mRNA_P-littoralis_Contig1016.6.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1016.6.1
Unique NamemRNA_P-littoralis_Contig1016.6.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1016.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1016contigP-littoralis_Contig1016:39095..39775 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size681
Hectar predicted targeting categoryother localisation
Exons1
Cds size519
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789355.7675724-UTR-P-littoralis_Contig1016:39094..392431680789355.7675724-UTR-P-littoralis_Contig1016:39094..39243Pylaiella littoralis U1_48UTRP-littoralis_Contig1016 39095..39243 -
1680789355.7861054-UTR-P-littoralis_Contig1016:39762..397751680789355.7861054-UTR-P-littoralis_Contig1016:39762..39775Pylaiella littoralis U1_48UTRP-littoralis_Contig1016 39763..39775 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789355.7761135-CDS-P-littoralis_Contig1016:39243..397621680789355.7761135-CDS-P-littoralis_Contig1016:39243..39762Pylaiella littoralis U1_48CDSP-littoralis_Contig1016 39244..39762 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1016.6.1prot_P-littoralis_Contig1016.6.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1016 39244..39762 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1016.6.1

>prot_P-littoralis_Contig1016.6.1 ID=prot_P-littoralis_Contig1016.6.1|Name=mRNA_P-littoralis_Contig1016.6.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=173bp
MQVGETPTLYFARAKTLRTKREKHGVTLSDSESNRHIARRLSSDYALQKS
MLLISDEISTETLERTVKKAHGELELERSREGQGKGVALISAAGGGRVGD
GGTHPARDGRHQKKRQQQKEMFCQYHHTHDHDDSECPAQRGWQSSQYQFE
SRGGRGVGLVEDSSRTNNRLED*
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mRNA from alignment at P-littoralis_Contig1016:39095..39775-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1016.6.1 ID=mRNA_P-littoralis_Contig1016.6.1|Name=mRNA_P-littoralis_Contig1016.6.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=681bp|location=Sequence derived from alignment at P-littoralis_Contig1016:39095..39775- (Pylaiella littoralis U1_48)
GATTAATCTGGAGATGCAAGTAGGAGAGACCCCCACTTTGTACTTTGCTC
GCGCCAAAACGCTGCGCACAAAGCGTGAAAAACATGGCGTGACACTTTCC
GATTCAGAGTCTAACAGACATATTGCCCGCCGTCTTTCGTCCGACTACGC
ACTGCAAAAGAGTATGCTTCTGATAAGTGATGAGATTTCTACAGAGACCC
TCGAACGCACAGTGAAGAAGGCGCACGGGGAGTTGGAATTGGAACGGTCG
AGGGAGGGCCAGGGCAAGGGCGTCGCCCTCATCTCTGCCGCGGGGGGCGG
CAGAGTTGGGGACGGGGGAACACATCCTGCACGGGACGGACGACACCAGA
AGAAGCGGCAGCAGCAGAAGGAGATGTTCTGCCAATACCACCACACCCAC
GATCACGACGACTCCGAATGCCCCGCGCAACGCGGATGGCAATCTTCGCA
ATATCAATTCGAGAGTCGCGGTGGACGGGGGGTTGGGCTGGTGGAAGACA
GCAGCCGCACCAACAACCGCCTGGAGGATTAGGAGGTCGTGGGGGTGCCG
GAAATGGACGGATGCAGCCCAACCCACGACAACAACAGCAGTGGCATCCT
CCGTGGGCGCGACAGCAGCAGCAATGGCGAACCGGGGAGCATGGGCCAGG
ACGAGGCTTTCCAGGAAGGTATGCAGAGTCC
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Coding sequence (CDS) from alignment at P-littoralis_Contig1016:39095..39775-

>mRNA_P-littoralis_Contig1016.6.1 ID=mRNA_P-littoralis_Contig1016.6.1|Name=mRNA_P-littoralis_Contig1016.6.1|organism=Pylaiella littoralis U1_48|type=CDS|length=519bp|location=Sequence derived from alignment at P-littoralis_Contig1016:39095..39775- (Pylaiella littoralis U1_48)
ATGCAAGTAGGAGAGACCCCCACTTTGTACTTTGCTCGCGCCAAAACGCT
GCGCACAAAGCGTGAAAAACATGGCGTGACACTTTCCGATTCAGAGTCTA
ACAGACATATTGCCCGCCGTCTTTCGTCCGACTACGCACTGCAAAAGAGT
ATGCTTCTGATAAGTGATGAGATTTCTACAGAGACCCTCGAACGCACAGT
GAAGAAGGCGCACGGGGAGTTGGAATTGGAACGGTCGAGGGAGGGCCAGG
GCAAGGGCGTCGCCCTCATCTCTGCCGCGGGGGGCGGCAGAGTTGGGGAC
GGGGGAACACATCCTGCACGGGACGGACGACACCAGAAGAAGCGGCAGCA
GCAGAAGGAGATGTTCTGCCAATACCACCACACCCACGATCACGACGACT
CCGAATGCCCCGCGCAACGCGGATGGCAATCTTCGCAATATCAATTCGAG
AGTCGCGGTGGACGGGGGGTTGGGCTGGTGGAAGACAGCAGCCGCACCAA
CAACCGCCTGGAGGATTAG
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