mRNA_P-littoralis_Contig1017.1.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1017.1.1
Unique NamemRNA_P-littoralis_Contig1017.1.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig1017.1.1 vs. uniprot
Match: A0A6H5JR14_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR14_9PHAE)

HSP 1 Score: 161 bits (408), Expect = 1.680e-43
Identity = 75/102 (73.53%), Postives = 90/102 (88.24%), Query Frame = 1
Query:  103 RPRYARKKGLDKKAGYITSADDSKLEELMDILRFFEKWRCNLEEKTTVGDVTWKKHFITEYSWTDIRVSILGFVSMCRYLFEDDSRFKVSRPRDTPRYVNPR 408
            R  YAR+ GLDK+AGYI+SADDSKLEEL++++RFF+KWR +L+EKTT+GD TWKKHFITE+SWTDIRV ILGFVSMCRYLFE+DSRFKVS  R  P ++N R
Sbjct:  554 RSEYARRNGLDKEAGYISSADDSKLEELINMVRFFDKWRSSLQEKTTMGDETWKKHFITEFSWTDIRVCILGFVSMCRYLFEEDSRFKVSPRRPWPHFINQR 655          
BLAST of mRNA_P-littoralis_Contig1017.1.1 vs. uniprot
Match: A0A6H5JTX6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTX6_9PHAE)

HSP 1 Score: 137 bits (345), Expect = 8.960e-38
Identity = 67/99 (67.68%), Postives = 77/99 (77.78%), Query Frame = 1
Query:  112 YARKKGLDKKAGYITSADDSKLEELMDILRFFEKWRCNLEEKTTVGDVTWKKHFITEYSWTDIRVSILGFVSMCRYLFEDDSRFKVSRPRDTPRYVNPR 408
            YARK GLDK  GY  SADDSKLE LMDILRFF++WR +LE + T+GD  WK HFIT++SWTDIRV ILG VSMCRYLFE DSRFK+    D P ++N R
Sbjct:   44 YARKNGLDKMVGYTGSADDSKLEGLMDILRFFDEWRASLEARPTLGD--WKAHFITDHSWTDIRVCILGTVSMCRYLFEKDSRFKIYPLSDVPHFINLR 140          
BLAST of mRNA_P-littoralis_Contig1017.1.1 vs. uniprot
Match: A0A6H5JRH8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRH8_9PHAE)

HSP 1 Score: 136 bits (342), Expect = 1.910e-34
Identity = 63/100 (63.00%), Postives = 77/100 (77.00%), Query Frame = 1
Query:  112 YARKKGLDKKAGYITSADDSKLEELMDILRFFEKWRCNLEEKTTVGDVTWKKHFITEYSWTDIRVSILGFVSMCRYLFEDDSRFKVSRPRDTPRYVNPRH 411
            YARK GLDK   YI SADDSKLEE+MDIL  F++WR +LE + T+GD  WK HFIT++SWTDIRV ILG VSMCRY+FE+DS FK+    D P ++N R+
Sbjct:  434 YARKNGLDKMVSYIRSADDSKLEEVMDILLLFDEWRASLEARPTLGDGAWKAHFITDHSWTDIRVCILGTVSMCRYVFEEDSTFKIPPLSDVPHFINLRY 533          
BLAST of mRNA_P-littoralis_Contig1017.1.1 vs. uniprot
Match: A0A6H5JZW9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZW9_9PHAE)

HSP 1 Score: 111 bits (278), Expect = 3.880e-29
Identity = 51/76 (67.11%), Postives = 60/76 (78.95%), Query Frame = 1
Query:  145 GYITSADDSKLEELMDILRFFEKWRCNLEEKTTVGDVTWKKHFITEYSWTDIRVSILGFVSMCRYLFEDDSRFKVS 372
            GYI S DDSKL+ELMDIL FF++WR +LE + T+GD  WK HFIT++ WTD RV ILG V MCRYL E DSRFK+S
Sbjct:    3 GYIRSTDDSKLDELMDILWFFDEWRASLEARPTLGDGAWKAHFITDHLWTDSRVCILGTVRMCRYLIEKDSRFKIS 78          
BLAST of mRNA_P-littoralis_Contig1017.1.1 vs. uniprot
Match: A0A6H5KH17_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH17_9PHAE)

