mRNA_P-littoralis_Contig102.113.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig102.113.1
Unique NamemRNA_P-littoralis_Contig102.113.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig102.113.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig102contigP-littoralis_Contig102:540661..545116 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size520
Hectar predicted targeting categoryother localisation
Exons4
Cds size282
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig102.113.1prot_P-littoralis_Contig102.113.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig102 540876..545093 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789357.5528376-UTR-P-littoralis_Contig102:540660..5408751680789357.5528376-UTR-P-littoralis_Contig102:540660..540875Pylaiella littoralis U1_48UTRP-littoralis_Contig102 540661..540875 -
1680789357.6053956-UTR-P-littoralis_Contig102:545093..5451161680789357.6053956-UTR-P-littoralis_Contig102:545093..545116Pylaiella littoralis U1_48UTRP-littoralis_Contig102 545094..545116 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789357.5645576-CDS-P-littoralis_Contig102:540875..5408991680789357.5645576-CDS-P-littoralis_Contig102:540875..540899Pylaiella littoralis U1_48CDSP-littoralis_Contig102 540876..540899 -
1680789357.5756772-CDS-P-littoralis_Contig102:541859..5419371680789357.5756772-CDS-P-littoralis_Contig102:541859..541937Pylaiella littoralis U1_48CDSP-littoralis_Contig102 541860..541937 -
1680789357.5849426-CDS-P-littoralis_Contig102:543643..5437621680789357.5849426-CDS-P-littoralis_Contig102:543643..543762Pylaiella littoralis U1_48CDSP-littoralis_Contig102 543644..543762 -
1680789357.5969715-CDS-P-littoralis_Contig102:545032..5450931680789357.5969715-CDS-P-littoralis_Contig102:545032..545093Pylaiella littoralis U1_48CDSP-littoralis_Contig102 545033..545093 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig102.113.1

>prot_P-littoralis_Contig102.113.1 ID=prot_P-littoralis_Contig102.113.1|Name=mRNA_P-littoralis_Contig102.113.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=94bp
MPRAIGNAQVLRSRGSRGQRGGVLGLGSAGFRRKSRPIFRETVVSHSCRQ
AASSSLAIRPTMPFPVGNRPPPGETLSPARSGGALRATCPRCS*
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mRNA from alignment at P-littoralis_Contig102:540661..545116-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig102.113.1 ID=mRNA_P-littoralis_Contig102.113.1|Name=mRNA_P-littoralis_Contig102.113.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=4456bp|location=Sequence derived from alignment at P-littoralis_Contig102:540661..545116- (Pylaiella littoralis U1_48)
AGACGGCATTATATTATTGAGATATGCCTAGAGCTATCGGCAATGCACAA
