mRNA_P-littoralis_Contig102.105.4 (mRNA) Pylaiella littoralis U1_48
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig102.105.4 vs. uniprot
Match: A0A6H5JW62_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW62_9PHAE) HSP 1 Score: 564 bits (1453), Expect = 2.950e-178 Identity = 459/1147 (40.02%), Postives = 521/1147 (45.42%), Query Frame = 1 Query: 121 MERNAFASLFSQPHPQQGNXXXXXXXXXXXXXXTHVSKPSRRAPPSTSSPHV--AGKRPAAASTTSR----GSRFVECPLCGKLVHSSLAQGHVERCTGG------AARERVPPSXXXXXXXXXXXGCSGTDNPGFPATXXXXXXXAHVTLSSRQEVASAPAATHDVALPPGENAAEHRQARCAFSSGVIGGRKPGVGSAAXXXXXXXXXXXXXXXXXXXXXXXXXXXVNSGSLSPRSSRXXXXXXXXXXXXXXXXXXXGRTRTDKNNCVVKNTKASRTAEVSTNTNNAFATLMTASALTNFREEMYLWAHEDGTFSWGWXAAXXXXXXXXXXXXXXXXXXXXXXXXXAPRDHRRWSCQVATKGPDSRKAGMCDLWTNLPPAGSSPVPTPXXXXXXXXXXXXDXXXXGGRAVVTGIGPASGDDNAGLKAVRPNQSLSRLPVAVVKSMLQKNIRRGKAEAAVRCALELALKSWSDAIRRVLVIIVEDSLLHPSAPVLTWLMVATSKGYRPPLRLLEAFLCVVHETAACSVRDSTDS-CRHRRRHFR----NNAPQRPCASLLVDSTXXXXXXXXXXXXXXXAKNFVSDEFPVPHPKTLLFPAA----------------GRDDDGDARACVGSSAAAAADAAVANIRRALLMRVSYGGMAFDQALLKGACLAWGERCGHSNHCALCG--------------------------DPLCLPS-----------------------------PPRPPSVP--------------GPSAPEAAASIV-PFGYAHKSVLSALEGNGWTAFLAAAHQGAGMPPALRLQLLAHVAGTGNGVGEERAGEAEGAVRPRGSERERKMGGSGMATT---TGRSMLLQPNRLGPIIREADAILSGVDFHCSGVIDELLKSTSVAARVGEAIHRCCGIRRNKKRKTQPSQVGAVVVPGLTPATAAASGAAASGGLNGESKGEGRRGVPVRSNSGGGGAVVRNTCPPTGTDGNAHGGSDEESVGVRHAAKQAMWTCSGGLNVRRLRVAFSSGEGDAGVCRDDEXXXXXXXXXXXXXXXXXXXXXXXXWSSPGFLKETVA-VGPGE-GDYLSQGSRDGGXXXXXXXXXXXEPPSDMDSMVWTAMSSDVLGWTRKFVRARLARG 3237
ME +AFASLFSQP + ++A ST S HV + KRP ++ + S GSRFV+CPLCGK VHSSLAQ HVERC G +A ++VPP+ PG + A +++ A ++P E AA A+C S G G K G +G+ P +S R R +C S T + ++AFATLM ASALTNFREEMYL AH+DGT SWGW A RW CQVATKGPD RKAG CD+WTNL PA S P GG V G+ PA GDDNAGLKA RP QSLSRLPVAVVKSMLQKNIRRG+AEAAVRCALELALKSWSDAIRRVLVI VEDSLLHP+AP+LTWLMVATSKGYRPP RLLEAFLCVVHETAAC VRDSTDS CR +N R A + S K F +DEFPVPHPK+LL PA+ AVANIRRALLMRVSYGGMAFDQALLKG CLAWGERCGH +C G +P CL PP PP V G + E I+ PFGYAH+SV SALEGNGWTAFL AAH G GMPPALR LLAHV G G+G RAGE G +R + T S P LGPIIREADAILSGVDFHCSGV+DELL+ST+VAARVG+AI G R N + S++ + VGVR AAKQAMW CS G+N RRLRVAF G+ G + E SSPG+L+ET VG GE G L G G S MD+ VW AMSSDV GWT KFV+ RL+RG
