mRNA_P-littoralis_Contig1019.2.1 (mRNA) Pylaiella littoralis U1_48
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_P-littoralis_Contig1019.2.1 vs. uniprot
Match: A0A6H5JTB8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTB8_9PHAE) HSP 1 Score: 125 bits (314), Expect = 7.290e-31 Identity = 56/130 (43.08%), Postives = 85/130 (65.38%), Query Frame = 1 Query: 4 CCVDMRPFSMAHRAGFQYFVGGLSPAYVTETIHKSTLSNILDALAADVRANLITKLKDHVDSCKKLGWGGPFFGVQSDLTSTHGTEFCTLTVSFIPRGHTEMERLTLTTKAFPGTHTASDVDPWIREVSL 393 CC+D+RP + GF+ F+G LSP YVT T+ KST + LD L V ++++ +L+ + +G+ GPF G Q DLT+ G E+ T TV+F+ +G T+M R+ L +AFPG+HTA D+ PWI +++L Sbjct: 21 CCIDLRPEQLRFDQGFKLFLGSLSPEYVTTTMAKSTFNQTLDELYGTVLSSVVGELRTLREENLGMGYSGPFLGAQLDLTTAAGEEYITFTVTFVKKGDTDMTRIALAARAFPGSHTAEDIQPWIEKLTL 150
BLAST of mRNA_P-littoralis_Contig1019.2.1 vs. uniprot
Match: A0A6H5JGG8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGG8_9PHAE) HSP 1 Score: 125 bits (314), Expect = 9.060e-31 Identity = 56/130 (43.08%), Postives = 85/130 (65.38%), Query Frame = 1 Query: 4 CCVDMRPFSMAHRAGFQYFVGGLSPAYVTETIHKSTLSNILDALAADVRANLITKLKDHVDSCKKLGWGGPFFGVQSDLTSTHGTEFCTLTVSFIPRGHTEMERLTLTTKAFPGTHTASDVDPWIREVSL 393 CC+D+RP + GF+ F+G LSP YVT T+ KST + LD L V ++++ +L+ + +G+ GPF G Q DLT+ G E+ T TV+F+ +G T+M R+ L +AFPG+HTA D+ PWI +++L Sbjct: 216 CCIDLRPEQLRFDQGFKLFLGSLSPEYVTTTMAKSTFNQTLDELYGTVLSSVVGELRTLREENLGMGYSGPFLGAQLDLTTAAGEEYITFTVTFVKKGDTDMTRIALAARAFPGSHTAEDIQPWIEKLTL 345
BLAST of mRNA_P-littoralis_Contig1019.2.1 vs. uniprot
Match: A0A6H5JRT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRT6_9PHAE) HSP 1 Score: 123 bits (308), Expect = 5.820e-30 Identity = 54/129 (41.86%), Postives = 81/129 (62.79%), Query Frame = 1 Query: 4 CCVDMRPFSMAHRAGFQYFVGGLSPAYVTETIHKSTLSNILDALAADVRANLITKLKDHVDSCKKLGWGGPFFGVQSDLTSTHGTEFCTLTVSFIPRGHTEMERLTLTTKAFPGTHTASDVDPWIREVS 390 CC+++RP M H GF+ F+G LSP YV T+ T LD L + V+ +++ L+ + C +G+ G F G Q DLT+ G E+ T TVS++ +G T++ R+ L +AFPGTHTA D+ PWI E++ Sbjct: 214 CCINLRPQQMRHDDGFKLFLGALSPDYVESTMSNDTFDKNLDTLYSRVKTSIVDDLRTLREECLGMGYSGAFLGAQLDLTTVAGEEYITFTVSYVEKGSTDVTRVALACRAFPGTHTADDISPWIEELT 342
BLAST of mRNA_P-littoralis_Contig1019.2.1 vs. uniprot
Match: A0A6H5KVP4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVP4_9PHAE) HSP 1 Score: 122 bits (307), Expect = 8.310e-30 Identity = 55/127 (43.31%), Postives = 82/127 (64.57%), Query Frame = 1 Query: 4 CCVDMRPFSMAHRAGFQYFVGGLSPAYVTETIHKSTLSNILDALAADVRANLITKLKDHVDSCKKLGWGGPFFGVQSDLTSTHGTEFCTLTVSFIPRGHTEMERLTLTTKAFPGTHTASDVDPWIRE 384 CC+D+RP + GF+ F+G LSP YVT T+ KST + LD L V ++++ +L+ + +G+ GPF G Q DLT+ G E+ T TV+F+ +G T+M R+ L +AFPG+HTA D+ PWI + Sbjct: 1300 CCIDLRPEQLRFDQGFKLFLGSLSPEYVTTTMAKSTFNQTLDELYGTVLSSVVGELRTLREENLGMGYSGPFLGAQLDLTTAAGEEYITFTVTFVKKGDTDMTRIALAARAFPGSHTAEDIQPWIEK 1426