HSP 1 Score: 105 bits (263), Expect = 1.690e-26
Identity = 50/71 (70.42%), Postives = 58/71 (81.69%), Query Frame = 1
Query:  112 YARKKGLDKKAGYITSADDSKLEELMDILRFFEKWRCNLEEKTTVGDVTWKKHFITEYSWTDIRVSILGFV 324
            YARK GLDK  GYI SADDSKLEELMDILRFF++WR +LE + T+G   WK +FIT++SWTDIRV ILG V
Sbjct:   31 YARKNGLDKMVGYIRSADDSKLEELMDILRFFDEWRASLEARPTLGGRAWKAYFITDHSWTDIRVCILGTV 101          
BLAST of mRNA_P-littoralis_Contig1017.1.1 vs. uniprot
Match: A0A6H5K5I6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5I6_9PHAE)

HSP 1 Score: 94.7 bits (234), Expect = 7.440e-21
Identity = 52/111 (46.85%), Postives = 72/111 (64.86%), Query Frame = 1
Query:  103 RPRYARKKGLDKKAGYITSADDSKLEELMDILRFFEKWRCNLEEK---TTVGD-VTWKKHFITEYSWTDIRVSILGFVSMCRYLFEDDSRFKV-SRPRDTPRYVNPRHHCQ 420
            R +  RK G  K  G I S + + ++ L++IL FF+ W+  LE K   +  GD + WKKHFIT  SW D+R+SILGFVSMCRYLFED  RF++ S   +  R+++PR+  Q
Sbjct:   69 RSKVDRKDGSKKMVGCIRSFESAPMDRLLEILEFFDDWQSTLERKHIPSGEGDKLGWKKHFITHQSWFDLRLSILGFVSMCRYLFEDPERFQIDSLSPNCRRFLSPRNCSQ 179          
BLAST of mRNA_P-littoralis_Contig1017.1.1 vs. uniprot
Match: A0A6H5JNK0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNK0_9PHAE)

HSP 1 Score: 86.3 bits (212), Expect = 8.600e-20
Identity = 41/61 (67.21%), Postives = 51/61 (83.61%), Query Frame = 1
Query:  145 GYITSADDSKLEELMDILRFFEKWRCNLEEKTTVGDVTWKKHFITEYSWTDIRVSILGFVS 327
            GYI SAD SKLE LMDILRFF++WR +LE + T+GD TW+ HFIT++SWTDI+V ILG V+
Sbjct:    3 GYIRSADRSKLE-LMDILRFFDEWRASLEARPTLGDGTWEAHFITDHSWTDIQVCILGTVA 62          
BLAST of mRNA_P-littoralis_Contig1017.1.1 vs. uniprot
Match: A0A6H5K7Z3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7Z3_9PHAE)

HSP 1 Score: 91.3 bits (225), Expect = 1.070e-18
Identity = 42/79 (53.16%), Postives = 57/79 (72.15%), Query Frame = 1
Query:  118 RKKGLDKKAGYITSADDSKLEELMDILRFFEKWRCNLEEKTTVGDVTWKKHFITEYSWTDIRVSILGFVSMCRYLFEDD 354
            RK+G +K+ GYIT AD   L  L++IL FF+ W+ +LE     G   W  HFIT+YSWTD+R +ILGFV+MCRY+F+D+
Sbjct:  483 RKQGGNKRKGYITGADSPLLGRLLEILEFFDSWQVSLEAH--FGPKEWANHFITDYSWTDMRTTILGFVAMCRYVFKDE 559          
BLAST of mRNA_P-littoralis_Contig1017.1.1 vs. uniprot
Match: A0A6H5K095_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K095_9PHAE)

