mRNA_P-littoralis_Contig1012.6.3 (mRNA) Pylaiella littoralis U1_48
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_P-littoralis_Contig1012.6.3 vs. uniprot
Match: A0A6H5KQZ5_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQZ5_9PHAE) HSP 1 Score: 364 bits (934), Expect = 1.400e-117 Identity = 189/369 (51.22%), Postives = 242/369 (65.58%), Query Frame = 3 Query: 84 GMKGWCICCPSGFCFVQYIDGGFLGDLQLRGFKDCPLGNTARTALHVVLDARKTFSDKIVDSGVTIAMDNYFASAALLLSLATRDIFTVGTLRSNRVGLDGAMKLWKDKDMKATKRGEMVMARSPSEIAVITWVDSQVVNLLWSKQIFASD*EPIVYKRRVSGKNGEVMTSEQPIARADYVRNMGGVDVADQRLSSHDHVHKPMTFFWRRVFDQKLQQAISNAYLFFLMWAEVLLAQCKVML------------AERAEGSDAAES-DLTVEELEEFISGLVKMMRTDRKTWDTRLACLLMVKCSVGHENKGARRTRKVVPVYDSKGARSVKVCRGGLCSKHSDPTAHCNSKRARGVCLVRYLQQ*LGE 1151 G+K W ICCPSG+CFVQ IDGGF GD++LR + CPLG +ART ++V+L+A +TFS+KI+ G+T+AMDN+F A LL LATRDIF VGTLR NR+G++ A LW + M AT+RG+M+ ARS E+ ++ W+DSQ V L+ +K +FA + EP+ Y++R + NGE ++S QP+AR +YV+NMGGVDVADQRL SH H H+PMTFFWRRVFDQK QA+SN +L F WA VL+ QC L E EG AA+S DLTV EL EF + L K M+ +R WD RLA LM C+VGH GARR K Y GA S +VC G C + P + R RG C LG+ Sbjct: 90 GIKCWAICCPSGYCFVQSIDGGFSGDIKLRPYASCPLGRSARTVMYVLLEACETFSNKIIGKGITVAMDNFFTGAPLLRCLATRDIFAVGTLRGNRIGVELANYLWAKEGMAATERGQMLTARS-DELVIVKWIDSQEVYLMSTKHVFADEWEPLAYEKRAANNNGEKVSSRQPLARKEYVKNMGGVDVADQRLGSHAHKHRPMTFFWRRVFDQKFAQAVSNGWLLFYEWAGVLVTQCTAALEAATQDGGMGDAGEAEEGGVAADSCDLTVAELREFQTLLKKAMKMERVDWDRRLANHLMSLCNVGHTENGARRATKPSESYLVNGACSSRVCHGRGCK--TPPGSPYAGTRTRGACWCDICTNGLGK 455
BLAST of mRNA_P-littoralis_Contig1012.6.3 vs. uniprot
Match: A0A6H5KGW0_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGW0_9PHAE) HSP 1 Score: 295 bits (755), Expect = 2.040e-93 Identity = 150/294 (51.02%), Postives = 197/294 (67.01%), Query Frame = 3 Query: 42 RW*KARRERTFSS*GMKGWCICCPSGFCFVQYIDGGFLGDLQLRGFKDCPLGNTARTALHVVLDARKTFSDKIVDSGVTIAMDNYFASAALLLSLATRDIFTVGTLRSNRVGLDGAMKLWKDKDMKATKRGEMVMARSPSEIAVITWVDSQVVNLLWSKQIFASD*EPIVYKRRVSGKNGEVMTSEQPIARADYVRNMGGVDVADQRLSSHDHVHKPMTFFWRRVFDQKLQQAISNAYLFFLMWAEVLLAQCKVMLAERAE----------------GSDAAESDLTVEELEEF 875 R+ KA+ +T G+KGW ICCPSG+CFVQ IDGGF D+++R C LG +ART L+V+L+A TFSDKIV SG+T+AMDN+F A++L LATRDIF VGT R NR G+D LW + +KAT+RG+M+ ARS E+ ++ W+DSQ V L+ +K +F + P+ Y+RR + NG+ + S QP+AR +YV+N+GGVDVADQRLS+H H H+PMTFFW RV DQK QA+SNA+L F WA VL QC L + G+ A DLTV EL+EF Sbjct: 2 RFNKAKPIKT----GIKGWAICCPSGYCFVQSIDGGF-SDIKVRPHATCRLGRSARTVLYVLLEACPTFSDKIVGSGITVAMDNFFTGASVLRCLATRDIFAVGTRRGNRTGVDLVKHLWDKEGLKATERGDMLTARS-DELVIVKWIDSQEVYLMSTKHVFEDEWAPLAYERRAANNNGDKVPSHQPLARKEYVKNIGGVDVADQRLSAHAHTHRPMTFFWGRVLDQKFAQAVSNAWLLFFEWAGVLATQCTAALEAATQDGGVGDXXXXXXXXXXGAVAGSCDLTVAELQEF 289
