mRNA_P-littoralis_Contig1017.20.1 (mRNA) Pylaiella littoralis U1_48
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig1017.20.1 vs. uniprot
Match: A0A6H5J7P3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7P3_9PHAE) HSP 1 Score: 72.0 bits (175), Expect = 1.740e-12 Identity = 34/56 (60.71%), Postives = 41/56 (73.21%), Query Frame = 2 Query: 293 KEEGGKYDNLSYVLARTIRSNLHQEAAKLIGCTGMGNQCKRGQCFARAMQVFPGKG 460
KE + DN+SYVLART+R L AA+ IG +G GNQC+RG CFARAM +F GKG
Sbjct: 153 KERDSQGDNVSYVLARTVRRILQYLAAQEIGASGQGNQCRRGDCFARAMGMFFGKG 208
BLAST of mRNA_P-littoralis_Contig1017.20.1 vs. uniprot
Match: D8LNQ5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNQ5_ECTSI) HSP 1 Score: 56.2 bits (134), Expect = 7.360e-7 Identity = 27/52 (51.92%), Postives = 33/52 (63.46%), Query Frame = 2 Query: 293 KEEGGKYDNLSYVLARTIRSNLHQEAAKLIGCTGMGNQCKRGQCFARAMQVF 448
K + DN+ YVLART+RSNL AA+ IG TG GNQC+RG +R V
Sbjct: 120 KARDSEGDNVPYVLARTVRSNLQYLAAQEIGATGQGNQCRRGMFCSRYGHVL 171 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1017.20.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig1017.20.1 >prot_P-littoralis_Contig1017.20.1 ID=prot_P-littoralis_Contig1017.20.1|Name=mRNA_P-littoralis_Contig1017.20.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=82bp MRGCRRVRMRGASPEVGQATPQPDDNLRQSTGLPRVSTTTTTTVDNQGVLback to top mRNA from alignment at P-littoralis_Contig1017:62589..63693- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig1017.20.1 ID=mRNA_P-littoralis_Contig1017.20.1|Name=mRNA_P-littoralis_Contig1017.20.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1105bp|location=Sequence derived from alignment at P-littoralis_Contig1017:62589..63693- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig1017:62589..63693- >mRNA_P-littoralis_Contig1017.20.1 ID=mRNA_P-littoralis_Contig1017.20.1|Name=mRNA_P-littoralis_Contig1017.20.1|organism=Pylaiella littoralis U1_48|type=CDS|length=246bp|location=Sequence derived from alignment at P-littoralis_Contig1017:62589..63693- (Pylaiella littoralis U1_48)back to top |