mRNA_P-littoralis_Contig1015.1.12 (mRNA) Pylaiella littoralis U1_48
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig1015.1.12 vs. uniprot
Match: D8LEF4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEF4_ECTSI) HSP 1 Score: 985 bits (2546), Expect = 4.620e-310 Identity = 1004/2004 (50.10%), Postives = 1137/2004 (56.74%), Query Frame = 2 Query: 26 MEEGGPCVPT-DGVNRSTDRPNLHTDSFRDDIQAIGRAVERLRDGFASAGTDTSSPKPTPVHDSARWSGLLSSSTLGSAAGEGVDVAGRQLEEVPRQQQRRRSGDPNNGSPPSPEAGRRVQQATSTSPNRELLPARGRGSERLAEGATNVEASVLDQTNASNGRLSLRELRSANEARRFYSDERAKATAEGTTTGDQEDE-VAAAPAGAGE----GALVPDEEKGLVNTGSRSSSXXXXXXXXXXXXXXXXXARGDSGRPDSSSGEXXXVRTASAAAATGLSSGKNEQDTLPRTRTQKGDLLRTRSDMSPPLLVAVDGRTAAPAAGSESSLFSLPLMGRSRSPSMRRSGGRGRNNNRGEFSVEEVGSSAASAVGXXXXXXXXXGRKTGAVGAVAGEGVKPPTESGSLFELRDALRSREKELLRLKRDVAVVATNAGGFKHLAASLGSSADMNNDEMRSFAFGHRXXXXXXXXPAYSEGVGGGTEDSNRPGSKSSPSGRSDLDSSSGFEGHGRGGAG----GKPLVAVEQKYAAGELLPWRRPDE---PATASSNFATAPPFR-TGGELSSPRQMXXXXXXRIARRQHQPSTSAISQGTDAALAVSGSPLVASAHEGLRQMRAVLEQRALEAERTKGDAKNMASFGIGLYTESLNDVSARLRRSERKRNTQVAELAAARAEADRLKSELSSVLARHRVREKAAXXXXXXXXXXXXXXXXXXXXXXXXXLLEPAQQQQLRKRDAIIGRLRDKLEAASGELSEEQAATASLRARLEASEKEARRARENATAAEEEAGVXXXXXXTARAAQXXXXXXXXXXXXXXXXXXXXXXXXXRSAEEEGRRRAREAQRARESLKAEKEGTARLALELEAAVRERTQXXXXXXXXXXXXXXXRVDLSSVSTTAEE------IQRERDTAQESLRLAVAELANITAALVLAREGQEAERGRSDRESKRAAALEEELVASEARRKVQEEEISLVRKQVSRLDAKIEGDMSREKAKSDATARASVAGAEREANLLRASLRETEAQLLASXXXXXXXXXXXXXXASLKTELVVARDTAEKAERALATAXXXXRAAEAGADAKDRQAERAAEAARQDKDTLKRGLVASQTACAELRAERLRLLSELEQAASXXXXXXXXXXXXXXPGCDSCFSSPTGGGDVGASGLRDGGGXXXXXXXXXXAHTDLEGRLALALAEAAEARAEVQRLKRKLTAC-DRQ---------YKMAAAVQVSTAQGLSEGADDDGFFLGEGRRVRRERLQEGLRESCRVMNRVATALSAAADARTGGTRSGXXXXXXXXXLDDPRWIAGKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRAFSVDSCHSGVGEGDGDRYHHHDDADSFGDTSDEGSLRNDAQRVVSRADVREVSTHLRFEAARLLGVREDERKVAEGKVARLRQDLRDSEGREAEITARLEESRELSREQTGFVEGVWKERHRLESQLAARREEVERLRAGEDAARAAATVLDGKVEDLSAALKQEQARAKREAEAAVAAEARDAMEALRKQLDDLRKEGEFQRLRAKYEKAKGRIVALEELVAASRRVSAQARREFQGALGALKMSQELLLRIHRQRQGRNNANIDSIP---------APPVSDYHHGAKAPPKPITGGAPAQXXXXXXXXXPEGQXXXXXXXXXXXXXXXXXXXXXXXXXXXXEREGERRAATETTP-SPDAHVHELASQASKLRGMSRDLKRLLQVAAGEVQGALEDTRDSLGVAAAAATATAVGTQTG-GAVAATRESVDALEEKLREVKRTAGELETERSRLGGELDEALGELSRVQGLLRDKTAEAEELEARVARLEAEGREAREGASAA-DDRLAEAEATEAQLSDTRARLDAALAVQGELRSRCAELSLASGAFAAEVAKQKEDRARS------------------------AAAEAAAERGRLERMLAATREEAQEVDSDVAQVLDALSASEKERRRLEGELERQTK 5839