BLAST of mRNA_P-littoralis_Contig1012.6.3 vs. uniprot
Match: A0A6H5KG44_9PHAE (DDE_Tnp_1_7 domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG44_9PHAE) HSP 1 Score: 268 bits (684), Expect = 2.260e-83 Identity = 123/207 (59.42%), Postives = 161/207 (77.78%), Query Frame = 3 Query: 84 GMKGWCICCPSGFCFVQYIDGGFLGDLQLRGFKDCPLGNTARTALHVVLDARKTFSDKIVDSGVTIAMDNYFASAALLLSLATRDIFTVGTLRSNRVGLDGAMKLWKDKDMKATKRGEMVMARSPSEIAVITWVDSQVVNLLWSKQIFASD*EPIVYKRRVSGKNGEVMTSEQPIARADYVRNMGGVDVADQRLSSHDHVHKPMTFF 704 G+KGW ICCPSG+CFVQ IDGGF GD++LR CPLG +ART L+V+L+A TFSDKIV SG+T+AMDN+F A+L+ LATRDIF VGTLR NR G+D A LW + +KAT+RG+M+ ARS E+ ++ W+DSQ V L+ +K +F + P+ Y+RR + NGE ++S+QP+AR +YV+NMGGVDVADQRLS+H H H+PMTFF Sbjct: 52 GIKGWAICCPSGYCFVQSIDGGFSGDIKLRPHATCPLGRSARTVLYVLLEACPTFSDKIVGSGITVAMDNFFTGASLVRCLATRDIFAVGTLRGNRTGVDLAKHLWDKEGLKATERGDMLTARS-DELVIVKWIDSQEVYLMSTKHVFEDEWAPLAYERRAANNNGEKVSSQQPLARKEYVKNMGGVDVADQRLSAHAHTHRPMTFF 257
BLAST of mRNA_P-littoralis_Contig1012.6.3 vs. uniprot
Match: A0A6H5JDZ7_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDZ7_9PHAE) HSP 1 Score: 253 bits (646), Expect = 1.730e-73 Identity = 123/232 (53.02%), Postives = 167/232 (71.98%), Query Frame = 3 Query: 150 FLGDLQLRGFKDCPLGNTARTALHVVLDARKTFSDKIVDSGVTIAMDNYFASAALLLSLATRDIFTVGTLRSNRVGLDGAMKLWKDKDMKATKRGEMVMARSPSEIAVITWVDSQVVNLLWSKQIFASD*EPIVYKR-RVSGKNGEVMTSEQPIARADYVRNMGGVDVADQRLSSHDHVHKPMTFFWRRVFDQKLQQAISNAYLFFLMWAEVLLAQCKVMLAERAEGSDAAE 842 F GD+++R + CP+G +ART ++V+L+A +TFSDKI+ SGVT+AMDN+F AALL LATRDI+ VGTLR NR G+D A +W + KAT+R +M+ ARS E+ ++ W+ SQ V+L+ +K +FA++ EP+ +R R + NGE ++S QP+AR YV+NMGGVDVADQRL +H H H+PMTFFWRRVFDQKL A+SNA+L F WA VL QC L + A + Sbjct: 139 FSGDIKVRPYASCPIGKSARTVMYVLLEACETFSDKIIGSGVTVAMDNFFTGAALLQCLATRDIYAVGTLRGNRTGVDLANYIWSREGTKATEREQMLKARS-DELVIVKWIGSQEVHLMSAKHVFAAEWEPLTLERKRAADNNGEKVSSSQPLARKKYVKNMGGVDVADQRLGAHAHTHRPMTFFWRRVFDQKLSHAVSNAWLLFYEWAWVLATQCTAALEAATQHGGAGD 369
BLAST of mRNA_P-littoralis_Contig1012.6.3 vs. uniprot
