mRNA_P-littoralis_Contig1013.7.1 (mRNA) Pylaiella littoralis U1_48
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_P-littoralis_Contig1013.7.1 vs. uniprot
Match: A0A6H5KW66_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW66_9PHAE) HSP 1 Score: 265 bits (678), Expect = 8.750e-80 Identity = 150/319 (47.02%), Postives = 182/319 (57.05%), Query Frame = 1 Query: 1 MEELVSTPMEPGQNPDDYFNQKHLLRHRAEKMGETISDRWFKDICVTGFTDDYKDVKMLMYRDPTFDIDQMQSTMRHMFIDEQSRNGRKGWVAGRGIAMTIATSPDIICHICKERGHKKWRCPQLKDAEKDAKESKGKSGGGSRKWCSVHRTGTHNDDECYEQGGKRP------GQALSACTQCAQCSGTKKDNSTQGEEQNASEDREEFDAR--------FMFTATRDARTFVPDAEGVT------------------------------------------LLIDSGATETFLDDQLIPGLKDRMKEYKDLKTPKII 789 MEEL++TPMEP QNPDDYFNQKHLLRH+AEKMGETISD +F D CVTGFT++YKDVKM+MYRDP F++D+MQ+TMRHMF+DEQSRNG KG +AGRG AMT TS + C C E+GH C +EK K K G+ KWCSVH T H+D+EC+EQG RP G+ALSAC C C T +Q AS + E D FM+ P A G T LLID+GA+E LDD LIPGLK+ M+E+K+L PK++ Sbjct: 116 MEELINTPMEPRQNPDDYFNQKHLLRHKAEKMGETISDCYFNDECVTGFTNEYKDVKMIMYRDPDFNVDKMQTTMRHMFLDEQSRNGPKGSIAGRGFAMTATTSEEPTCFDCGEKGHIWRNC-----SEKRGKGKKKTKPAGAAKWCSVHFTTRHSDEECFEQGATRPKKSSNTGKALSACASCTHCFSTSNKTELAMTKQEASSTQAEIDFSAEGESEEGFMYAIVHKGEDLKPMATGATPLGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLIDTGASENMLDDCLIPGLKEIMREHKELAKPKVV 429
BLAST of mRNA_P-littoralis_Contig1013.7.1 vs. uniprot
Match: D7G6Q1_ECTSI (CCHC-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6Q1_ECTSI) HSP 1 Score: 243 bits (621), Expect = 5.780e-77 Identity = 132/266 (49.62%), Postives = 168/266 (63.16%), Query Frame = 1 Query: 1 MEELVSTPMEPGQNPDDYFNQKHLLRHRAEKMGETISDRWFKDICVTGFTDDYKDVKMLMYRDPTFDIDQMQSTMRHMFIDEQSRNGRKGWVAGRGIAMTIATSPDIICHICKERGHKKWRCPQLKDAEKDAKESKGKSGGGSRKWCSVHRTGTHNDDECYEQGGKRP-------GQALSACTQCAQCSGT--KKDNSTQGEEQN------ASEDREEFDARFMFTATRDARTFVPDAEGVTLLIDSGATETFLDDQLIPGLKDRM 753 ME+L +T MEPGQNPDDYFN KHLLRH+ EKMGE ISDR+FKD+CVTGFT +YK+VKM+M+RDP F+++ MQ+TM HM +DEQSR G KG +AGRG M S C C E+GH + C Q + + K G+ KWC H T ++D+ECY QG KRP +A SAC CA S T +K+ +T E + +S D +E D FM+ TR +AEGVTLL++ GATET DD+LIP LKD + Sbjct: 1 MEKLDNTSMEPGQNPDDYFNHKHLLRHKVEKMGEKISDRYFKDMCVTGFTHEYKNVKMIMHRDPNFNVNHMQTTMHHMALDEQSRKGSKGGIAGRGFPMVTTASEQETCFGCGEKGHIRRNCLQRRGKGRQRKTKPA----GATKWCCFHFTTKNSDEECYGQGAKRPITDQISTDKAFSACAHCAHFSSTSDRKELTTAKEASSTKAAIDSSTDGDESDEGFMYATTRTGMEVEANAEGVTLLVEIGATETMRDDRLIPHLKDNV 262
BLAST of mRNA_P-littoralis_Contig1013.7.1 vs. uniprot