Sbjct: 1 MECDAFASLFSQPR---------------------AASKKKQAFSSTRSKHVQSSAKRPRSSPSPSAASPSGSRFVKCPLCGKSVHSSLAQTHVERCPGSGEEPISSAAKKVPPAAASAP----------AHTPGVSSPQQEAGGKADACVATSLVRRERSLAERVSSIPVVEAAAGPDDAKCG-SIGDSGREKAGA---------------------------------AGTPPPSNSNGDDFTGDGRR---------SRGRRKTTSCSSGEAGDSATDQE----DDAFATLMAASALTNFREEMYLLAHQDGTLSWGWGPAGNPLPPIPAHFDTASS---------------RWRCQVATKGPDGRKAGTCDIWTNLAPAESVTDPV------------LPAAGRGGDRVTRGVTPAGGDDNAGLKAARPAQSLSRLPVAVVKSMLQKNIRRGRAEAAVRCALELALKSWSDAIRRVLVITVEDSLLHPAAPLLTWLMVATSKGYRPPPRLLEAFLCVVHETAACPVRDSTDSSCRXXXXXXXXTCVSNGHHRE-AGFSISSAARTDQDPERQQLPVEKKCFDADEFPVPHPKSLLVPASQGAHVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAIAVANIRRALLMRVSYGGMAFDQALLKGVCLAWGERCGHCYYCCCRGAVHPSFTLTVAAAATAASVDGSTGGSNPSCLEGEKASTSGEGTIFAKGSGSTDNKPVTPQRQPPSPPHVDHKTFSFARPRDQDAGKANREDLVDILQPFGYAHESVRSALEGNGWTAFLVAAHAGTGMPPALRTHLLAHVVGVGSG----RAGERTGNMRQKSXXXXXXXXXXXXXXXXRLTAASTSTHPICLGPIIREADAILSGVDFHCSGVLDELLRSTAVAARVGKAISESRGPRSNGVGDAESSEL--------------------------------------------------------------------DLVGVRQAAKQAMWACSSGINTRRLRVAFLWEAGEEG--EETEVAEGNCGCCL---------------SSPGYLEETEGIVGVGEDGVSLPVGIAGGSS-------------SGMDARVWAAMSSDVSGWTTKFVQGRLSRG 939
BLAST of mRNA_P-littoralis_Contig102.105.4 vs. uniprot
Match: D7G4U0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4U0_ECTSI) HSP 1 Score: 361 bits (927), Expect = 1.810e-108 Identity = 275/655 (41.98%), Postives = 311/655 (47.48%), Query Frame = 1 Query: 1318 VVTGIGPASGDDNAGLKAVRPNQSLSRLPVAVVKSMLQKNIRRGKAEAAVRCALELALKSWSDAIRRVLVIIVEDSLLHPSAPVLTWLMVATSKGYRPPLRLLEAFLCVVHETAACSVRDSTDSCRHRRRHFRNNAPQRPCASLLVDSTXXXXXXXXXXXXXXXAKNFVSDEFPVPHPKTL---LFPAAGRDDDGDARACVGSSAAAAADAAVANIRRALLMRVSYGGMAFDQALLKGACLAWGERCGHSNHCALCGDPLCLPSPPRPPSVPGPSAPEAAASIVPFGYAHKSVLSALEGNGWTAFLAAAHQGAGMPPALRLQLLAHVAGTGNGVGEERAGEAEGAVRPRGSERERKMGGSGMATTTGRSMLLQPNRLGPIIREADAILSGVDFHCSGVIDELLKSTSVAARVGEAIHRCCGIRRNKKRKTQPSQVGAVVVPGLTPATAAASGAAASGGLNGESKGEGRRGVPVRSNSGGGGAVVRNTCPPTGTDGNAHGGSDEESVGVRHAAKQAMWTCSGGLNVRRLRVAF-----------SSGEGDAGVCRDDEXXXXXXXXXXXXXXXXXXXXXXXXWSSPGFLKETV-AVGPGEGDYLSQGSRDGGXXXXXXXXXXXEPPSDMDSMVWTAMSSDVLGWTRKFVRARLARG 3237