HSP 1 Score: 75.9 bits (185), Expect = 7.770e-16
Identity = 34/49 (69.39%), Postives = 41/49 (83.67%), Query Frame = 1
Query:  142 AGYITSADDSKLEELMDILRFFEKWRCNLEEKTTVGDVTWKKHFITEYS 288
            AGYI SADDSKLEELMDILRF  +WR +LE ++T+GD  WK HFIT++S
Sbjct:    2 AGYIRSADDSKLEELMDILRFLGEWRASLEARSTLGDCAWKAHFITDHS 50          
BLAST of mRNA_P-littoralis_Contig1017.1.1 vs. uniprot
Match: A0A6H5K071_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K071_9PHAE)

HSP 1 Score: 54.7 bits (130), Expect = 6.250e-6
Identity = 29/77 (37.66%), Postives = 46/77 (59.74%), Query Frame = 1
Query:  124 KGLDKKAGYITSADDSKLEELMDILRFFEKWRCNLEEKTTVGDVTWKKHFITEYSWTDIRVSILGFVSMCRYLFEDD 354
            K +D +   ITS D   L+ L++IL +F+ W  +L       D+     F+ + +W D+R++ILGFV+M RY+F DD
Sbjct:  502 KRIDIRKSCITSKDSPLLDRLLEILEWFDTWWQDLN-LFGGSDLALDDLFLPDQTWDDLRLTILGFVAMTRYVFGDD 577          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1017.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A6H5JR14_9PHAE1.680e-4373.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTX6_9PHAE8.960e-3867.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRH8_9PHAE1.910e-3463.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JZW9_9PHAE3.880e-2967.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KH17_9PHAE1.690e-2670.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K5I6_9PHAE7.440e-2146.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JNK0_9PHAE8.600e-2067.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K7Z3_9PHAE1.070e-1853.16Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K095_9PHAE7.770e-1669.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K071_9PHAE6.250e-637.66Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1017contigP-littoralis_Contig1017:623..2075 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size421
Hectar predicted targeting categoryother localisation
Exons2
Cds size420
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789355.970463-CDS-P-littoralis_Contig1017:622..7331680789355.970463-CDS-P-littoralis_Contig1017:622..733Pylaiella littoralis U1_48CDSP-littoralis_Contig1017 623..733 +
1680789355.9787056-CDS-P-littoralis_Contig1017:1766..20751680789355.9787056-CDS-P-littoralis_Contig1017:1766..2075Pylaiella littoralis U1_48CDSP-littoralis_Contig1017 1767..2075 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1017.1.1prot_P-littoralis_Contig1017.1.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1017 623..2075 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1017.1.1