GTATTGAGGAGCAGGGGCTCTCGAGGGCAACGAGGTATGAGAGAAGGCTT
GCGGAGCTCCACATATACTGCTGTAATCCCTACAGTTGACTGCGGGAATC
GTCGCTTGACAGAGGCTTTTACTGCAGGGTGGGCTGTGGGTTTGAATATA
AAACGGTTACAAGTAGAGGAGTTCTCCGCGTGTTGAGAGAGAAACGCGGG
CTAAATGCTGGTAGGGTTCATGTTCGGTTGGGGGTTGGGGGAGACAACCT
TTGAGCAAAATGTCCTGCTACTGCTGTACCACAGTTCCTCTTGCGTACGA
TGGCAGCGAAGCCAGGCTGTCACTGCCTGCCCTACAAGGTATGCGCCGGT
AAAGTCACACCGCAGAACTCAAACTGGATCCGTAGCATATGATAAGTGCT
GCACTTGCTCCCAGGCAGCGGGGTATTTGACTTGGTGGCGAAAGCAGCAC
AGCCGTATATATTGCTGCTGATATCTGTACTGCTGCTGCTCTTGCTGTAG
TAAACAGTATTGCCCCACGCTCCGCTCTGTTTTCCACAATGCCGGCAGCA
AGTTTAACCCAACCAGTGTCCGTTTTTACGTCCCAGTCTCTCTGAAAACG
TGACCGAAGTGTGTTGATACATACATATATCTTCATCTCACGGGACGTGC
CTTCGCGTTCTTCACACTTGAACGTTTTTAGCCGTGGGCTATCATGAAAA
AAACAGAAAAGCACCGCAGAAAGTTGCATATTGGAAAATATCCTATCGAA
TATAAAAAGTTTGCACAGCAGTATCATCGTGTACTATCCCACTGTTATCA
TATTCAGGATTTTGTTCGGACACTCAGAACTCGAACCCACCTCTCGCTGC
ATGGGGAAAGGTATCCAAGAAAATCATTATTATCGGAGGGTTGCCGGAAG
GGAGTTTGTGGCGCGTTTTTAATGGATTTTGCGTTCTGAAATCAAAAAGG
GTACACGCCGGTTCACAGTTACTTGAATATAATACAGAGTACGATGACAG
CAGTGGGTGTGCGCATAACCTGGAAGTGATTCGAACAACAGGCCCCTCAA
TGAAGTATGAGGGTCGCAATGACAGGAATTGGGTCCACAGAGATAGTAAG
TGTGATGCAAAAACAAAGCCTTTTTAAGCTCTACGGCAGGACACGCCGCG
CATCCCTCACTGGCCGCCACGGCAACATTTTTATCATCAGTGATACAAGA
GCAATATCGACCCGACGGCAACGGGCTACCCCGGCTGTAGCTGTTTCTCA
GAGCCGGTTTCGCCTTGCCGCCATTCTGCCTATCCAAAACAATCTCGGGA
GCAGGTGGTGTTCTGGGACTCGGAAGCGCCGGGTTTCGAAGGAAGTCGCG
TCCGATTTTCAGAGAAACGGTTGTATCCCACTCGTGCCGGCAAGCCGCTT
CCAGCAGCTTGGCGATCAGACCGGTGCGAACTTGAACTGTGAACAAGTGC
TCACCCTCCAATACGGTATTGGCCATGTCAGGTGCATCATATTTTGATCC
TCATCAACCGCACTGTGTGTCCTTACAGGTATACGATGCTGGGCGCCTGT
GTGTGCGTGTGTTGTTTTTGTCTCCCGTCGATTGCGGACGCCAGTCTACA
CCGTTGGCTTTTCAGGGGCGCATCAGCCGGGGTCACACAATTTGTTTTGT
GCTATATACATACCAATCGCTCTTGGCAGATTGGCCACCATGTATTAAGT
GAGAGACCCACGGTTGCAAGTACGAAGCATCATGTTCACAGGTTGTTGTT
CATTTTCTATGCCGATGCCGTGCGTGTCTGTATTGCAGGTAGGTTGCAGG
TAGACGCCACGCTCCTTTTTACCGAGATGTCGGATGCCCGCATCCCTTGC
GTGCATCTTGTCAAGGTCGAAAATTCCACCAAAATACACCCAGGGGCGTT
TCATGGCTAGACATTGGGGCGTTTTCGCCGTTGATGGGGTCTCCAGGATG
CGGGCATCCCACACCTCGGCAAAGGCGGGTGGCGTCTGTTCGCCTGTCTG
TGTGCGTGTTGGTGGTTAAGTCTTTGTAGTTCATGGGAAGGTAAATATCG
TCTTTACATAAAACTTCTTCGAATACCGTGAAATTTCCTTGCAATGGAAA
GAGCCGTTTTTTTTCCCTTGGAAACCCTACTGTGGGACGTTTTCGCTTCT
TTTTTTTCGTGGCAAGAGCAGTTAACGGTGGAGGAGAGGCGAGTGTTTTT
CTCCTTCTTCAGCAGAATAACGAACGCACAATCTTTTTAATCTTGGTTGG
TTTTGTTACGACCCACCCACCTACTGCAAGGACGACATTGCAGACAATTG
TTCGCTTTTGGTTCCGCTGGAGGGGCAGACTTGTAGTCACTACCAGTAGG
CTACGTAGTGATGGTGCGCACACCTTCCTACTACCGAATCTTCGCACAAA
GGGGTTCCTTGGAGCCGGTTTTCTCCCATGCTTGGAAGTTTCAATCTCAA
ATATTTGTCACGGAGATAAGGTGTACACATGAGTTGAAGCTCTAAGCAAT
ACGCTCAGCGGGCCAATCCGGCGAAATCGACCGGCATGTGCTGTGTGACG