Match: A0A6H5L580_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L580_9PHAE) HSP 1 Score: 252 bits (644), Expect = 1.020e-75 Identity = 135/274 (49.27%), Postives = 183/274 (66.79%), Query Frame = 1 Query: 1 MEELVSTPMEPGQNPDDYFNQKHLLRHRAEKMGETISDRWFKDICVTGFTDDYKDVKMLMYRDPTFDIDQMQSTMRHMFIDEQSRNGRKGWVAGRGIAMTIATSPDIICHICKERGHKKWRCPQLKD-AEKDAKESKGKSGGGSRKWCSVHRTGTHNDDECYEQGGKRP------GQALSACTQCAQCSGTKKDNSTQGEEQ--NASEDREEFDARFMF-TATR-DARTFVPDAEGVTLLIDSGATETFLDDQLIPGLKDRMKEYKDLKTPKII 789 MEEL + PM PG+NPDDYFNQKHLLR + +KMGE ISDR FKDICV GF+D+YKDVK++++RDPTF++ M STMR++F+DEQSR G KG +AGRG AM T+ DIICH C E GH + CP++K+ A+K K + G+ KWCS H T +H+D+ECY+QGGKRP + +AC+ C CS K + + E + + D + FD+ FMF T +R R F + GV L++DS A+ET D++LIP + +Y +PKI+ Sbjct: 156 MEELENNPMNPGENPDDYFNQKHLLRTQLDKMGEPISDRRFKDICVQGFSDEYKDVKLMVFRDPTFNVLDMLSTMRNIFLDEQSRKGWKGRIAGRGFAMAT-TASDIICHSCYEPGHIRRNCPKIKNRAKKKTKPA------GATKWCSKHNTTSHSDEECYQQGGKRPEDTKDSNKVFTACSNCTHCSSASKKDDSNNEVAVVDFTRDEDAFDSGFMFATCSRISGRNFAASSTGVRLVVDSEASETMFDNRLIPD--GNLHDYTQRNSPKIV 420
BLAST of mRNA_P-littoralis_Contig1013.7.1 vs. uniprot
Match: A0A6H5KJB9_9PHAE (Uncharacterized protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJB9_9PHAE) HSP 1 Score: 248 bits (633), Expect = 8.660e-74 Identity = 139/283 (49.12%), Postives = 179/283 (63.25%), Query Frame = 1 Query: 1 MEELVSTPMEPGQNPDDYFNQKHLLRHRAEKMGETISDRWFKDICVTGFTDDYKDVKMLMYRDPTFDIDQMQSTMRHMFIDEQSRNGRKGWVAGRGIAMTIATSPDIICHICKERGHKKWRCPQLKDAEKDAKESKGKSGGGSRKWCSVHRTGTHNDDECYEQGGKRP---GQALSACTQCAQCSGTKKDN--------------STQGEEQNASEDREEFDARFMFTAT---RDARTFVPDAEGVTLLIDSGATETFLDDQLIPGLKDRMKEYKDLKTPKII 789 +++L T MEPG+NPDD+FN+KH LR + EKMGETISDR FKDICV GF++DYKD+KM+++RDP+FD+ QMQ+TMR++F+DEQ R KG +AGRG AM TS I C C E GH + CP + AK++K G+ KWCSVH T TH+D+ECY QG KRP G+A SACT C CS +D T+ E + S D + F FM+ AT RTF A G + L+DSGA+ET DD+LIP R++E + TPKII Sbjct: 136 LDDLERTVMEPGENPDDFFNKKHRLRSQLEKMGETISDRRFKDICVQGFSEDYKDIKMMVFRDPSFDVQQMQATMRNIFLDEQMRKRTKGQIAGRGFAMATKTSGPI-CFECNEPGHVRRNCPNRQREGHRAKKTKP---AGATKWCSVHNTTTHSDEECYNQGAKRPERTGKAFSACTHCVHCSTQSRDTHAKPTTTETPTETEKTEKAEIDFSYDEDAFKGGFMYHATCSKGSGRTFTTTATGTSALVDSGASETMFDDRLIPN--GRLEEERP--TPKII 410
BLAST of mRNA_P-littoralis_Contig1013.7.1 vs. uniprot