Match: A0A6H5JC56_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC56_9PHAE) HSP 1 Score: 231 bits (588), Expect = 1.140e-67 Identity = 114/227 (50.22%), Postives = 147/227 (64.76%), Query Frame = 3 Query: 84 GMKGWCICCPSGFCFVQYIDGGFLGDLQLRGFKDCPLGNTARTALHVVLDARKTFSDKIVDSGVTIAMDNYFASAALLLSLATRDIFTVGTLRSNRVGLDGAMKLWKDKDMKATKRGEMVMARSPSEIAVITWVDSQVVNLLWSKQIFASD*EPIVYKRRVSGKNGEVMTSEQPIARADYVRNMGGVDVADQRLSSHDHVHKPMTFFWRRVFDQKLQQAISNAYLFF 764 G+K W CCPSG+CFVQ IDGGF GD++LR CP+G +ART ++V+L+A +TFSDKI+ SGVT+AMDN+F AALL LATRDIF V T R NR G+D + +W + MK T+RG+M+ S +R + NGE ++S QP+AR ++V+NMGGVDVADQ L +H H H+PMTFFWRRVFDQK QA+SNA+ F Sbjct: 164 GIKCWAGCCPSGYCFVQSIDGGFSGDIKLRPHASCPIGKSARTVVYVLLEACETFSDKIIGSGVTVAMDNFFTGAALLRYLATRDIFAVRTPRGNRTGVDLSNYIWSKEGMKVTERGQMLRPARTSS-------------------------------KRAADHNGEKVSSSQPLARKEHVKNMGGVDVADQWLGAHAHTHRPMTFFWRRVFDQKFSQAVSNAWFLF 359
BLAST of mRNA_P-littoralis_Contig1012.6.3 vs. uniprot
Match: A0A6H5KMF5_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMF5_9PHAE) HSP 1 Score: 208 bits (529), Expect = 3.060e-57 Identity = 132/367 (35.97%), Postives = 192/367 (52.32%), Query Frame = 3 Query: 84 GMKGWCICCPSGFCFVQYIDGGFLGDLQLRGFKDCPLGNTARTALHVVLDARKTFSDKIVDSGVTIAMDNYFASAALLLSLATRDIFTVGTLRSNRVGLDGAMKLWKDKDMKATKRGEMVMARSPSEIAVITWVDSQVVNLLWSKQIFASD*E--------PIVYKRRVSGKNGEVMTSEQPIARADYVRNMGGVDVADQRLSSHDHVHKPMTFFWRRVFDQKLQQAISNAYLFFLMWAEVLLAQCKVMLAERAEGSDAAESDLT-VEELEEFISGLVKMMRTDRKTWDTRLACLLMVKCSVGHENKGA---RRTRKVVP---VYDSKGARSVKVCRGGLCSKHSDPTAHCNS----KRARGVCLVR 1127 GMK + +C +G+C + IDG F GD LR +DCPLG T R LHV+L+ +T K+V SGV IAMDNYF S L LA+ +IF VGT RS R GA+ + + G+M RS E+A + W DS+ + L + I + E P+ + G G+ +QP+ R DYV+ MGGVD ADQ+ SH H H+ T WRRVFD K+ Q ++N +L F MW +L+++ V++ DA + V+EL + L ++ + +R WD L+ +LM +C+VG KG R + + P V+ S +S +VC CSK + C + RGV + + Sbjct: 135 GMKLYAVCDRNGYCLINSIDGSFKGDPSLRSLEDCPLGKTTRHVLHVLLEECETLRGKLVGSGVFIAMDNYFTSPTLFACLASHEIFAVGTCRSPRTC--GALPYIQSLERTTPNPGDMTFCRS-GEMAFVQWRDSKEILLCSTVHIGETGEEGGDINHFKPVPLALKGKGWAGKHKEHDQPVMRMDYVKYMGGVDRADQQNESHYHDHRSYTNHWRRVFDAKIMQMLTNNFLLFRMWVRLLMSEVDVLM-------DAHNTPFEEVQELADVKKELERLSKRERVDWDEELSEILMRRCNVGTIRKGGKVPRSSERQQPRGKVWGSVEIKSHRVCMDPACSKRTLKGCTCEEFCTFEGQRGVLMCK 491
BLAST of mRNA_P-littoralis_Contig1012.6.3 vs. uniprot
