mRNA_P-littoralis_Contig1010.13.1 (mRNA) Pylaiella littoralis U1_48
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_P-littoralis_Contig1010.13.1 vs. uniprot
Match: A0A6H5L7T2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7T2_9PHAE) HSP 1 Score: 65.1 bits (157), Expect = 1.730e-10 Identity = 31/74 (41.89%), Postives = 48/74 (64.86%), Query Frame = 1 Query: 13 GSNLEVWTVSGDTSYDQVAVIGYS---ADGNEQVDTPYNVTYITNNDDATTVYCYSSENAITVHPSDATWQCKI 225 G E +TVSG + ++ +A++G S AD + V P+ + +++ DD T VYC S+E+A+TVHP DATW C + Sbjct: 473 GDEYEEYTVSGMSGWEHIAILGMSSAFADDDGDVIMPFYLAFVSEEDDGTIVYCVSNEDAVTVHPVDATWTCDL 546
BLAST of mRNA_P-littoralis_Contig1010.13.1 vs. uniprot
Match: A0A6H5JQX7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQX7_9PHAE) HSP 1 Score: 62.4 bits (150), Expect = 4.310e-10 Identity = 32/77 (41.56%), Postives = 49/77 (63.64%), Query Frame = 1 Query: 1 FSNLGSNLEVWTVSGDTSYDQVAVIGY-SADGNEQVD-TPYNVTYITNNDDATTVYCYSSENAITVHPSDATWQCKI 225 FS S E W+++G+ ++ + V D E+ D TP+ + +++ +DDAT VYCYS+E I VHP+DATWQ K+ Sbjct: 115 FSTPESTEEYWSLTGEAEFESILVASILDLDTEEEDDSTPWYLVFLSADDDATVVYCYSNEQGILVHPTDATWQSKM 191
BLAST of mRNA_P-littoralis_Contig1010.13.1 vs. uniprot
Match: D7G0B7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0B7_ECTSI) HSP 1 Score: 60.8 bits (146), Expect = 5.380e-9 Identity = 30/77 (38.96%), Postives = 49/77 (63.64%), Query Frame = 1 Query: 1 FSNLGSNLEVWTVSGDTSYDQVAVIGY-SADGNEQVD-TPYNVTYITNNDDATTVYCYSSENAITVHPSDATWQCKI 225 FS S E W+++G+ ++ + V D E+ D TP+ + +++ +DDAT +YCYS+E I VHP+DATW+C + Sbjct: 577 FSTPESTEEYWSLTGEAEFESILVGSILDEDTEEEGDSTPWYLIFLSEDDDATVLYCYSNEQGILVHPADATWRCDL 653
BLAST of mRNA_P-littoralis_Contig1010.13.1 vs. uniprot
Match: A0A6H5JLC2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLC2_9PHAE) HSP 1 Score: 60.1 bits (144), Expect = 9.990e-9 Identity = 31/74 (41.89%), Postives = 47/74 (63.51%), Query Frame = 1 Query: 1 FSNLGSNLEVWTVSGDTSYDQVAVIGY-SADGNEQVD-TPYNVTYITNNDDATTVYCYSSENAITVHPSDATWQ 216 FS S E W+++G+ ++ + V D E+ D TP+ + +++ +DDAT VYCYS+E I VHP+DATWQ Sbjct: 569 FSTPESTEEYWSLTGEAEFESILVASILDLDTEEEDDSTPWFLVFLSADDDATVVYCYSNEQGILVHPTDATWQ 642 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1010.13.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig1010.13.1 >prot_P-littoralis_Contig1010.13.1 ID=prot_P-littoralis_Contig1010.13.1|Name=mRNA_P-littoralis_Contig1010.13.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=79bp FSNLGSNLEVWTVSGDTSYDQVAVIGYSADGNEQVDTPYNVTYITNNDDAback to top mRNA from alignment at P-littoralis_Contig1010:66887..67580- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig1010.13.1 ID=mRNA_P-littoralis_Contig1010.13.1|Name=mRNA_P-littoralis_Contig1010.13.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=694bp|location=Sequence derived from alignment at P-littoralis_Contig1010:66887..67580- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig1010:66887..67580- >mRNA_P-littoralis_Contig1010.13.1 ID=mRNA_P-littoralis_Contig1010.13.1|Name=mRNA_P-littoralis_Contig1010.13.1|organism=Pylaiella littoralis U1_48|type=CDS|length=237bp|location=Sequence derived from alignment at P-littoralis_Contig1010:66887..67580- (Pylaiella littoralis U1_48)back to top |