Homology
BLAST of mRNA_P-littoralis_Contig1010.14.1 vs. uniprot
Match: A0A6H5L7T2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7T2_9PHAE) HSP 1 Score: 58.5 bits (140), Expect = 2.180e-7 Identity = 50/130 (38.46%), Postives = 63/130 (48.46%), Query Frame = 1 Query: 1 QAGTTEGNDCTSVAVTPDGPALLVGWTDDDFLADATNYFTDFAGVMIETGGESSAGSTTFTPAPGASPSLTPAPFEAPSTPPETPAPESSXXXXXXGXXXXXXXSPSSCGATESFQITSDGLREIEGCFQ 390
QAGTT V V+PDG ALL G++ + T+++ DFAGV+I TG P+TP PA +XXXXXX S SCG ESF+ITSD L +EGC+Q
Sbjct: 362 QAGTTGFETFVGVDVSPDGAALLAGYSTGTWEDSTTDFYADFAGVLIATGA-------------------------VPATP--APATVIAXXXXXXXTGTSGGTSEGSCGDGESFRITSDVLPVVEGCYQ 464
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Stop | 0 |
| Start | 0 |
| Model size | 394 |
| Hectar predicted targeting category | other localisation |
| Exons | 1 |
| Cds size | 393 |
Relationships
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1680789353.6652691-CDS-P-littoralis_Contig1010:67592..67985 | 1680789353.6652691-CDS-P-littoralis_Contig1010:67592..67985 | Pylaiella littoralis U1_48 | CDS | P-littoralis_Contig1010 67593..67985 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig1010.14.1 >prot_P-littoralis_Contig1010.14.1 ID=prot_P-littoralis_Contig1010.14.1|Name=mRNA_P-littoralis_Contig1010.14.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=131bp
QAGTTEGNDCTSVAVTPDGPALLVGWTDDDFLADATNYFTDFAGVMIETG
GESSAGSTTFTPAPGASPSLTPAPFEAPSTPPETPAPESSPPQPSAGTPQ
PVASSPSSCGATESFQITSDGLREIEGCFQA back to topmRNA from alignment at P-littoralis_Contig1010:67592..67985- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_P-littoralis_Contig1010.14.1 ID=mRNA_P-littoralis_Contig1010.14.1|Name=mRNA_P-littoralis_Contig1010.14.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=394bp|location=Sequence derived from alignment at P-littoralis_Contig1010:67592..67985- (Pylaiella littoralis U1_48)
CAGGCGGGAACAACGGAAGGCAACGACTGCACCAGTGTCGCCGTCACCCC
CGACGGGCCGGCGCTGCTCGTGGGTTGGACCGACGATGACTTTCTGGCGG
ACGCGACCAATTATTTTACTGATTTCGCCGGCGTGATGATCGAAACAGGC
GGCGAAAGTTCGGCAGGGTCGACCACGTTCACGCCCGCCCCCGGGGCCTC
ACCCAGCCTTACACCTGCTCCCTTTGAGGCCCCGTCAACACCACCTGAAA
CACCTGCTCCCGAGTCATCACCACCACAGCCCAGCGCTGGTACTCCCCAG
CCGGTTGCCTCTTCTCCGTCTTCTTGCGGGGCAACAGAATCGTTTCAGAT
CACGTCCGATGGCCTCCGCGAAATCGAGGGATGCTTCCAGGCGA back to topCoding sequence (CDS) from alignment at P-littoralis_Contig1010:67592..67985- >mRNA_P-littoralis_Contig1010.14.1 ID=mRNA_P-littoralis_Contig1010.14.1|Name=mRNA_P-littoralis_Contig1010.14.1|organism=Pylaiella littoralis U1_48|type=CDS|length=393bp|location=Sequence derived from alignment at P-littoralis_Contig1010:67592..67985- (Pylaiella littoralis U1_48)
CAGGCGGGAACAACGGAAGGCAACGACTGCACCAGTGTCGCCGTCACCCC
CGACGGGCCGGCGCTGCTCGTGGGTTGGACCGACGATGACTTTCTGGCGG
ACGCGACCAATTATTTTACTGATTTCGCCGGCGTGATGATCGAAACAGGC
GGCGAAAGTTCGGCAGGGTCGACCACGTTCACGCCCGCCCCCGGGGCCTC
ACCCAGCCTTACACCTGCTCCCTTTGAGGCCCCGTCAACACCACCTGAAA
CACCTGCTCCCGAGTCATCACCACCACAGCCCAGCGCTGGTACTCCCCAG
CCGGTTGCCTCTTCTCCGTCTTCTTGCGGGGCAACAGAATCGTTTCAGAT
CACGTCCGATGGCCTCCGCGAAATCGAGGGATGCTTCCAGGCG back to top
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