V G+ P GDDNAGLKA RP QSLSRLPVAVVKSMLQKNIRRG+AEAAVRCALELALKSWSDAIRRVLVIIVEDSLLHP+AP+LTWLMVATSKGYRPPLRLLEAFLCVVHETAAC V ++S + + AS + T K V+ + P P FP A R D DA G++N L + PFGYAH+SVLSALEGNGWTAFL AAH G GMPPALR +LAHV G G+G ERAG+ + +T S PNRLGPIIREADAILSGVDFHCSGV+DELL+ST+VAARVG+AI G R N + S++ E VGVR AAKQAMW CS G+N RRLRVAF EG+ G C SSPG+L+ET VG GE D +S +GG S +D+ VW AMSSDV GWT KFVR RL+RG
Sbjct: 18 VTRGVTPTGGDDNAGLKAARPAQSLSRLPVAVVKSMLQKNIRRGRAEAAVRCALELALKSWSDAIRRVLVIIVEDSLLHPAAPLLTWLMVATSKGYRPPLRLLEAFLCVVHETAACPVTGGSNS----------SFLEGEKASTSGEGTVLAKGSGSTD------KTPVTSQRQPPSPPRFDHKTFPLA-RPRDQDA--------------------------------------------------GYANREDLVD------------------------ILQPFGYAHESVLSALEGNGWTAFLVAAHAGTGMPPALRTHVLAHVVGVGSGRAGERAGDMKQKSXXXXXXXXXXXXXXXXXMSTAASTATPPNRLGPIIREADAILSGVDFHCSGVLDELLRSTAVAARVGKAISESRGPRSNDVGDSASSEL--------------------------------------------------------------------ELVGVRQAAKQAMWACSSGINTRRLRVAFLREAGEESEETEVAEGNGGCCL----------------------------SSPGYLEETERVVGVGE-DGVSLPVGNGGGSS-----------SGIDARVWAAMSSDVSGWTTKFVRGRLSRG 473
BLAST of mRNA_P-littoralis_Contig102.105.4 vs. uniprot
Match: A0A835ZBZ5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBZ5_9STRA) HSP 1 Score: 92.8 bits (229), Expect = 7.480e-19 Identity = 43/78 (55.13%), Postives = 59/78 (75.64%), Query Frame = 1 Query: 1438 IRRGKAEAAVRCALELALKSWSDAIRRVLVIIVEDSLLHPSAPVLTWLMVATSKGYRPPLRLLEAFLCVVHETAACSV 1671
+RRG+ E AVRCA ELA+KS++D +RR+ +I +EDS+LHP+ P+LTWLM A KGY PP + A L VVHE + C++
Sbjct: 1 MRRGRGEGAVRCAAELAMKSFADLVRRLGIICLEDSVLHPALPLLTWLMAAAGKGYIPPEPAVAACLAVVHEVSGCTL 78
BLAST of mRNA_P-littoralis_Contig102.105.4 vs. uniprot
Match: A0A835Z044_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z044_9STRA) HSP 1 Score: 95.9 bits (237), Expect = 4.910e-17 Identity = 48/86 (55.81%), Postives = 63/86 (73.26%), Query Frame = 1 Query: 1420 SMLQKNIRRGKAEAAVRCALELALKSWSDAIRRVLVIIVEDSLLHPSAPVLTWLMVATSKGYRPPLRLLEAFLCVVHETAACSVRD 1677
S LQKN+RRG EAAVRCA EL KS++ RR+ +I+VED +LHP+ P++ W MVATSKG+ P L+ A L VVHE +AC+ +D
Sbjct: 102 SFLQKNVRRGYCEAAVRCAAELMSKSFNQFARRLCIIMVEDVILHPALPLIVWCMVATSKGFVPSPLLVAACLGVVHEISACATKD 187
BLAST of mRNA_P-littoralis_Contig102.105.4 vs. uniprot
