mRNA_P-littoralis_Contig1010.10.1 (mRNA) Pylaiella littoralis U1_48
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_P-littoralis_Contig1010.10.1 vs. uniprot
Match: A0A6H5J5V5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J5V5_9PHAE) HSP 1 Score: 219 bits (557), Expect = 3.300e-69 Identity = 106/151 (70.20%), Postives = 123/151 (81.46%), Query Frame = 1 Query: 133 MQPREFRKLYRMLRGRLQYNSVRGKGHNGTVAGEWALAGTLQWLAGHGVSAAADGQNMANSTAYAKIKDGIDAINSCGRLRIKWPRTDDEELRENSREFRARSSQLDPVLKHCVGALDGVPIRRTKPSIKEHPCPDRFFSGHKMTAGMNYQ 585 M P+EF+ LY MLRGRL+ + G+GHNGT+AGEWALA TL+WLAGHGVSAAADG +MA STA+AKIK G+DAIN GRLRIKWPR + EL+ ++ F AR SQLDPVLK CVGAL+G+ +RR KPSI EHP P RFFSGHKMT GMNYQ Sbjct: 1 MSPKEFKGLYEMLRGRLECHGPEGRGHNGTIAGEWALASTLRWLAGHGVSAAADGPHMATSTAFAKIKKGLDAINDYGRLRIKWPRKE-RELQAKAQRFAARRSQLDPVLKRCVGALNGLLVRRKKPSITEHPYPHRFFSGHKMTVGMNYQ 150
BLAST of mRNA_P-littoralis_Contig1010.10.1 vs. uniprot
Match: A0A6H5K3F2_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3F2_9PHAE) HSP 1 Score: 191 bits (486), Expect = 3.840e-55 Identity = 103/241 (42.74%), Postives = 150/241 (62.24%), Query Frame = 1 Query: 43 RGACVERSRQEWKDVIRPLVEDGSFKTRFRMQPREFRKLYRMLRGRLQYNSVRGKGHNGTVAGEWALAGTLQWLAGHGVSAAADGQNMANSTAYAKIKDGIDAINSCGRLRIKWPRTDDEELRENSREFRARSSQLDPVLKHCVGALDGVPIRRTKPSIKEHPCPDRFFSGHKMTAGMNYQVICDARYTVIAACCNTPGSTNDRLAYREANFDTLVESLPGKYYVLGDAAYGATNKMIVPY 765 R V R R+ W +P+V+DG+F+ RFRM EF L MLR +L+ N G NG + E+ LA L++LAG V DG +A STAYA + IDAIN L WP + E+ + +R RS+ + V++ CVGA+DG+ +R T+PS++ H P F+SGHK GMN+Q +C+ARY +IA N PGS NDR A++ + F T++++LP Y++GDAAY A+++++VPY Sbjct: 42 RDKFVRRERRSWYTYAKPMVQDGTFRLRFRMDYTEFALLADMLRPKLERNERMGALRNGVIPVEFQLAMALRFLAGGSVFEVMDGNVIARSTAYAIVHRVIDAINQTRELDCVWP--EGEDALDQCGMYRRRST--NGVIRMCVGAMDGLFVRMTQPSLRRHVNPRSFYSGHKKGFGMNFQGVCNARYEIIAWTMNCPGSCNDRTAFKHSVFGTVLKTLPPGAYIVGDAAYPASDQVLVPY 278
BLAST of mRNA_P-littoralis_Contig1010.10.1 vs. uniprot
Match: A0A6H5K6M2_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6M2_9PHAE) HSP 1 Score: 190 bits (483), Expect = 1.260e-54 Identity = 103/244 (42.21%), Postives = 146/244 (59.84%), Query Frame = 1 Query: 31 ANPRRGACVERSRQEWKDVIRPLVEDGSFKTRFRMQPREFRKLYRMLRGRLQYNSVRGKGHNGTVAGEWALAGTLQWLAGHGVSAAADGQNMANSTAYAKIKDGIDAINSCGRLRIKWPRTDDEELRENSREFRARSSQLDPVLKHCVGALDGVPIRRTKPSIKEHPCPDRFFSGHKMTAGMNYQVICDARYTVIAACCNTPGSTNDRLAYREANFDTLVESLPGKYYVLGDAAYGATNKMIVP 762 A RG V R R+ + +RP+VED +F+ RFRM +F L +LR +LQ + G NG + E+ LA TL++LAG V D +A STAYA + IDAIN +L KWP DD E + +R RS+ + V++ CVGA+DG+ +R P +K H P F+SGHK GMN+Q IC+A Y +I N PGS NDR A++ + FD L+ +P +++GDAAY A+N+++VP Sbjct: 42 APAHRGNFVYRERRSFYTYVRPMVEDNTFRKRFRMDYTDFMTLADILRPKLQRDEKMGALRNGAIPVEFQLAMTLRFLAGGSVFEVMDSNVIAKSTAYAIVHRVIDAINQTRQLNCKWPYGDDAEAQAEL--YRRRST--NGVIRRCVGAMDGLFVRLIPPCLKRHAVPGSFYSGHKKAFGMNFQGICNASYEIITWTMNCPGSQNDRTAFKHSGFDALLSKMPPDCFIVGDAAYPASNRVLVP 281
BLAST of mRNA_P-littoralis_Contig1010.10.1 vs. uniprot