MEE P VP+ D R + DSF+DDIQAIGRAVERLRDGFA GTD+SSP P P HDSA+W G LSSS L S G D +GR SGD G P R + RELLPAR S AEG T SVL++T S+GRLSLRELRSA+++R YSDERA+ + GDQ VAAA G GE G V D+E GL N G S S D G P S G + + + + R TQ LLR R D P L AV RTA+ +E L PL+ S S S+ SG + R E S SS++ G G A ESG LFELRDALRSRE++LLRLKRDV+VVAT+A GF+HL+ASLGS N + SF+F + G T+DS+ PSG G +G GGAG + A G +L R+P + P TA S A P R + EL+S R++X Q ST+ +S+G +A +A SGSPLVASAHEGL++MRAVLEQRALE R D+K MA+ SLNDVSARLRRSERKRN Q AELA XXXX XXXXXXXXXX L E AQ+ RLRD+LE A+GE AS+KE RRARE A AAEEEAG TA XXXXXXXXXXXX R REA+ + E XXXXXXXXXXXXXXX + E ++RERD++ VAE+AN+TAALVLAREGQEAERGR DRESKRAAAL EELVASEARRKVQEEEISLVRKQVSRLDAKIEGDMSR KA SDATARA+ AGAEREAN LRAS XXXXXXXXX ASLK EL AR+ AE LA A+EA A RAA AA+ DKDT LSELE AA+ XXXXXXXXX XXXXX A DLEGRLALA+AEAAE+RAE QRLKRKL A DR+ +A + G + G DDD F +G R RE LQE LRESC VM R+A+ALSAAA R R G LDDPRW G+ XXXXXXXXXXXXXXXXXXXXXXXXXXXX RAFSVDS SGVG+ D + D FGD ++ G +D +RVVSRA+VREV+ LRFEAARLLGVR++ERK A VA LR+DLRDSE REAE+TARLEESRELSREQTGFVEGVWKERHRL ERLRA EDAAR AATVLDGKV DLSAAL+QEQARAKREAEAAVAAEARDAMEALR+QLDDLRKEGEFQRLRAKYEKAKGRIVALEELVAASRRVSAQARREF+GAL ALK+SQELLLRIHRQRQ NNA D A P +HH A + GAP + GER + T+ S DAHVHELA+QASKLRGMS ++KRLLQ+AAGEVQGALEDTRDSLGVA AAA VGTQT G TR V+ LE+++ +K E E+ RL GEL A+GEL+++QGLL DK +EA LEA VARLE E EARE ASAA +D LAEAEA+ LSDT+ARL+AALA Q ELRSRCAELSLASGAFA+EVAKQKE+RARS AAA+AAAER RLER L ATR EA+++D+DVAQVLDAL++SEKERRRLE EL RQTK
Sbjct: 1 MEEDRPWVPSSDNAGSGAGRASPLNDSFKDDIQAIGRAVERLRDGFA--GTDSSSPAPAPGHDSAQWDGGLSSSMLASGPG---DESGRPS-----------SGDGVGGQPTLGNNSRPLV--------RELLPARAGVSGIFAEGDT----SVLERTRYSDGRLSLRELRSADKSRTHYSDERARPRPD--DAGDQSTTAVAAAAEGGGEMAGTGTQVSDQE-GLFNKGGSSGSTHSGSTSRRRAN--------DVGGPSSPGGAQREQSLVTPVLTPDVGEKDDGRGPGARGETQAVGLLRLRGDREPSLPTAVS-RTAS----AEPLLLLSPLIRSSTSASVLGSGDGAWESFRREHSASGDNSSSSGDAGTAVAGTED--------GMPAAXXXXXXAESGPLFELRDALRSREEDLLRLKRDVSVVATSARGFRHLSASLGSG---NVERSSSFSFQRSRGHGK-------DASGANTDDSDL------PSGNGSAFRGGGSDGSRAGGAGVDKINEEAFRPHHGGAVGGVLLRRQPADSALPGTALSFRTAATPGRPSDNELASSRRLX------XXXXXQQGSTATVSKG-NAIIAASGSPLVASAHEGLQRMRAVLEQRALEVGRAHDDSKEMAN--------SLNDVSARLRRSERKRNAQAAELAKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKSKDATAARXXXXXXXXXXGSLAETAQRXXXXX--XXXXRLRDRLETATGEXXXXXXXXXXXXXXXXASDKETRRARERAAAAEEEAGAA-----TAXXXXXXXXXXXXXXXX-------------------AERAQREAEASAELXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAXAEAEAGRLHSVRRERDSS-------VAEVANLTAALVLAREGQEAERGRFDRESKRAAALGEELVASEARRKVQEEEISLVRKQVSRLDAKIEGDMSRVKANSDATARATAAGAEREANSLRASXXXXXXXXXXXXXXXXXXXXNAD--ASLKAELAAARE----AEAELA-------ASEARA---KXXXXRAARAAQLDKDTXXXXXXXXXXXXXXXXXXXXXXLSELEHAATSAATAXXXXXXXXXXXXXXXXXXXX---------XXXXXXXXXXXSAFVRARKDLEGRLALAVAEAAESRAEAQRLKRKLQAVSDREDGGTPAGLGVGFSARTKRRNGGGGTRGKDDDYLFGLDGDRPHREGLQEALRESCGVMERIASALSAAAADRRTSRRPGSDGGSE---LDDPRWAFGRRXXXXXXXXXXXXXXXXXXXXXXXXXXXX---------RAFSVDSNRSGVGDADLRQ-------DGFGDCAESGGEGHDLRRVVSRAEVREVAERLRFEAARLLGVRKEERKAAGDTVASLRRDLRDSESREAEVTARLEESRELSREQTGFVEGVWKERHRLXXXXXXXXXXXERLRASEDAARTAATVLDGKVADLSAALRQEQARAKREAEAAVAAEARDAMEALRQQLDDLRKEGEFQRLRAKYEKAKGRIVALEELVAASRRVSAQARREFKGALEALKLSQELLLRIHRQRQ--NNAVADPTDTATPTTHPAAAPAPKHHHQPDAATRESHPGAPDETPSAAPADL-------------------------------AATAGERPTSAATSSLSTDAHVHELAAQASKLRGMSGNVKRLLQLAAGEVQGALEDTRDSLGVAGAAAAT--VGTQTAEGLDGPTRGEVECLEQQVVRMKAEGQAREAEKLRLSGELSAAVGELTKIQGLLEDKMSEAVVLEAHVARLETERNEAREAASAAANDGLAEAEAS---LSDTQARLEAALATQRELRSRCAELSLASGAFASEVAKQKEERARSQERARLATAELRDLSAKFSRASKTAAADAAAERDRLERELVATRAEARDIDTDVAQVLDALASSEKERRRLEAELHRQTK 1806 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1015.1.12 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig1015.1.12 >prot_P-littoralis_Contig1015.1.12 ID=prot_P-littoralis_Contig1015.1.12|Name=mRNA_P-littoralis_Contig1015.1.12|organism=Pylaiella littoralis U1_48|type=polypeptide|length=2538bp MEEGGPCVPTDGVNRSTDRPNLHTDSFRDDIQAIGRAVERLRDGFASAGTback to top mRNA from alignment at P-littoralis_Contig1015:4433..18600- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig1015.1.12 ID=mRNA_P-littoralis_Contig1015.1.12|Name=mRNA_P-littoralis_Contig1015.1.12|organism=Pylaiella littoralis U1_48|type=mRNA|length=14168bp|location=Sequence derived from alignment at P-littoralis_Contig1015:4433..18600- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig1015:4433..18600- >mRNA_P-littoralis_Contig1015.1.12 ID=mRNA_P-littoralis_Contig1015.1.12|Name=mRNA_P-littoralis_Contig1015.1.12|organism=Pylaiella littoralis U1_48|type=CDS|length=7614bp|location=Sequence derived from alignment at P-littoralis_Contig1015:4433..18600- (Pylaiella littoralis U1_48)back to top |