littoralis_Contig102.116.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=359bp|location=Sequence derived from alignment at P-littoralis_Contig102:571599..571957+ (Pylaiella littoralis U1_48)
CCTCGGTAGACACTTTGCTGCAGATGCTTGATGCCCGCCCCGCTTTAGAA
TTGCTTGAGCGACACATGAGCATGCCCTCCACTGATTTTTTGTTCGACGA
AAGACTGCTGGCCGCTATTCTGCCTGACGTGGATCGTTTTTGTGCGCGCG
ACCCTGATTTTCTGCCGTTTGCTCTAAACGCCGTCGATGCCCTTGCTCTC
CAGCAAGAAGAGTGGTATGCACTCTTTCCGTATGTAGAGGTTGAGCTTGA
AACTGAGCCGCTTTTTGATGGGATGACTAGCTTTGCTGCGCTTGCTCCGA
GTAAGAAGCCTTATTTTGTAGGCAAACGGCCAACCTCGGAAGATATAAAC
GTCTTTCAT
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Coding sequence (CDS) from alignment at P-littoralis_Contig102:571599..571957+

>mRNA_P-littoralis_Contig102.116.1 ID=mRNA_P-littoralis_Contig102.116.1|Name=mRNA_P-littoralis_Contig102.116.1|organism=Pylaiella littoralis U1_48|type=CDS|length=336bp|location=Sequence derived from alignment at P-littoralis_Contig102:571599..571957+ (Pylaiella littoralis U1_48)
ATGCTTGATGCCCGCCCCGCTTTAGAATTGCTTGAGCGACACATGAGCAT
GCCCTCCACTGATTTTTTGTTCGACGAAAGACTGCTGGCCGCTATTCTGC
CTGACGTGGATCGTTTTTGTGCGCGCGACCCTGATTTTCTGCCGTTTGCT
CTAAACGCCGTCGATGCCCTTGCTCTCCAGCAAGAAGAGTGGTATGCACT
CTTTCCGTATGTAGAGGTTGAGCTTGAAACTGAGCCGCTTTTTGATGGGA
TGACTAGCTTTGCTGCGCTTGCTCCGAGTAAGAAGCCTTATTTTGTAGGC
AAACGGCCAACCTCGGAAGATATAAACGTCTTTCAT
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