Match: A0A6H5L6B6_9PHAE (DDE Tnp4 domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6B6_9PHAE) HSP 1 Score: 161 bits (408), Expect = 1.260e-43 Identity = 86/199 (43.22%), Postives = 121/199 (60.80%), Query Frame = 1 Query: 169 LRGRLQYNSVRGKGHNGTVAGEWALAGTLQWLAGHGVSAAADGQNMANSTAYAKIKDGIDAINSCGRLRIKWPRTDDEELRENSREFRARSSQLDPVLKHCVGALDGVPIRRTKPSIKEHPCPDRFFSGHKMTAGMNYQVICDARYTVIAACCNTPGSTNDRLAYREANFDTLVESLPGKYYVLGDAAYGATNKMIVPY 765 LR LQ N G NG + E +A TL+WLAG + DG +A STAY I+A+N+C L KWP + E+ + FR RSS V++ CVGA DG+ +R KPS KE P+ +++GHK GMN+Q +CDA+Y ++A N PGS NDR A+ + FD L+ LP ++V+GDAAYGA+ +++VP+ Sbjct: 77 LRPALQKNQQMGLLRNGAIPVEDQVAMTLRWLAGGSIYECMDGHVIARSTAYHVTSTVINALNACPELNCKWP--EGEDAARAAELFRNRSSM--DVVRKCVGATDGLFVRMIKPSAKEVAEPNLYYNGHKKGFGMNFQAVCDAQYRIMAWMMNCPGSQNDRTAFNFSGFDKLLAGLPEGHFVVGDAAYGASERVVVPF 271
BLAST of mRNA_P-littoralis_Contig1010.10.1 vs. uniprot
Match: A0A6H5JJA1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJA1_9PHAE) HSP 1 Score: 160 bits (404), Expect = 3.160e-43 Identity = 93/241 (38.59%), Postives = 139/241 (57.68%), Query Frame = 1 Query: 43 RGACVERSRQEWKDVIRPLVEDGSFKTRFRMQPREFRKLYRMLRGRLQYNSVRGKGHNGTVAGEWALAGTLQWLAGHGVSAAADGQNMANSTAYAKIKDGIDAINSCGRLRIKWPRTDDEELRENSREFRARSSQLDPVLKHCVGALDGVPIRRTKPSIKEHPCPDRFFSGHKMTAGMNYQVICDARYTVIAACCNTPGSTNDRLAYREANFDTLVESLPGKYYVLGDAAYGATNKMIVPY 765 R V R R+ ++ I+P+++D +F RFRM+ +FR L LR LQ N G NG + E+ +A TL+WLAG + DG +A STAY I+A+N+C L KWP + E+L E F A ++ +D V++ CVGA+DG+ +R KPS KE P+ +++GHK GMN+QV S NDR A+ + FD L+ LP ++V+G+AAYGA+ +++VP+ Sbjct: 46 RSTLVARERRPFETYIKPMLQDHTFSMRFRMEYDDFRVLVDHLRPALQQNEKTGLLRNGAIPVEYQVAMTLRWLAGGSIYEYMDGHVIARSTAYHVTSTVINALNACPELNCKWP--EGEDLPEPP-SFSATAALMD-VVRKCVGAMDGLFVRMIKPSAKEVAEPNLYYNGHKKGFGMNFQVC----------------SQNDRTAFNFSGFDKLLAGLPEGHFVVGNAAYGASERVVVPF 266
BLAST of mRNA_P-littoralis_Contig1010.10.1 vs. uniprot
Match: A0A6H5KV00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV00_9PHAE) HSP 1 Score: 141 bits (355), Expect = 3.010e-39 Identity = 66/90 (73.33%), Postives = 77/90 (85.56%), Query Frame = 1 Query: 133 MQPREFRKLYRMLRGRLQYNSVRGKGHNGTVAGEWALAGTLQWLAGHGVSAAADGQNMANSTAYAKIKDGIDAINSCGRLRIKWPRTDDE 402 M P+EF+ LY MLRGRL+ + G+GHNGT+AGEWALA TL+WLAGHGVSAAADG +MA STA+AKIK G+DAIN CGRLRIKWPRT+ E Sbjct: 1 MSPKEFKGLYEMLRGRLECHGPEGRGHNGTIAGEWALASTLRWLAGHGVSAAADGPHMATSTAFAKIKKGLDAINDCGRLRIKWPRTERE 90
BLAST of mRNA_P-littoralis_Contig1010.10.1 vs. uniprot
Match: A0A6H5KNF2_9PHAE (DDE Tnp4 domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNF2_9PHAE) HSP 1 Score: 114 bits (284), Expect = 7.960e-27 Identity = 52/113 (46.02%), Postives = 80/113 (70.80%), Query Frame = 1 Query: 427 FRARSSQLDPVLKHCVGALDGVPIRRTKPSIKEHPCPDRFFSGHKMTAGMNYQVICDARYTVIAACCNTPGSTNDRLAYREANFDTLVESLPGKYYVLGDAAYGATNKMIVPY 765 F A ++ +D V++ CVGA+DG+ +R KPS KE P+ +++GHK GMN+Q +CDA+Y ++A + PGS NDR A+ A FD L+ LP ++V+GDAAYGA+ +++VP+ Sbjct: 8 FSATAALVD-VVRKCVGAMDGLFVRMIKPSAKEVAEPNLYYNGHKNGFGMNFQAVCDAQYRIVAWTMSCPGSQNDRTAFNFAWFDKLLAGLPEGHFVVGDAAYGASERVVVPF 119
BLAST of mRNA_P-littoralis_Contig1010.10.1 vs. uniprot