>prot_P-littoralis_Contig1017.1.1 ID=prot_P-littoralis_Contig1017.1.1|Name=mRNA_P-littoralis_Contig1017.1.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=140bp
MLSTPEKDEGGPRTRSHTTPTTSDRALESDRCAPRPRYARKKGLDKKAGY
ITSADDSKLEELMDILRFFEKWRCNLEEKTTVGDVTWKKHFITEYSWTDI
RVSILGFVSMCRYLFEDDSRFKVSRPRDTPRYVNPRHHCQ
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mRNA from alignment at P-littoralis_Contig1017:623..2075+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1017.1.1 ID=mRNA_P-littoralis_Contig1017.1.1|Name=mRNA_P-littoralis_Contig1017.1.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1453bp|location=Sequence derived from alignment at P-littoralis_Contig1017:623..2075+ (Pylaiella littoralis U1_48)
ATGCTTTCGACGCCGGAGAAGGATGAGGGAGGGCCGAGGACACGATCGCA CACCACGCCCACCACGAGTGATCGTGCATTGGAGAGCGACCGCTGCGCTC CGAGACCACGAGTAAGCCTACTTCACCATAGAGTCCGGGGTGGGGGTGGC GGAGCATCTCTCCACCGTGAAGTAATGTTGTTGAGGAACACACAGAGTTC CTCATAGCTTTTTTAATAGGTGTCCCGCGTAGCACTAGCGTCGAGGGTTG ATGCCTTCATCGACATCTTCAACGGCAAGTGATAGGTGTTCGTATTGTCG CAGTATGTAGAGGGGCCTGTCGCGTGACTATGTTCCGTGCTCTCCTTTTT CCCCTGAAGTTTCCCGGCACCCGGGTACACTCTTTCTCTATACAGGGGGG GTTGTTCCGAAGTCCGGAAATACCGGCAAACGCCCTGTCTCCCGGCGCAG CTCGTGACGGAGATTTTTTTTTTTAGCTTGATTGTTGAGTTTTCATGGGC TAAAAACCCGCCACACTTGTGTTCTAACGGGATTGAACAAATATCGTAAT TTGCCAATATAATCGCTTATTATTGTTTTCAAATAAGTCTCTTAAACAGA GATATCGCACCAAAACAGCACATCGAAGACCAATATACTGTTTTATTCGA GACAACTATTCTTTCGATTTCAAAATAGACTGCGGCAAACTATTCCTCTC ATCATTGCCGCGAACTGTTTGTGGCGTTGTTGGTGGTGGTGCAGGGGGTG GTGTTTGTGTCGTTTTTGTGTGATAAAATGTGCTGTGTAATGGCTGCAAT GGATAGATTTCATGACATAGTATGCGGATGCCGGGGTGCGGAGTGCAGGA TGGGGGCTCAGTGGTGAGTTTTGGGGCCCCGTGGAACGATTCTCGCAACA AATGATGCAATTAGCCAAAAACATAAATAACTCTGCAGCTACGTATCGAC ATATCTCGACGAGGCGATCACTAATATTGTTTCACGTCCCAACGCGATTG AACAAAAAAGGAGAGCACGGACCTACTTTTTTTTTATATATTTCCTCGCG CAATGTACACACTCTGTGCGCGTCGTTTGTCTCTTCCCACACGGCCCCAT GTATGTGTACGTGTATATATTCAGGAAACTTCGGCCGCTCGGAGTACGCG CGCAAGAAAGGCCTCGACAAGAAAGCGGGCTACATTACATCGGCCGACGA CTCCAAACTAGAAGAACTCATGGACATCTTGCGTTTTTTCGAGAAGTGGC GGTGCAATCTGGAGGAGAAGACGACGGTGGGCGACGTCACCTGGAAGAAG CACTTCATCACGGAGTACTCGTGGACCGACATCCGGGTGTCCATCCTTGG CTTCGTCAGTATGTGCCGATACTTGTTCGAGGATGATTCGAGGTTCAAGG TCTCCCGCCCGCGCGACACGCCCCGCTACGTCAACCCGCGGCACCATTGC CAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig1017:623..2075+

>mRNA_P-littoralis_Contig1017.1.1 ID=mRNA_P-littoralis_Contig1017.1.1|Name=mRNA_P-littoralis_Contig1017.1.1|organism=Pylaiella littoralis U1_48|type=CDS|length=420bp|location=Sequence derived from alignment at P-littoralis_Contig1017:623..2075+ (Pylaiella littoralis U1_48)
ATGCTTTCGACGCCGGAGAAGGATGAGGGAGGGCCGAGGACACGATCGCA
CACCACGCCCACCACGAGTGATCGTGCATTGGAGAGCGACCGCTGCGCTC
CGAGACCACGATACGCGCGCAAGAAAGGCCTCGACAAGAAAGCGGGCTAC
ATTACATCGGCCGACGACTCCAAACTAGAAGAACTCATGGACATCTTGCG
TTTTTTCGAGAAGTGGCGGTGCAATCTGGAGGAGAAGACGACGGTGGGCG
ACGTCACCTGGAAGAAGCACTTCATCACGGAGTACTCGTGGACCGACATC
CGGGTGTCCATCCTTGGCTTCGTCAGTATGTGCCGATACTTGTTCGAGGA
TGATTCGAGGTTCAAGGTCTCCCGCCCGCGCGACACGCCCCGCTACGTCA
ACCCGCGGCACCATTGCCAG
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