BLAST of mRNA_P-littoralis_Contig1019.2.1 vs. uniprot
Match: A0A6H5JZU3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZU3_9PHAE) HSP 1 Score: 122 bits (306), Expect = 8.910e-30 Identity = 53/130 (40.77%), Postives = 84/130 (64.62%), Query Frame = 1 Query: 4 CCVDMRPFSMAHRAGFQYFVGGLSPAYVTETIHKSTLSNILDALAADVRANLITKLKDHVDSCKKLGWGGPFFGVQSDLTSTHGTEFCTLTVSFIPRGHTEMERLTLTTKAFPGTHTASDVDPWIREVSL 393 CC+++RP M + GF+ FVG LSP YV T+ +T + +LD L ++ ++ L+ + C +G+GG F G Q DLT+ G E+ T VS++ +G T++ R++L T+AFPG+HTA D+ PWI ++L Sbjct: 25 CCINLRPMQMRYDDGFKLFVGALSPQYVDTTMAATTFNKLLDTLHDRMKQAVVDDLRSVREECLGMGYGGAFLGAQLDLTTVAGEEYITFAVSYVKKGDTDVSRVSLATRAFPGSHTADDIKPWIEALTL 154
BLAST of mRNA_P-littoralis_Contig1019.2.1 vs. uniprot
Match: A0A6H5JQI6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQI6_9PHAE) HSP 1 Score: 121 bits (304), Expect = 1.690e-29 Identity = 54/130 (41.54%), Postives = 82/130 (63.08%), Query Frame = 1 Query: 4 CCVDMRPFSMAHRAGFQYFVGGLSPAYVTETIHKSTLSNILDALAADVRANLITKLKDHVDSCKKLGWGGPFFGVQSDLTSTHGTEFCTLTVSFIPRGHTEMERLTLTTKAFPGTHTASDVDPWIREVSL 393 CC++ RP M + GF+ FVG LSP YV T+ +T + +LD L V ++ L+ + C +G+GG F G Q DLT+ G E+ T VS++ +G T++ R++L T+AFPG+HTA D+ PWI ++L Sbjct: 25 CCINPRPMQMRYDDGFKLFVGALSPQYVDTTMASTTFNKLLDTLHDRVEQAVVDDLRSVREECLGMGYGGAFLGAQLDLTTVAGEEYITFAVSYVKKGDTDVSRVSLATRAFPGSHTADDIKPWIEALTL 154
BLAST of mRNA_P-littoralis_Contig1019.2.1 vs. uniprot
Match: A0A6H5KFJ9_9PHAE (Fanconi-associated nuclease n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFJ9_9PHAE) HSP 1 Score: 117 bits (293), Expect = 6.230e-28 Identity = 53/127 (41.73%), Postives = 77/127 (60.63%), Query Frame = 1 Query: 7 CVDMRPFSMAHRAGFQYFVGGLSPAYVTETIHKSTLSNILDALAADVRANLITKLKDHVDSCKKLGWGGPFFGVQSDLTSTHGTEFCTLTVSFIPRGHTEMERLTLTTKAFPGTHTASDVDPWIREV 387 C+++RP M H GF+ F+G LSP YV T+ T LD L V +++ L+ + C +G+ G F G Q DLT+ G E+ T TVS++ +G T++ R+ L +AFPGTHTA D+ PWI E+ Sbjct: 331 CINLRPQQMRHDDGFKLFLGALSPDYVESTMSNDTFDKNLDTLYGKVNTSVVDDLRTLREECLGMGYSGAFLGAQLDLTTVAGEEYITFTVSYVKKGSTDVTRVALACRAFPGTHTADDIRPWIEEL 457
BLAST of mRNA_P-littoralis_Contig1019.2.1 vs. uniprot
Match: A0A6H5KJ52_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ52_9PHAE) HSP 1 Score: 110 bits (276), Expect = 1.200e-25 Identity = 52/131 (39.69%), Postives = 82/131 (62.60%), Query Frame = 1 Query: 4 CCVDMRPFSMAHRAGFQYFVGGLSPAYVTETIHKSTLSNILDALAADVRANLITKLKDHVDSCKKLGWGGPFFGVQSDLTSTHGTEFCTLTVSFIPRGHTEMERLTLTTKAFPGTHTASDVDPWIREVSLS 396 C ++MRP +M + G++ +G L P YV T+ +T ++IL + + + T L+ H +SC KLG+ GPF G Q DLT+ E+ T +VS+I T + R+ L T+AFPG+HTA+D++PWI + S + Sbjct: 196 CAINMRPQNMRYDDGYKLHMGMLCPKYVESTMSDATFNSILSTIYTETCDAVKTGLRLHRESCVKLGYVGPFLGAQLDLTTVANEEYITFSVSYIAEAATTITRVGLATRAFPGSHTAADIEPWIEKASFT 326