Match: A0A448ZPZ8_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZPZ8_9STRA) HSP 1 Score: 93.6 bits (231), Expect = 7.110e-16 Identity = 54/96 (56.25%), Postives = 67/96 (69.79%), Query Frame = 1 Query: 1393 SRLPVAVVKSMLQKNIRRGKAEAAVRCALELALKSWSDAIRRVLVIIVEDSLLHPSAPVLTWLMVATSKGYRPPLRLLEAFLCVVHETAACSVRDS 1680
SRL V V+KS+LQK+IRR K +VR A ELA KS D +RR+ +II+EDS LHPS P L WLM+A SK Y PL LL+ L +V E A+C +DS
Sbjct: 101 SRLSVPVLKSILQKSIRRRKPLPSVRVASELADKSLGDLLRRLPIIILEDSTLHPSFPFLVWLMMADSKNYHLPLFLLKRVLGIVFEMASCRWQDS 196
BLAST of mRNA_P-littoralis_Contig102.105.4 vs. uniprot
Match: A0A6U3V913_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A6U3V913_9STRA) HSP 1 Score: 92.8 bits (229), Expect = 2.090e-15 Identity = 56/114 (49.12%), Postives = 71/114 (62.28%), Query Frame = 1 Query: 1366 KAVRPNQSLSRLPVAVVKSMLQKNIRRGKAEAAVRCALELALKSWSDAIRRVLVIIVEDSLLHPSAPVLTWLMVATSKGYRPPLRLLEAFLCVVHETAACSVRD-----STDSC 1692
K R Q SRL ++ +KS LQK+IRR AVR A+ELA KSW+D IRR+ +II+EDS LHP +L WLM+A SKGY P L+ L +V E A+C +D S D C
Sbjct: 263 KLPRLVQRHSRLSISHLKSCLQKSIRRRAPLPAVRVAMELADKSWTDLIRRLPIIILEDSTLHPDFSLLAWLMIADSKGYVPSKELIVRVLQIVFEMASCPWQDGIEEHSNDDC 376
BLAST of mRNA_P-littoralis_Contig102.105.4 vs. uniprot
Match: A0A7S4AVJ5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4AVJ5_9STRA) HSP 1 Score: 92.8 bits (229), Expect = 2.690e-15 Identity = 53/96 (55.21%), Postives = 68/96 (70.83%), Query Frame = 1 Query: 1393 SRLPVAVVKSMLQKNIRRGKAEAAVRCALELALKSWSDAIRRVLVIIVEDSLLHPSAPVLTWLMVATSKGYRPPLRLLEAFLCVVHETAACSVRDS 1680
SRL V V+KS+LQK+IRR K +VR A ELA KS D +RR+ +II+EDS LHPS P L WLM+A SK ++ PL LL+ L +V E A+C +DS
Sbjct: 315 SRLSVPVLKSILQKSIRRRKPLPSVRVASELADKSLGDLLRRLPIIILEDSTLHPSFPFLVWLMMAISKDFQLPLSLLKRVLGIVFEMASCRWQDS 410
BLAST of mRNA_P-littoralis_Contig102.105.4 vs. uniprot
Match: A0A7S1BMU8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BMU8_9STRA) HSP 1 Score: 83.2 bits (204), Expect = 8.100e-15 Identity = 49/86 (56.98%), Postives = 60/86 (69.77%), Query Frame = 1 Query: 1342 SGDDNAGLKAVRPNQSLSRLPVAVVKSMLQKNIRRGKAEAAVRCALELALKSWSDAIRRVLVIIVEDSLLHPSAPVLTWLMVATSK 1599
+G D A R S SRL V V+KSMLQK +RR +A AVR A+ELA KSW D IRR+ VI+VEDS+LHP P++ WLM+A SK
Sbjct: 15 AGLDATAATARRLIVSPSRLSVPVLKSMLQKCVRRRRALPAVRIAMELAQKSWRDFIRRLPVIMVEDSMLHPDLPLVVWLMMAESK 100
BLAST of mRNA_P-littoralis_Contig102.105.4 vs. uniprot