Match: A0A6H5K3T5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3T5_9PHAE) HSP 1 Score: 248 bits (633), Expect = 5.020e-72 Identity = 139/283 (49.12%), Postives = 179/283 (63.25%), Query Frame = 1 Query: 1 MEELVSTPMEPGQNPDDYFNQKHLLRHRAEKMGETISDRWFKDICVTGFTDDYKDVKMLMYRDPTFDIDQMQSTMRHMFIDEQSRNGRKGWVAGRGIAMTIATSPDIICHICKERGHKKWRCPQLKDAEKDAKESKGKSGGGSRKWCSVHRTGTHNDDECYEQGGKRP---GQALSACTQCAQCSGTKKD--------------NSTQGEEQNASEDREEFDARFMFTAT---RDARTFVPDAEGVTLLIDSGATETFLDDQLIPGLKDRMKEYKDLKTPKII 789 +++L T MEPG+NPDD+FN+KH LR + EKMGETISDR FKDICV GF++DYKD+KM+++RDP+FD+ QMQ+TMR++F+DEQ R KG +AGRG AM TS I C C E GH + CP + AK++K G+ KWCSVH T TH+D+ECY QG KRP G+A SACT C CS +D T+ E + S D + F FM+ AT RTF A G + L+DSGA+ET DD+LIP R++E + TPKII Sbjct: 136 LDDLERTVMEPGENPDDFFNKKHRLRSQLEKMGETISDRRFKDICVQGFSEDYKDIKMMVFRDPSFDVQQMQATMRNIFLDEQMRKRTKGQIAGRGFAMATKTSGPI-CFECNEPGHVRRNCPNRQREGHRAKKTKP---AGATKWCSVHNTTTHSDEECYNQGAKRPERTGKAFSACTHCVHCSTQSRDIQAKPTTTEIPKETEKTEQAEIDFSYDEDAFKGGFMYHATCSKGSGRTFTTTATGTSALVDSGASETMFDDRLIPN--GRLEEERP--TPKII 410
BLAST of mRNA_P-littoralis_Contig1013.7.1 vs. uniprot
Match: A0A6H5JZ53_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ53_9PHAE) HSP 1 Score: 238 bits (607), Expect = 7.330e-72 Identity = 130/276 (47.10%), Postives = 183/276 (66.30%), Query Frame = 1 Query: 1 MEELVSTPMEPGQNPDDYFNQKHLLRHRAEKMGETISDRWFKDICVTGFTDDYKDVKMLMYRDPTFDIDQMQSTMRHMFIDEQSRNGRKGWVAGRGIAMTIATSPDIICHICKERGHKKWRCPQLKD-AEKDAKESKGKSGGGSRKWCSVHRTGTHNDDECYEQ--GGKRP------GQALSACTQCAQCSGT--KKDNSTQGEEQNASEDREEFDARFMF-TATR-DARTFVPDAEGVTLLIDSGATETFLDDQLIPGLKDRMKEYKDLKTPKII 789 MEEL + PM PG+NPDDYFNQKH L + +KMGE ISDR FKDICV GF+D+Y+DVK++++RDPTF++ MQSTMR++++DEQSR G KG +AGRG AM T+ DIICH C E GH + CP++K+ A+K K + G+ KWCS H T +H+D+ECY+Q GGK P +A + C+ C CS T K D++ + + + D + FD+ FMF T +R R F + GV LL+D+GA+ T D++L+P + +Y +PK++ Sbjct: 1 MEELENNPMNPGENPDDYFNQKHPLCVQLDKMGEPISDRRFKDICVQGFSDEYEDVKLMLFRDPTFNVLDMQSTMRNIYLDEQSRKGWKGRIAGRGFAMAT-TASDIICHSCYEPGHIRRNCPKIKNRAKKKTKPA------GATKWCSKHNTTSHSDEECYQQXQGGKCPEDTKDSSKAFTPCSDCTHCSSTCNKHDSNNEVTVVDFTRDEDAFDSGFMFATCSRISGRNFAASSTGVGLLVDTGASATMFDNRLMPD--GNLHDYTQRNSPKVV 267
BLAST of mRNA_P-littoralis_Contig1013.7.1 vs. uniprot
Match: A0A6H5JUN9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUN9_9PHAE) HSP 1 Score: 246 bits (628), Expect = 1.910e-71 Identity = 138/283 (48.76%), Postives = 179/283 (63.25%), Query Frame = 1 Query: 1 MEELVSTPMEPGQNPDDYFNQKHLLRHRAEKMGETISDRWFKDICVTGFTDDYKDVKMLMYRDPTFDIDQMQSTMRHMFIDEQSRNGRKGWVAGRGIAMTIATSPDIICHICKERGHKKWRCPQLKDAEKDAKESKGKSGGGSRKWCSVHRTGTHNDDECYEQGGKRP---GQALSACTQCAQCSGTKKD--------------NSTQGEEQNASEDREEFDARFMFTAT---RDARTFVPDAEGVTLLIDSGATETFLDDQLIPGLKDRMKEYKDLKTPKII 789 +++L T MEPG+NPDD+FN+KH LR + EKMGETISDR FKDICV GF++DYKD+KM+++RDP+FD+ QMQ+TMR++F+DEQ R KG +AGRG AM TS I C C E GH + CP + AK++K G+ KWCSVH T TH+D+ECY QG KRP G+A SACT C CS +D T+ E + S D + F FM+ AT RTF A G + L+DSGA+ET D++LIP R++E + TPKII Sbjct: 155 LDDLERTVMEPGENPDDFFNKKHRLRSQLEKMGETISDRRFKDICVQGFSEDYKDIKMMVFRDPSFDVQQMQATMRNIFLDEQMRKRTKGQIAGRGFAMATKTSGPI-CFECNEPGHVRRNCPNRQREGHRAKKTKP---AGATKWCSVHNTTTHSDEECYNQGAKRPERTGKAFSACTHCVHCSTQSRDIHAKPTTTEIPKETEKTEKAEIDFSYDEDAFKGGFMYHATCSKGSGRTFTTTATGTSALVDSGASETMFDNRLIPN--GRLEEERP--TPKII 429
BLAST of mRNA_P-littoralis_Contig1013.7.1 vs. uniprot
Match: A0A6H5L1Z9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1Z9_9PHAE) HSP 1 Score: 246 bits (628), Expect = 2.600e-71 Identity = 138/283 (48.76%), Postives = 179/283 (63.25%), Query Frame = 1 Query: 1 MEELVSTPMEPGQNPDDYFNQKHLLRHRAEKMGETISDRWFKDICVTGFTDDYKDVKMLMYRDPTFDIDQMQSTMRHMFIDEQSRNGRKGWVAGRGIAMTIATSPDIICHICKERGHKKWRCPQLKDAEKDAKESKGKSGGGSRKWCSVHRTGTHNDDECYEQGGKRP---GQALSACTQCAQCSGTKKD--------------NSTQGEEQNASEDREEFDARFMFTAT---RDARTFVPDAEGVTLLIDSGATETFLDDQLIPGLKDRMKEYKDLKTPKII 789 +++L T MEPG+NPDD+FN+KH LR + EKMGETISDR FKDICV GF++DYKD+KM+++RDP+FD+ QMQ+TMR++F+DEQ R KG +AGRG AM TS I C C E GH + CP + AK++K G+ KWCSVH T TH+D+ECY QG KRP G+A SACT C CS +D T+ E + S D + F FM+ AT RTF A G + L+DSGA+ET D++LIP R++E + TPKII Sbjct: 136 LDDLERTVMEPGENPDDFFNKKHRLRSQLEKMGETISDRRFKDICVQGFSEDYKDIKMMVFRDPSFDVQQMQATMRNIFLDEQMRKRTKGQIAGRGFAMATKTSGPI-CFECNEPGHVRRNCPNRQREGHRAKKTKP---AGATKWCSVHNTTTHSDEECYNQGAKRPERTGKAFSACTHCVHCSTQSRDIQAKPTTTEIPKETEKTEQAEIDFSYDEDAFKGGFMYHATCSKGSGRTFTTTATGTSALVDSGASETMFDNRLIPN--GRLEEERP--TPKII 410
BLAST of mRNA_P-littoralis_Contig1013.7.1 vs. uniprot
Match: A0A6H5KXR7_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXR7_9PHAE) HSP 1 Score: 232 bits (591), Expect = 4.400e-71 Identity = 131/275 (47.64%), Postives = 178/275 (64.73%), Query Frame = 1 Query: 1 MEELVSTPMEPGQNPDDYFNQKHLLRHRAEKMGETISDRWFKDICVTGFTDDYKDVKMLMYRDPTFDIDQMQSTMRHM-FIDEQSRNGRKGWVAGRGIAMTIATSPDIICHICKERGHKKWRCPQLKD-AEKDAKESKGKSGGGSRKWCSVHRTGTHNDDECYEQGGKRP------GQALSACTQCAQCSGTKKDNSTQGEEQNASEDREE--FDARFMF-TATR-DARTFVPDAEGVTLLIDSGATETFLDDQLIPGLKDRMKEYKDLKTPKII 789 MEEL + PM PG+NPDDYFNQKHL+R + +KMGE ISDR KDI V GF+D+Y+DVK++++RDPTF+ MQST+R+ + +EQSR G KG +AGRG AM T+ DIICH C E GH + CP++K+ A+K K + G+ KWC H T +H+D+ECY+QGGKRP +A +AC+ C CS N + E A R+E FD+ FMF T +R R F + G LL+D+GA+ET D++LIP + +Y +PKI+ Sbjct: 96 MEELENNPMNPGENPDDYFNQKHLIRAQLDKMGEPISDRRCKDIWVQGFSDEYRDVKLMVFRDPTFNALGMQSTIRNTSWTNEQSRKGWKGRIAGRGFAMAT-TASDIICHSCYEPGHIRRNCPKIKNRAKKKTKPA------GATKWCCKHNTTSHSDEECYQQGGKRPEDTKDSSKAFTACSDCTHCSSAPNKNDSNNEVAVADFTRDEDAFDSGFMFGTCSRISERNFAASSTGSILLVDTGASETMFDNRLIPD--GNLHDYTQRNSPKIV 361