BLAST of mRNA_P-littoralis_Contig1019.2.1 vs. uniprot
Match: A0A6H5JXV5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXV5_9PHAE) HSP 1 Score: 109 bits (273), Expect = 2.200e-25 Identity = 53/131 (40.46%), Postives = 82/131 (62.60%), Query Frame = 1 Query: 4 CCVDMRPFSMAHRAGFQYFVGGLSPAYVTETIHKSTLSNILDALAADVRANLITKLKDHVDSCKKLGWGGPFFGVQSDLTSTHGTEFCTLTVSFIPRGHTE-MERLTLTTKAFPGTHTASDVDPWIREVSL 393 CC+++RP M + GF+ FVG LSP YV T+ +T + +LDAL V+ ++ L+ + +G+GG F G DLT+ E+ T TVS++ +G T+ + R+ L T+AFPG+HTA D+ PWI ++L Sbjct: 21 CCINLRPQQMRYDDGFKLFVGVLSPQYVDTTMASTTFNKVLDALYDRVKQAIMDDLRLLREEFLGMGYGGAFLGAHLDLTTVANEEYITFTVSYVKKGKTDDVTRVALATRAFPGSHTAEDIKPWIEALTL 151
BLAST of mRNA_P-littoralis_Contig1019.2.1 vs. uniprot
Match: D7G031_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G031_ECTSI) HSP 1 Score: 71.6 bits (174), Expect = 6.580e-12 Identity = 51/177 (28.81%), Postives = 76/177 (42.94%), Query Frame = 1 Query: 1 MCCVD-MRPFSMAHRAGFQYFVGGLSPAY-------------------------VTETIHKS----TLSNILDALAADVRANLITKLKDHVDSCKKLGWGGPFFGVQSDLTSTHG--------------TEFCTLTVSFIPRGHTEMERLTLTTKAFPGTHTASDVDPWIREVSLSI 399 MC + + P S+ G + FVGGL+P Y VTE + + T + IL L A VR + + L+ H +SC++LGW GPF G+Q D T G E CT +VSF+ + RL + + F G + + WIRE++ + Sbjct: 137 MCALQTLDPGSLCSDLGHRLFVGGLAPGYGAGRRLARRRSGLAPSGSSYAASTAVTEGANGARAAGTANAILQDLCAGVRREVASALRAHSESCRRLGWSGPFVGLQVDSTGLPGGEGXXXXXXXXXXXEEVCTASVSFVSEDFGGLVRLAIGARCFRGRQMSHAKETWIRELTADL 313 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1019.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 10 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig1019.2.1 >prot_P-littoralis_Contig1019.2.1 ID=prot_P-littoralis_Contig1019.2.1|Name=mRNA_P-littoralis_Contig1019.2.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=134bp MCCVDMRPFSMAHRAGFQYFVGGLSPAYVTETIHKSTLSNILDALAADVRback to top mRNA from alignment at P-littoralis_Contig1019:9917..10318- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig1019.2.1 ID=mRNA_P-littoralis_Contig1019.2.1|Name=mRNA_P-littoralis_Contig1019.2.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=402bp|location=Sequence derived from alignment at P-littoralis_Contig1019:9917..10318- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig1019:9917..10318- >mRNA_P-littoralis_Contig1019.2.1 ID=mRNA_P-littoralis_Contig1019.2.1|Name=mRNA_P-littoralis_Contig1019.2.1|organism=Pylaiella littoralis U1_48|type=CDS|length=402bp|location=Sequence derived from alignment at P-littoralis_Contig1019:9917..10318- (Pylaiella littoralis U1_48)back to top |