GTCTTGCTACGCGTCCAGGGGCGCAATACCGTAGACGTCTACGACACGCT
GTGCTTTGATTTCATTTTACACAGTACGGTTTTATTGCACCCGGAGATCT
TTGCATTCTGCCATCCATTGGGCGTACCTTATCCGCTCATATGGTGTTTT
TCGCGCCATGCAGTGTACCCACCCCGATTGCAGGCCGCACAGGAAGGGTG
CGGTGTTGTATTTCTATTGGTTATTTGGATTTGTACACAATTTTTCTTGG
TGCGTGGTGACATTGATCATGATGCTGCTGCTGCTGCTGCTGCTGCTGCT
GTTGCCGATACTTTGTGCTGGTTCGAGTAGATGTCATCCTCTTGCCAAGT
GAGACCAAGTGCCGCTCCCTGCTACAATACAACCACTTCGTTCGTGATAG
AGCGCTTTTGTCGCAGTTACCGCGAGCCGAGGCACTGAGCGGAAGCACGC
ACGCATTCTTTGGCCGAAGTTACGCCGCACTAAACGCTTCCCAATCGTCG
TTGGGCCCTTATGACTCGTCTTCGCTGTTTCTTTCGTGCTGATCTCCCGA
ACTATCGGGCAATACTTGGGCACATTCAGACGATGCCGTTTCCCGTTGGA
AATAGGCCTCCGCCTGGAGAGACCCTGTCGCCTGCAAGAAGTGGTGGTGC
TCTCCGAGCCGGAGTTAGCACCGTTGGCGGTGGAATGCTTCGTAGCAGGG
CCGACTCGCTCGGGAACAGCAGGAGGAAAGAAATTTGGTATGGACTCGGC
ACTTTTTCCTGAAGACAACTATCGGCACAATGGATCAAAAAAGGTAACTA
CCGTAGGTCGCACAAGATACCACGACCCCCCTGGGATACCACGGACTCCC
CGGAACGATATTCTCATGCTCGAGTACAATGCTCTACAGCAGAAAGAGTG
TCGGTGCCTTTAGAGAGTGATCGTCGTTTGAATCAAACATCTCGCCGATA
AGGTACATCATACCAGTTGCCATGGATATTTCGATTTTGACACCCTTCTC
TTCTGCTTTGTGGCATGCCTCAAACCGATCCTTGAATGTCGACCCACACA
GGGGGGGCGTGGCGCGTTGTGCGACCTTCGAAAAATTTCAACGTGCGCTT
GATTTTTCTGCATGGCCCGGTTTTTGACGAGATCAAAAGCTCAAGGACTC
CTCTACAACAGTAGTCAGTCGTCTCGCGTTTTAACAAGTGCAGGCTTTTT
GCTAGCGCGACACTTTCCTTAATTACGCTTGAAGAATGAAAAACACACAA
ACAAATTCACCCTTTCAGAAATAACTATGGACATATCTGCGGCCTTGAAA
AGTTTCATCGAAATAAGCCTTCTGGATGAGATCCTTCGAAGTACTTACAG
TAGTTTTCGTGTCAAACGAGACACAAAAGAATCGTGTGACCTTGACATTT
CAAGGAACACACAGGGTTCTCCTACTCATACGCCGAACAACGTTACGAAA
ATGACGATATGTACCGGAAAAAAAAATCCCAGAATCCGCGACACAATTCA
CACCGAGAAAGGTAGGTAAACGTACCGGCAGCATTGAAATAACCAAATCC
CGGAACGTTTTCCACTCCACGGTATCATGCCCTCCCGGGCAGGCTTCGAT
AGATGCGGGACGCGCAGGCTACCTGTCCTCGGTGTTCGTGAGGACCGGTC
GTGCCCGATTCTCCCACGAAAACGCCGACTCGTTCCCGGAAAACTACGAA
GAAGAAACCCCGCGTGGGAGATCGAAATCTTCAGGGCCACAGCCAGAGCC
ACAGCCAGAGCCACAGCCAGAGCCACAACCAGAGCCATCGTCCCGAAAAA
CCTCTCGCGTTGCGGGTGCTAAGGTTTCGACGATTTTGTCGTCGTCGTCG
TCGCCG
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Coding sequence (CDS) from alignment at P-littoralis_Contig102:540661..545116-

>mRNA_P-littoralis_Contig102.113.1 ID=mRNA_P-littoralis_Contig102.113.1|Name=mRNA_P-littoralis_Contig102.113.1|organism=Pylaiella littoralis U1_48|type=CDS|length=282bp|location=Sequence derived from alignment at P-littoralis_Contig102:540661..545116- (Pylaiella littoralis U1_48)
ATGCCTAGAGCTATCGGCAATGCACAAGTATTGAGGAGCAGGGGCTCTCG
AGGGCAACGAGGTGGTGTTCTGGGACTCGGAAGCGCCGGGTTTCGAAGGA
AGTCGCGTCCGATTTTCAGAGAAACGGTTGTATCCCACTCGTGCCGGCAA
GCCGCTTCCAGCAGCTTGGCGATCAGACCGACGATGCCGTTTCCCGTTGG
AAATAGGCCTCCGCCTGGAGAGACCCTGTCGCCTGCAAGAAGTGGTGGTG
CTCTCCGAGCTACCTGTCCTCGGTGTTCGTGA
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