BLAST of mRNA_P-littoralis_Contig1013.7.1 vs. uniprot
Match: A0A6H5JTQ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTQ0_9PHAE) HSP 1 Score: 246 bits (628), Expect = 7.590e-71 Identity = 138/283 (48.76%), Postives = 179/283 (63.25%), Query Frame = 1 Query: 1 MEELVSTPMEPGQNPDDYFNQKHLLRHRAEKMGETISDRWFKDICVTGFTDDYKDVKMLMYRDPTFDIDQMQSTMRHMFIDEQSRNGRKGWVAGRGIAMTIATSPDIICHICKERGHKKWRCPQLKDAEKDAKESKGKSGGGSRKWCSVHRTGTHNDDECYEQGGKRP---GQALSACTQCAQCSGTKKDN--------------STQGEEQNASEDREEFDARFMFTAT---RDARTFVPDAEGVTLLIDSGATETFLDDQLIPGLKDRMKEYKDLKTPKII 789 +++L T MEPG+NPDD+FN+KH LR + EKMGETISDR FKDICV GF++DYKD+KM+++RDP+FD+ QMQ+TMR++F+DEQ R KG +AGRG AM TS I C C E GH + CP + AK++K G+ KWCSVH T TH+D+ECY QG KRP G+A SACT C CS +D T+ E + S D + F FM+ AT RTF A G + L+DSGA+ET D++LIP R++E + TPKII Sbjct: 136 LDDLERTVMEPGENPDDFFNKKHRLRSQLEKMGETISDRRFKDICVQGFSEDYKDIKMMVFRDPSFDVQQMQATMRNIFLDEQMRKRTKGQIAGRGFAMATKTSGPI-CFECNEPGHVRRNCPNRQREGHRAKKTKP---AGATKWCSVHNTTTHSDEECYNQGAKRPERTGKAFSACTHCVHCSTQSRDTHAKPTTTEIPKETEKTEKAEIDFSYDEDAFKGGFMYHATCSKGSGRTFTTTATGTSALVDSGASETMFDNRLIPN--GRLEEERP--TPKII 410 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1013.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig1013.7.1 >prot_P-littoralis_Contig1013.7.1 ID=prot_P-littoralis_Contig1013.7.1|Name=mRNA_P-littoralis_Contig1013.7.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=265bp MEELVSTPMEPGQNPDDYFNQKHLLRHRAEKMGETISDRWFKDICVTGFTback to top mRNA from alignment at P-littoralis_Contig1013:30368..31162+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig1013.7.1 ID=mRNA_P-littoralis_Contig1013.7.1|Name=mRNA_P-littoralis_Contig1013.7.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=795bp|location=Sequence derived from alignment at P-littoralis_Contig1013:30368..31162+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig1013:30368..31162+ >mRNA_P-littoralis_Contig1013.7.1 ID=mRNA_P-littoralis_Contig1013.7.1|Name=mRNA_P-littoralis_Contig1013.7.1|organism=Pylaiella littoralis U1_48|type=CDS|length=795bp|location=Sequence derived from alignment at P-littoralis_Contig1013:30368..31162+ (Pylaiella littoralis U1_48)back to top |