Match: A0A6H5J641_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J641_9PHAE) HSP 1 Score: 99.4 bits (246), Expect = 7.240e-22 Identity = 46/61 (75.41%), Postives = 50/61 (81.97%), Query Frame = 1 Query: 583 QVICDARYTVIAACCNTPGSTNDRLAYREANFDTLVESLPGKYYVLGDAAYGATNKMIVPY 765 QVICDA Y V AACCNTPGSTN R AY+EA FD LVE LPG Y V+GD AYGAT+KM+VPY Sbjct: 3 QVICDADYIVTAACCNTPGSTNVRQAYKEAEFDQLVEGLPGNYDVVGDTAYGATDKMLVPY 63
BLAST of mRNA_P-littoralis_Contig1010.10.1 vs. uniprot
Match: A0A6A3JEK8_9STRA (DDE Tnp4 domain-containing protein n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3JEK8_9STRA) HSP 1 Score: 90.1 bits (222), Expect = 3.740e-17 Identity = 73/241 (30.29%), Postives = 118/241 (48.96%), Query Frame = 1 Query: 61 RSRQEWKDVIRPLVEDGSFKTRFRMQPREFRKLYR----MLRGRLQYNSVRGKGHNGTVAGEWALAGTLQWLAGHGVSAAADGQNMANSTAYAKIKDGIDAINSCGRLRIKWPRTDDEELRENSREFRARSSQLDPVLKHCVGALDGVPIRRTKPSIKEHPC--PDRFFSGHKMTAGMNYQVICDARYTVIAACCNTPGSTNDRLAYREANFDTLVESLPGKYYVLGDAAYGATNKMIVPY 765 R R +W V+ L+ +G F+ RM P F +L R +LR RL+++ + +G ++ + + +++LAG + ++S AY+ ++AI +L I +P + + + F+ARS + V V ALDG PS + P +FSGH M G+N Q CDA + PG TND AY E++ ++E L YV+ DAAY ATN+++ P+ Sbjct: 33 RPRLDWDRVVERLLLEGEFERVNRMSPSSFNRLCRAVVPVLR-RLEHSWLESQG----ISMKNKIHLAVRYLAGGAIDDIRRVIGSSHSYAYSITVSVMEAIADAPKLGITFPLSSTQ-CSLAAAAFQARSEE--GVFNGYVAALDGWLCHIKAPSELDAGSVGPRLYFSGHYMHYGINVQACCDAFSRFVFIEATHPGGTNDARAYGESDLAAVIERLGRGLYVVADAAYTATNRLLTPF 265
BLAST of mRNA_P-littoralis_Contig1010.10.1 vs. uniprot
Match: A0A6H5KXS3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXS3_9PHAE) HSP 1 Score: 82.0 bits (201), Expect = 6.770e-17 Identity = 40/58 (68.97%), Postives = 47/58 (81.03%), Query Frame = 1 Query: 304 MANSTAYAKIKDGIDAINSCGRLRIKWPRTDDEELRENSREFRARSSQLDPVLKHCVG 477 MA STA+AKIK+G+DAIN CGRLRIKWPRT+ EL+ ++ F ARSSQLDPVLK G Sbjct: 1 MATSTAFAKIKEGLDAINDCGRLRIKWPRTE-RELQAKAQGFAARSSQLDPVLKRYKG 57 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1010.10.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 12 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig1010.10.1 >prot_P-littoralis_Contig1010.10.1 ID=prot_P-littoralis_Contig1010.10.1|Name=mRNA_P-littoralis_Contig1010.10.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=255bp MTTVAAAFLVANPRRGACVERSRQEWKDVIRPLVEDGSFKTRFRMQPREFback to top mRNA from alignment at P-littoralis_Contig1010:54783..56362- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig1010.10.1 ID=mRNA_P-littoralis_Contig1010.10.1|Name=mRNA_P-littoralis_Contig1010.10.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1580bp|location=Sequence derived from alignment at P-littoralis_Contig1010:54783..56362- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig1010:54783..56362- >mRNA_P-littoralis_Contig1010.10.1 ID=mRNA_P-littoralis_Contig1010.10.1|Name=mRNA_P-littoralis_Contig1010.10.1|organism=Pylaiella littoralis U1_48|type=CDS|length=765bp|location=Sequence derived from alignment at P-littoralis_Contig1010:54783..56362- (Pylaiella littoralis U1_48)back to top |