Match: A0A6H5LEE0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LEE0_9PHAE) HSP 1 Score: 211 bits (538), Expect = 1.610e-56 Identity = 128/350 (36.57%), Postives = 178/350 (50.86%), Query Frame = 3 Query: 87 MKGWCICCPSGFCFVQYIDGGFLGDLQLRGFKDCPLGNTARTALHVVLDARKTFSDKIVDSGVTIAMDNYFASAALLLSLATRDIFTVGTLRSNRVGLDGAMKLWKDKDMKATKRGEMVMARSPSEIAVITWVDSQVVNLLWSKQIFA-----------SD*EPIVYKRRVSGKNGEVMTSEQPIARADYVRNMGGVDVADQRLSSHDHVHKPMTFFWRRVFDQKLQQAISNAYLFFLMWAEVLLAQCKVMLAERAEGSDAAESDLTVEELEEFISGLVKMMRTDRKTWDTRLACLLMVKCSVGHENKGARR----TRKVVPVYDSKGARSVKVCRGGLCSKHSDPTAHC 1091 MK C + +C +DGG GD +LR + DCPLG T R LHV+L KI SGV IAMDNYF S L LA+ DIF VGT R++R GA + RG+M RS ++A + W DS+ + L+ + + +P+ R G+NGE + +QP R DYV NM GVD+ADQ+ SH H HK T FWRRV+D KL+QA++NA+L F W E+L+ + + G +EELE + L + + +R WD ++A LLM +C+V NKG +R + PV+ S +S ++C C S C Sbjct: 428 MKLLAACDITSYCLTSSVDGGMKGDPKLRPYMDCPLGRTTRHVLHVLLGECGVLRQKIDGSGVFIAMDNYFTSPTLFECLASHDIFAVGTCRADRTA--GADAYLESLGRTIPNRGDMNFCRS-GQVACVQWADSKDIFLISTIHVAQPAKGKEEAGGIDHFKPLPLSLRAKGRNGEPLDLQQPYMRMDYVLNMLGVDLADQQNGSHTHDHKSYTNFWRRVYDAKLEQALTNAFLIFRKWVELLIREVEAKKPIAPGGE--------LEELELASTELATLSKVERAVWDEQMATLLMAECNVARPNKGGKRPASDNKPADPVWGSVTLKSGRLCLNPTCKTTSMKGCSC 766
BLAST of mRNA_P-littoralis_Contig1012.6.3 vs. uniprot
Match: A0A6H5JHH7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHH7_9PHAE) HSP 1 Score: 201 bits (510), Expect = 2.850e-54 Identity = 128/364 (35.16%), Postives = 157/364 (43.13%), Query Frame = 3 Query: 84 GMKGWCICCPSGFCFVQYIDGGFLGDLQLRGFKDCPLGNTARTALHVVLDARKTFSDKIVDSGVTIAMDNYFASAALLLSLATRDIFTVGTLRSNRVGLDGAMKLWKDKDMKATKRGEMVMARSPSEIAVITWVDSQVVNLLWSKQIFASD*EPIVYKRRVSGKNGEVMTSEQPIARADYVRNMGGVDVADQRLSSHDHVHKPMTFFWRRVFDQKLQQAISNAYLFFLMWAEVLLAQCKVMLAERAEGSD------------------AAES-DLTVEELEEFISGLVKMMRTDRKTWDTRLACLLMVKCSVGHENKGARRTRKVVPVYDSKGARSVKVCRGGLCSKHSDPTAHCNSKRARGVC 1118 G+K W ICCPSG+CFVQ IDGGF GD++L+ + CP+G +ART + D NGE ++S QP+AR +YV+NMGGVDVADQRL +H H+PMTFFWRRVF QK QA+SNA+L F WA VL QC V L + + AA+S DLTV EL EF S + K M+ +R WD RLA LM CSVGH GARRT K V +Y KGA+S VC GG C + + + R RGVC Sbjct: 253 GIKCWAICCPSGYCFVQSIDGGFSGDIKLKPYATCPVGKSARTVVKRAAD------------------------------------------------------------------------------------------------------------------NGEKVSSSQPLARKEYVKNMGGVDVADQRLGAHARTHRPMTFFWRRVFAQKFSQAVSNAWLLFYEWAGVLAKQCTVALDAATQDGEVGDXXXXXXXXXXXXXXAAADSCDLTVAELREFQSLVKKAMKVERVDWDRRLANHLMSLCSVGHTETGARRTAKPVEMYSVKGAKSSLVCYGGHCEETAKASRRYKGSRTRGVC 502
BLAST of mRNA_P-littoralis_Contig1012.6.3 vs. uniprot