Match: A0A7R9U3T9_9STRA (Hypothetical protein (Fragment) n=2 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U3T9_9STRA) HSP 1 Score: 89.4 bits (220), Expect = 1.190e-14 Identity = 47/101 (46.53%), Postives = 66/101 (65.35%), Query Frame = 1 Query: 1378 PNQSLSRLPVAVVKSMLQKNIRRGKAEAAVRCALELALKSWSDAIRRVLVIIVEDSLLHPSAPVLTWLMVATSKGYRPPLRLLEAFLCVVHETAACSVRDS 1680
P + SR+P +V+KS LQK +RR K+ A+R A+ LA + +RR+ VI+ ED++LHP+ P+L WLM+A SKGY P L A L +VHE A V D+
Sbjct: 154 PQAARSRVPASVLKSCLQKAVRRRKSVPALRLAMGLAFIDFEALVRRLCVIMAEDAVLHPALPLLVWLMMACSKGYVPVFADLYAILAIVHEVALTRVHDN 254
BLAST of mRNA_P-littoralis_Contig102.105.4 vs. uniprot
Match: A0A7S0CK82_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CK82_9STRA) HSP 1 Score: 88.2 bits (217), Expect = 2.910e-14 Identity = 46/95 (48.42%), Postives = 66/95 (69.47%), Query Frame = 1 Query: 1393 SRLPVAVVKSMLQKNIRRGKAEAAVRCALELALKSWSDAIRRVLVIIVEDSLLHPSAPVLTWLMVATSKGYRPPLRLLEAFLCVVHETAACSVRD 1677
SRL + V+KS+LQK+IRR + +VR A+EL KS+ D IRR+ +II+EDS+LHP P L W MV+ SKG+ P ++E L +V++ A+C D
Sbjct: 67 SRLSIPVLKSILQKSIRRRRPMPSVRIAMELIDKSYGDFIRRLPIIILEDSILHPQFPFLVWNMVSYSKGFVPAPNIVECILRIVYDVASCPWHD 161 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig102.105.4 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig102.105.4 >prot_P-littoralis_Contig102.105.4 ID=prot_P-littoralis_Contig102.105.4|Name=mRNA_P-littoralis_Contig102.105.4|organism=Pylaiella littoralis U1_48|type=polypeptide|length=1040bp MERNAFASLFSQPHPQQGNNSSRKKSNNKSTTNTHVSKPSRRAPPSTSSPback to top mRNA from alignment at P-littoralis_Contig102:491067..496384+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig102.105.4 ID=mRNA_P-littoralis_Contig102.105.4|Name=mRNA_P-littoralis_Contig102.105.4|organism=Pylaiella littoralis U1_48|type=mRNA|length=5318bp|location=Sequence derived from alignment at P-littoralis_Contig102:491067..496384+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig102:491067..496384+ >mRNA_P-littoralis_Contig102.105.4 ID=mRNA_P-littoralis_Contig102.105.4|Name=mRNA_P-littoralis_Contig102.105.4|organism=Pylaiella littoralis U1_48|type=CDS|length=3120bp|location=Sequence derived from alignment at P-littoralis_Contig102:491067..496384+ (Pylaiella littoralis U1_48)back to top |