Match: A0A6H5KPD8_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPD8_9PHAE) HSP 1 Score: 187 bits (475), Expect = 1.180e-51 Identity = 86/158 (54.43%), Postives = 120/158 (75.95%), Query Frame = 3 Query: 84 GMKGWCICCPSGFCFVQYIDGGFLGDLQLRGFKDCPLGNTARTALHVVLDARKTFSDKIVDSGVTIAMDNYFASAALLLSLATRDIFTVGTLRSNRVGLDGAMKLWKDKDMKATKRGEMVMARSPSEIAVITWVDSQVVNLLWSKQIFASD*EPIVYK 557 G+K W ICCPSG+ FVQ IDGGF GD++LR + CPLG +ART ++V+L+A +TFS+KI+ G+T+AMDN+F A LL LATRDIF VGTLR NR+G++ A+ LW + M AT+RG+M+ ARS E+ ++ W+DSQ V L+ +K +FA + EP+ Y+ Sbjct: 156 GIKCWAICCPSGYSFVQSIDGGFSGDIKLRPYASCPLGRSARTVMYVLLEACETFSNKIIGKGITVAMDNFFTGAPLLGCLATRDIFAVGTLRGNRIGVELAIYLWAKEGMAATERGQMLTARS-DELVIVKWIDSQEVYLMSTKHVFADEWEPLAYE 312
BLAST of mRNA_P-littoralis_Contig1012.6.3 vs. uniprot
Match: A0A6H5K5P5_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5P5_9PHAE) HSP 1 Score: 181 bits (459), Expect = 4.800e-47 Identity = 86/157 (54.78%), Postives = 118/157 (75.16%), Query Frame = 3 Query: 84 GMKGWCICCPSGFCFVQYIDGGFLGDLQLRGFKDCPLGNTARTALHVVLDARKTFSDKIVDSGVTIAMDNYFASAALLLSLATRDIFTVGTLRSNRVGLDGAMKLWKDKDMKATKRGEMVMARSPSEIAVITWVDSQVVNLLWSKQIFASD*EPIVY 554 G+K + C +G+C++Q IDGGF GD+ LR CPLG TART LHV+L+A + FS+KI +SGVT+AMDNYF SA LLLSLA+RDIF VGTLR R GLDGAM+LW++ + ++G+M+ ARS ++I +I WVDS+ V+L+ +K +F D P++Y Sbjct: 393 GIKRFACWCWTGYCYLQSIDGGFYGDMGLRPHDKCPLGRTARTVLHVLLEACEVFSNKINNSGVTVAMDNYFTSAGLLLSLASRDIFAVGTLRGKRSGLDGAMELWQNNEESTKEKGDMIFARS-NDIVIIEWVDSKTVHLMSTKHVFEEDWNPLLY 548 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1012.6.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig1012.6.3 >prot_P-littoralis_Contig1012.6.3 ID=prot_P-littoralis_Contig1012.6.3|Name=mRNA_P-littoralis_Contig1012.6.3|organism=Pylaiella littoralis U1_48|type=polypeptide|length=185bp MTSEQPIARADYVRNMGGVDVADQRLSSHDHVHKPMTFFWRRVFDQKLQQback to top mRNA from alignment at P-littoralis_Contig1012:28963..31726+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig1012.6.3 ID=mRNA_P-littoralis_Contig1012.6.3|Name=mRNA_P-littoralis_Contig1012.6.3|organism=Pylaiella littoralis U1_48|type=mRNA|length=2764bp|location=Sequence derived from alignment at P-littoralis_Contig1012:28963..31726+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig1012:28963..31726+ >mRNA_P-littoralis_Contig1012.6.3 ID=mRNA_P-littoralis_Contig1012.6.3|Name=mRNA_P-littoralis_Contig1012.6.3|organism=Pylaiella littoralis U1_48|type=CDS|length=555bp|location=Sequence derived from alignment at P-littoralis_Contig1012:28963..31726+ (Pylaiella littoralis U1_48)back to top |